Wall clock time and date at job start Tue Mar 31 2020 21:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99672 * 2 1 4 4 H 1.48497 * 109.47292 * 239.99676 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47016 * 120.00080 * 3 2 1 7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21780 * 119.99733 * 0.02562 * 14 13 11 16 16 C 1.41716 * 120.00510 * 179.97438 * 14 13 11 17 17 S 1.75660 * 125.09936 * 0.02915 * 16 14 13 18 18 C 1.75560 * 91.21010 * 179.97438 * 17 16 14 19 19 C 1.34200 * 110.68150 * 359.97174 * 18 17 16 20 20 C 1.37143 * 125.10336 * 179.72182 * 16 14 13 21 21 O 1.37654 * 124.48362 * 0.27380 * 20 16 14 22 22 C 1.43380 * 114.50327 * 163.25694 * 21 20 16 23 23 C 1.53228 * 109.12724 * 46.54127 * 22 21 20 24 24 O 1.38241 * 124.14805 * 180.20858 * 19 18 17 25 25 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 26 26 C 1.53002 * 117.49888 * 111.25646 * 25 11 10 27 27 C 1.53000 * 117.50107 * 179.91408 * 25 11 10 28 28 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 31 31 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 32 32 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 33 33 H 1.08000 * 124.66094 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.52888 * 166.43148 * 22 21 20 35 35 H 1.08995 * 109.53133 * 286.57451 * 22 21 20 36 36 H 1.08996 * 109.52619 * 57.62835 * 23 22 21 37 37 H 1.09001 * 109.52576 * 177.75411 * 23 22 21 38 38 H 1.09002 * 115.54951 * 325.58620 * 25 11 10 39 39 H 1.09000 * 117.49996 * 215.00804 * 26 25 11 40 40 H 1.08999 * 117.49664 * 0.02562 * 26 25 11 41 41 H 1.09008 * 117.49673 * 359.97438 * 27 25 11 42 42 H 1.08999 * 117.49959 * 144.99502 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4973 -4.8139 0.9309 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0813 15 8 -1.4222 -5.8627 -0.0946 16 6 -1.9687 -5.0971 -2.1760 17 16 -1.6151 -4.2258 -3.6597 18 6 -3.2017 -4.6085 -4.3064 19 6 -3.9066 -5.3411 -3.4303 20 6 -3.2321 -5.6269 -2.2383 21 8 -3.8166 -6.3683 -1.2365 22 6 -5.2404 -6.4975 -1.3456 23 6 -5.6019 -6.8662 -2.7883 24 8 -5.1909 -5.7990 -3.6578 25 6 1.8248 -6.1411 -0.1258 26 6 1.8338 -7.0695 1.0903 27 6 1.0023 -7.4311 -0.1430 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6847 -3.7144 0.8906 31 1 2.6849 -3.7145 -0.8894 32 1 0.4177 -4.1769 -1.9178 33 1 -3.5612 -4.2973 -5.2761 34 1 -5.5879 -7.2803 -0.6716 35 1 -5.7134 -5.5520 -1.0807 36 1 -5.0937 -7.7894 -3.0667 37 1 -6.6799 -7.0052 -2.8696 38 1 2.7239 -6.1092 -0.7413 39 1 2.7387 -7.6484 1.2749 40 1 1.2973 -6.7391 1.9797 41 1 -0.0810 -7.3384 -0.0643 42 1 1.3602 -8.2478 -0.7698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670540073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:17 Heat of formation + Delta-G solvation = -23.728542 kcal Electronic energy + Delta-G solvation = -27363.965643 eV Core-core repulsion = 23438.372598 eV Total energy + Delta-G solvation = -3925.593045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13715 -39.70044 -37.35498 -36.93855 -35.59731 -34.95189 -33.35721 -31.22775 -30.03205 -29.79393 -27.88667 -24.91839 -23.92657 -23.81830 -22.09844 -21.50725 -21.21653 -20.02482 -19.35166 -19.06074 -17.41099 -17.22570 -16.79692 -16.49867 -15.91935 -15.37373 -15.02988 -14.93223 -14.83545 -14.76867 -14.45077 -14.19032 -13.62819 -13.53796 -13.25442 -13.10202 -12.85667 -12.71291 -12.07632 -11.63231 -11.40904 -11.28585 -11.19096 -11.03710 -10.99363 -10.88526 -10.86905 -10.77744 -10.18929 -10.06633 -9.89684 -9.67294 -9.55655 -8.89231 -8.71494 -8.49061 -8.03837 -6.94250 -5.75429 -3.05689 0.38473 1.30748 1.54594 2.10505 3.09926 3.29143 3.43733 3.45532 3.49122 3.49735 3.50109 3.96212 4.20981 4.41182 4.57686 4.61185 4.67097 4.94610 5.04707 5.18235 5.20827 5.23972 5.31106 5.33565 5.38256 5.54173 5.58729 5.80420 5.89536 5.90760 5.95813 6.14499 6.27198 6.41708 6.47808 6.51672 6.59880 6.71246 6.93658 6.98470 7.69568 7.87005 8.41959 8.55611 9.53695 10.09420 10.45122 11.46673 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010645 B = 0.003905 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.784770 B = 7168.685882 C = 8864.546673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.090 0.910 13 N -0.705 5.705 14 C 0.594 3.406 15 O -0.523 6.523 16 C -0.270 4.270 17 S 0.233 5.767 18 C -0.217 4.217 19 C 0.031 3.969 20 C 0.121 3.879 21 O -0.259 6.259 22 C 0.012 3.988 23 C 0.018 3.982 24 O -0.293 6.293 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.185 4.185 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.037 0.963 31 H 0.025 0.975 32 H 0.399 0.601 33 H 0.180 0.820 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -16.317 -8.609 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.108 0.892 13 N -0.356 5.356 14 C 0.381 3.619 15 O -0.403 6.403 16 C -0.391 4.391 17 S 0.497 5.503 18 C -0.355 4.355 19 C -0.026 4.026 20 C 0.060 3.940 21 O -0.172 6.172 22 C -0.064 4.064 23 C -0.058 4.058 24 O -0.209 6.209 25 C -0.183 4.183 26 C -0.208 4.208 27 C -0.222 4.222 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.234 0.766 33 H 0.197 0.803 34 H 0.142 0.858 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.147 -15.829 -8.403 19.294 hybrid contribution -1.132 0.400 0.121 1.207 sum -8.279 -15.429 -8.282 19.370 Atomic orbital electron populations 1.69664 1.05083 1.25781 1.57289 1.24737 0.95476 0.97636 1.02812 0.86279 0.78515 0.83584 0.77834 1.21261 1.21719 1.21287 1.19163 0.90991 0.84034 1.43261 0.91172 1.42353 1.06022 0.99705 1.89600 1.20925 0.93004 0.85086 0.99012 1.20809 0.90041 0.92838 0.89706 0.89222 1.45835 1.14362 1.54568 1.20829 1.15454 0.81133 0.79652 0.85640 1.90782 1.75842 1.41413 1.32225 1.22645 0.99787 1.13183 1.03450 1.84395 1.10075 1.50009 1.05858 1.24998 0.98662 1.07465 1.04335 1.18199 0.87685 1.03333 0.93364 1.18822 0.92332 0.95074 0.87793 1.87184 1.20256 1.66325 1.43458 1.23706 0.80782 1.04295 0.97657 1.23652 1.02620 0.89823 0.89680 1.87112 1.25258 1.51484 1.57021 1.22650 1.01469 0.91472 1.02721 1.22889 1.01986 1.03136 0.92793 1.23274 1.00807 0.97386 1.00715 0.93435 0.77971 0.94557 0.95742 0.76607 0.80257 0.85820 0.90253 0.90428 0.85993 0.87866 0.89255 0.88741 0.86399 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.34 5.43 -59.91 -0.33 -18.66 16 10 C 0.15 2.94 5.80 -4.04 -0.02 2.92 16 11 C 0.17 3.02 2.43 -67.93 -0.17 2.86 16 12 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 13 N -0.71 -12.30 4.48 -56.67 -0.25 -12.55 16 14 C 0.59 10.86 6.93 -14.93 -0.10 10.75 16 15 O -0.52 -10.74 12.88 -11.90 -0.15 -10.89 16 16 C -0.27 -4.39 6.25 -38.65 -0.24 -4.63 16 17 S 0.23 3.01 22.17 -107.50 -2.38 0.63 16 18 C -0.22 -2.56 11.17 29.31 0.33 -2.23 16 19 C 0.03 0.41 6.54 -40.38 -0.26 0.15 16 20 C 0.12 1.87 6.57 -39.35 -0.26 1.61 16 21 O -0.26 -3.94 9.60 -49.14 -0.47 -4.41 16 22 C 0.01 0.12 7.13 37.28 0.27 0.38 16 23 C 0.02 0.15 7.15 37.28 0.27 0.42 16 24 O -0.29 -3.45 10.78 -35.39 -0.38 -3.83 16 25 C -0.16 -2.44 5.36 -90.62 -0.49 -2.92 16 26 C -0.17 -2.35 10.18 -26.69 -0.27 -2.62 16 27 C -0.18 -2.71 9.73 -26.70 -0.26 -2.97 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.39 10.39 7.33 -40.82 -0.30 10.09 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 6.68 7.54 -40.82 -0.31 6.37 16 33 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.36 8.05 -51.93 -0.42 0.95 16 41 H 0.12 2.03 5.02 -51.92 -0.26 1.77 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -33.86 362.73 -9.70 -43.56 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.44 Total: 14.32 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.46 Total: -3.54 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.14 Total: -58.51 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.01 Total: -19.14 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.38 Total: 0.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.86 -9.70 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670540073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.830 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds