Wall clock time and date at job start Tue Mar 31 2020 20:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39900 * 109.47114 * 2 1 4 4 F 1.39898 * 109.47584 * 239.99522 * 2 1 3 5 5 C 1.50702 * 109.47028 * 119.99562 * 2 1 3 6 6 O 1.21283 * 120.00262 * 335.00385 * 5 2 1 7 7 N 1.34777 * 119.99928 * 154.72291 * 5 2 1 8 8 C 1.47423 * 125.65041 * 179.97438 * 7 5 2 9 9 C 1.55132 * 104.72496 * 155.81864 * 8 7 5 10 10 H 1.08999 * 110.90436 * 155.27285 * 9 8 7 11 11 N 1.46497 * 111.22462 * 279.17802 * 9 8 7 12 12 C 1.34772 * 120.00386 * 267.20471 * 11 9 8 13 13 O 1.21281 * 119.99410 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00434 * 180.02562 * 12 11 9 15 15 S 1.80993 * 109.47392 * 180.02562 * 14 12 11 16 16 C 1.76204 * 100.00146 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99910 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00072 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00349 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47172 * 59.99983 * 20 18 16 22 22 H 1.48497 * 109.47610 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47443 * 300.00311 * 20 18 16 24 24 C 1.55156 * 101.48009 * 37.29813 * 9 8 7 25 25 H 1.09001 * 110.72046 * 82.70277 * 24 9 8 26 26 O 1.42905 * 110.71857 * 205.96708 * 24 9 8 27 27 C 1.47023 * 125.65037 * 0.30479 * 7 5 2 28 28 H 1.08995 * 109.47266 * 300.00386 * 1 2 3 29 29 H 1.08994 * 109.46913 * 60.00354 * 1 2 3 30 30 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09004 * 110.36778 * 274.75408 * 8 7 5 32 32 H 1.09006 * 110.36423 * 37.07061 * 8 7 5 33 33 H 0.97003 * 119.99510 * 87.20972 * 11 9 8 34 34 H 1.09000 * 109.46700 * 300.00086 * 14 12 11 35 35 H 1.09004 * 109.47295 * 59.99327 * 14 12 11 36 36 H 0.96997 * 120.00362 * 179.97438 * 19 18 16 37 37 H 0.96693 * 114.00153 * 174.97623 * 26 24 9 38 38 H 1.08997 * 109.88157 * 300.44099 * 27 7 5 39 39 H 1.09005 * 109.88313 * 61.44869 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3369 -0.7704 2.2224 7 7 3.2520 -1.2837 1.2269 8 6 3.8650 -2.0066 2.3561 9 6 4.8976 -2.9603 1.6999 10 1 5.6911 -3.2168 2.4018 11 7 4.2496 -4.1670 1.1801 12 6 4.1650 -5.2707 1.9488 13 8 4.6257 -5.2651 3.0707 14 6 3.4989 -6.5122 1.4140 15 16 3.5433 -7.8111 2.6737 16 6 2.7216 -9.1064 1.8067 17 1 2.3692 -8.9429 0.7989 18 6 2.5272 -10.3368 2.4187 19 7 2.9571 -10.5363 3.6468 20 14 1.6554 -11.7098 1.4999 21 1 2.4134 -12.0388 0.2659 22 1 1.5746 -12.9125 2.3672 23 1 0.2846 -11.2696 1.1361 24 6 5.4410 -2.0790 0.5442 25 1 6.2177 -1.4051 0.9056 26 8 5.9319 -2.8919 -0.5237 27 6 4.1944 -1.2861 0.0985 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.3637 -1.3079 3.0280 32 1 3.1097 -2.5788 2.8951 33 1 3.8816 -4.1715 0.2827 34 1 2.4629 -6.2880 1.1602 35 1 4.0260 -6.8520 0.5224 36 1 2.8209 -11.3961 4.0747 37 1 6.2120 -2.3915 -1.3022 38 1 3.7373 -1.7689 -0.7652 39 1 4.4735 -0.2629 -0.1536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683357158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:42 Heat of formation + Delta-G solvation = -203.473919 kcal Electronic energy + Delta-G solvation = -27512.193978 eV Core-core repulsion = 23024.577059 eV Total energy + Delta-G solvation = -4487.616919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.71968 -47.70402 -40.82458 -39.33097 -38.20909 -36.06285 -33.98519 -32.41953 -32.06592 -30.85540 -29.18900 -28.43314 -25.74331 -25.42255 -23.29816 -21.65333 -20.79115 -20.23420 -18.60738 -18.28737 -17.90172 -17.76026 -17.41356 -16.56413 -16.28470 -16.11907 -15.80507 -15.05959 -14.93379 -14.79367 -14.50975 -14.23126 -14.06497 -14.02470 -13.78253 -13.63923 -13.36188 -13.18578 -13.04460 -12.86794 -12.76498 -12.56139 -12.43258 -12.21429 -11.86109 -11.44205 -11.03697 -11.02902 -10.82798 -10.75781 -10.35625 -9.81947 -9.51792 -9.38339 -9.05277 -8.90040 -8.23774 -6.49018 -6.20589 -3.91199 1.67362 1.97313 2.94324 2.99670 3.07848 3.24482 3.27484 3.30517 3.37366 3.55604 3.66142 3.78199 3.94846 4.05262 4.18913 4.21545 4.52014 4.77476 4.92162 4.94866 5.06244 5.10561 5.11837 5.14559 5.23696 5.36806 5.42741 5.47503 5.57940 5.77522 5.89483 6.15043 6.50672 6.69399 7.11775 7.25438 7.60220 7.65538 8.36043 8.55325 9.24615 10.86820 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002703 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.954354 B =10354.634432 C =11041.709927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.286 3.714 3 F -0.182 7.182 4 F -0.187 7.187 5 C 0.500 3.500 6 O -0.495 6.495 7 N -0.598 5.598 8 C 0.090 3.910 9 C 0.146 3.854 10 H 0.122 0.878 11 N -0.716 5.716 12 C 0.536 3.464 13 O -0.517 6.517 14 C -0.152 4.152 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.088 3.912 25 H 0.091 0.909 26 O -0.541 6.541 27 C 0.053 3.947 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.403 0.597 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.269 0.731 37 H 0.383 0.617 38 H 0.096 0.904 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 25.145 -12.024 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.246 3.754 3 F -0.163 7.163 4 F -0.168 7.168 5 C 0.283 3.717 6 O -0.368 6.368 7 N -0.332 5.332 8 C -0.033 4.033 9 C 0.038 3.962 10 H 0.140 0.860 11 N -0.370 5.370 12 C 0.323 3.677 13 O -0.391 6.391 14 C -0.303 4.303 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.027 3.973 25 H 0.109 0.891 26 O -0.346 6.346 27 C -0.070 4.070 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.114 0.886 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.834 24.540 -9.053 26.221 hybrid contribution -0.995 -0.214 -2.955 3.125 sum 0.838 24.326 -12.008 27.141 Atomic orbital electron populations 1.22657 0.88433 1.06707 1.06287 1.21332 0.95967 0.76008 0.82057 1.93085 1.90554 1.36147 1.96561 1.93035 1.90315 1.80571 1.52855 1.20399 0.81203 0.80742 0.89362 1.90831 1.54799 1.57974 1.33223 1.48303 1.15086 1.53808 1.16038 1.23062 0.96977 0.94416 0.88862 1.22062 0.94660 0.84770 0.94707 0.85984 1.45638 1.61249 1.11311 1.18816 1.20352 0.78539 0.83581 0.85248 1.90703 1.46268 1.83208 1.18928 1.23514 1.02711 0.97848 1.06209 1.85371 1.76951 1.03713 1.17123 1.22830 1.43628 0.98943 1.03055 0.90976 1.24984 0.95505 0.97992 0.95058 1.70004 1.43748 1.24461 1.12108 0.86224 0.79780 0.80158 0.79335 1.19923 1.20814 1.19947 1.23138 0.93578 0.92022 0.88525 0.89084 1.86653 1.84676 1.35939 1.27333 1.23238 0.90979 1.02089 0.90685 0.87936 0.88935 0.88518 0.89261 0.88347 0.76288 0.89307 0.89050 0.92123 0.76882 0.88593 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 8.92 37.16 0.33 -0.95 16 2 C 0.29 2.51 2.22 -27.88 -0.06 2.45 16 3 F -0.18 -1.67 17.05 2.25 0.04 -1.63 16 4 F -0.19 -1.56 14.16 2.25 0.03 -1.52 16 5 C 0.50 5.58 7.29 -10.98 -0.08 5.50 16 6 O -0.49 -7.06 16.35 5.55 0.09 -6.97 16 7 N -0.60 -5.81 3.32 -170.38 -0.57 -6.38 16 8 C 0.09 0.95 6.62 -2.41 -0.02 0.93 16 9 C 0.15 1.54 3.31 -65.66 -0.22 1.33 16 10 H 0.12 1.42 7.54 -51.93 -0.39 1.03 16 11 N -0.72 -9.48 4.81 -51.62 -0.25 -9.73 16 12 C 0.54 9.88 7.85 -10.99 -0.09 9.79 16 13 O -0.52 -11.37 15.50 5.56 0.09 -11.28 16 14 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 17 H 0.07 1.95 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 20 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 24 C 0.09 0.59 4.12 -24.90 -0.10 0.49 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 O -0.54 -3.82 12.67 -35.23 -0.45 -4.26 16 27 C 0.05 0.36 5.53 -3.07 -0.02 0.34 16 28 H 0.10 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 33 H 0.40 4.64 8.39 -40.82 -0.34 4.30 16 34 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.38 0.90 9.11 45.56 0.42 1.32 16 38 H 0.10 0.65 6.55 -51.93 -0.34 0.31 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -36.96 356.14 -5.97 -42.92 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.99 Total: 2.39 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.17 Total: 3.96 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.08 Total: -41.66 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.27 Total: -22.52 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.96 -5.97 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683357158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.550 kcal (2) G-P(sol) polarization free energy of solvation -36.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds