Wall clock time and date at job start Tue Mar 31 2020 21:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99672 * 2 1 4 4 H 1.48497 * 109.47292 * 239.99676 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47016 * 120.00080 * 3 2 1 7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21780 * 119.99733 * 0.02562 * 14 13 11 16 16 C 1.41716 * 120.00510 * 179.97438 * 14 13 11 17 17 S 1.75660 * 125.09936 * 0.02915 * 16 14 13 18 18 C 1.75560 * 91.21010 * 179.97438 * 17 16 14 19 19 C 1.34200 * 110.68150 * 359.97174 * 18 17 16 20 20 C 1.37143 * 125.10336 * 179.72182 * 16 14 13 21 21 O 1.37654 * 124.48362 * 0.27380 * 20 16 14 22 22 C 1.43380 * 114.50327 * 163.25694 * 21 20 16 23 23 C 1.53228 * 109.12724 * 46.54127 * 22 21 20 24 24 O 1.38241 * 124.14805 * 180.20858 * 19 18 17 25 25 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 26 26 C 1.53002 * 117.49888 * 111.25646 * 25 11 10 27 27 C 1.53000 * 117.50107 * 179.91408 * 25 11 10 28 28 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 31 31 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 32 32 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 33 33 H 1.08000 * 124.66094 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.52888 * 166.43148 * 22 21 20 35 35 H 1.08995 * 109.53133 * 286.57451 * 22 21 20 36 36 H 1.08996 * 109.52619 * 57.62835 * 23 22 21 37 37 H 1.09001 * 109.52576 * 177.75411 * 23 22 21 38 38 H 1.09002 * 115.54951 * 325.58620 * 25 11 10 39 39 H 1.09000 * 117.49996 * 215.00804 * 26 25 11 40 40 H 1.08999 * 117.49664 * 0.02562 * 26 25 11 41 41 H 1.09008 * 117.49673 * 359.97438 * 27 25 11 42 42 H 1.08999 * 117.49959 * 144.99502 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4973 -4.8139 0.9309 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0813 15 8 -1.4222 -5.8627 -0.0946 16 6 -1.9687 -5.0971 -2.1760 17 16 -1.6151 -4.2258 -3.6597 18 6 -3.2017 -4.6085 -4.3064 19 6 -3.9066 -5.3411 -3.4303 20 6 -3.2321 -5.6269 -2.2383 21 8 -3.8166 -6.3683 -1.2365 22 6 -5.2404 -6.4975 -1.3456 23 6 -5.6019 -6.8662 -2.7883 24 8 -5.1909 -5.7990 -3.6578 25 6 1.8248 -6.1411 -0.1258 26 6 1.8338 -7.0695 1.0903 27 6 1.0023 -7.4311 -0.1430 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6847 -3.7144 0.8906 31 1 2.6849 -3.7145 -0.8894 32 1 0.4177 -4.1769 -1.9178 33 1 -3.5612 -4.2973 -5.2761 34 1 -5.5879 -7.2803 -0.6716 35 1 -5.7134 -5.5520 -1.0807 36 1 -5.0937 -7.7894 -3.0667 37 1 -6.6799 -7.0052 -2.8696 38 1 2.7239 -6.1092 -0.7413 39 1 2.7387 -7.6484 1.2749 40 1 1.2973 -6.7391 1.9797 41 1 -0.0810 -7.3384 -0.0643 42 1 1.3602 -8.2478 -0.7698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670540073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:16 Heat of formation + Delta-G solvation = -47.090250 kcal Electronic energy + Delta-G solvation = -27364.978683 eV Core-core repulsion = 23438.372598 eV Total energy + Delta-G solvation = -3926.606085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12542 -41.03163 -38.56833 -37.99790 -36.62209 -36.60528 -35.01064 -33.08141 -31.13246 -30.77711 -29.44553 -26.29423 -25.54946 -24.71993 -23.32805 -23.06374 -22.41449 -21.37158 -20.33438 -20.21856 -19.17439 -18.35841 -18.04773 -17.57019 -17.09452 -16.71515 -16.54075 -16.16013 -15.96605 -15.82084 -15.64753 -15.40789 -15.15279 -14.93561 -14.77054 -14.42303 -14.17281 -13.69932 -13.64126 -13.17973 -12.75279 -12.71901 -12.52544 -12.36665 -12.31853 -12.11045 -12.08302 -11.99790 -11.83373 -11.78491 -11.30111 -11.12408 -10.97131 -10.86489 -10.04047 -9.64102 -9.05503 -9.00740 -7.91612 -5.22336 -0.71816 0.27393 0.52846 1.05925 1.49837 1.52721 1.58761 2.07475 2.11224 2.25348 2.46407 2.57864 2.98902 3.13299 3.42283 3.54780 3.57599 3.91332 3.92750 3.98120 4.06303 4.14255 4.16825 4.22761 4.37130 4.40370 4.45232 4.51924 4.59309 4.63051 4.82119 4.86433 4.88971 5.04362 5.11051 5.29421 5.36856 5.51222 5.55026 5.60392 5.98033 6.27832 6.49208 7.18280 7.35190 8.07153 8.32068 9.31226 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010645 B = 0.003905 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.784770 B = 7168.685882 C = 8864.546673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.059 0.941 13 N -0.703 5.703 14 C 0.591 3.409 15 O -0.557 6.557 16 C -0.318 4.318 17 S 0.251 5.749 18 C -0.195 4.195 19 C 0.016 3.984 20 C 0.121 3.879 21 O -0.291 6.291 22 C 0.001 3.999 23 C 0.018 3.982 24 O -0.299 6.299 25 C -0.165 4.165 26 C -0.160 4.160 27 C -0.184 4.184 28 H 0.250 0.750 29 H 0.373 0.627 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.402 0.598 33 H 0.214 0.786 34 H 0.153 0.847 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 -17.015 -10.131 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.075 3.925 12 H 0.077 0.923 13 N -0.354 5.354 14 C 0.381 3.619 15 O -0.439 6.439 16 C -0.437 4.437 17 S 0.515 5.485 18 C -0.333 4.333 19 C -0.040 4.040 20 C 0.058 3.942 21 O -0.204 6.204 22 C -0.074 4.074 23 C -0.057 4.057 24 O -0.215 6.215 25 C -0.185 4.185 26 C -0.197 4.197 27 C -0.221 4.221 28 H 0.059 0.941 29 H 0.205 0.795 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.237 0.763 33 H 0.231 0.769 34 H 0.170 0.830 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.180 0.820 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.623 -16.558 -9.932 20.413 hybrid contribution -1.372 0.525 0.607 1.589 sum -7.995 -16.033 -9.326 20.198 Atomic orbital electron populations 1.69839 1.06707 1.26068 1.59247 1.25549 0.96258 1.01040 1.03493 0.85216 0.77141 0.79144 0.78233 1.19967 1.22470 1.20673 1.19601 0.91614 0.85002 1.41560 0.90181 1.42530 1.05610 1.00965 1.89599 1.21050 0.93245 0.83730 0.99626 1.20604 0.89463 0.93755 0.88717 0.92288 1.45785 1.14354 1.54567 1.20674 1.15735 0.81308 0.79002 0.85880 1.90748 1.76465 1.42982 1.33706 1.22624 1.00374 1.16040 1.04701 1.84217 1.10924 1.49264 1.04096 1.25427 0.97535 1.05297 1.04992 1.18236 0.88596 1.04273 0.92907 1.19159 0.92284 0.94223 0.88510 1.87133 1.23113 1.66135 1.44055 1.24091 0.78222 1.05292 0.99771 1.23945 1.04939 0.88974 0.87841 1.87099 1.24155 1.52494 1.57796 1.22575 1.01802 0.89909 1.04192 1.22976 1.02611 1.02370 0.91779 1.23185 0.99317 0.97785 1.01842 0.94103 0.79506 0.94162 0.93996 0.76290 0.76947 0.82961 0.90580 0.89774 0.82034 0.85773 0.86312 0.90081 0.89228 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -37.78 5.43 -343.46 -1.87 -39.64 16 10 C 0.15 5.96 5.80 86.38 0.50 6.46 16 11 C 0.18 6.50 2.43 44.99 0.11 6.61 16 12 H 0.06 2.50 7.33 -2.39 -0.02 2.48 16 13 N -0.70 -25.39 4.48 -451.40 -2.02 -27.41 16 14 C 0.59 22.75 6.93 85.10 0.59 23.34 16 15 O -0.56 -24.35 12.88 11.67 0.15 -24.20 16 16 C -0.32 -10.68 6.25 22.87 0.14 -10.54 16 17 S 0.25 6.43 22.17 -56.49 -1.25 5.18 16 18 C -0.20 -4.29 11.17 66.90 0.75 -3.54 16 19 C 0.02 0.41 6.54 21.75 0.14 0.56 16 20 C 0.12 3.81 6.57 22.42 0.15 3.96 16 21 O -0.29 -9.11 9.60 -90.53 -0.87 -9.98 16 22 C 0.00 0.03 7.13 72.06 0.51 0.54 16 23 C 0.02 0.27 7.15 72.06 0.52 0.78 16 24 O -0.30 -6.53 10.78 -112.98 -1.22 -7.75 16 25 C -0.17 -4.80 5.36 -10.79 -0.06 -4.85 16 26 C -0.16 -4.24 10.18 30.62 0.31 -3.92 16 27 C -0.18 -5.32 9.73 30.62 0.30 -5.02 16 28 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.37 20.75 7.33 -92.71 -0.68 20.07 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.40 13.80 7.54 -92.70 -0.70 13.10 16 33 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 3.11 8.11 -2.39 -0.02 3.09 16 39 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.08 2.37 8.05 -2.39 -0.02 2.35 16 41 H 0.09 3.20 5.02 -2.38 -0.01 3.19 16 42 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -75.22 362.73 0.20 -75.02 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -0.30 Total: 42.15 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 5.27 Total: -1.93 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -3.61 Total: -126.29 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.94 Total: -41.92 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -1.25 Total: 5.18 kcal Total: -75.22 0.20 -75.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670540073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.934 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds