Wall clock time and date at job start Tue Mar 31 2020 20:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39900 * 109.47114 * 2 1 4 4 F 1.39898 * 109.47584 * 239.99522 * 2 1 3 5 5 C 1.50702 * 109.47028 * 119.99562 * 2 1 3 6 6 O 1.21283 * 120.00262 * 335.00385 * 5 2 1 7 7 N 1.34777 * 119.99928 * 154.72291 * 5 2 1 8 8 C 1.47423 * 125.65041 * 179.97438 * 7 5 2 9 9 C 1.55132 * 104.72496 * 155.81864 * 8 7 5 10 10 H 1.08999 * 110.90436 * 155.27285 * 9 8 7 11 11 N 1.46497 * 111.22462 * 279.17802 * 9 8 7 12 12 C 1.34772 * 120.00386 * 267.20471 * 11 9 8 13 13 O 1.21281 * 119.99410 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00434 * 180.02562 * 12 11 9 15 15 S 1.80993 * 109.47392 * 180.02562 * 14 12 11 16 16 C 1.76204 * 100.00146 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99910 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00072 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00349 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47172 * 59.99983 * 20 18 16 22 22 H 1.48497 * 109.47610 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47443 * 300.00311 * 20 18 16 24 24 C 1.55156 * 101.48009 * 37.29813 * 9 8 7 25 25 H 1.09001 * 110.72046 * 82.70277 * 24 9 8 26 26 O 1.42905 * 110.71857 * 205.96708 * 24 9 8 27 27 C 1.47023 * 125.65037 * 0.30479 * 7 5 2 28 28 H 1.08995 * 109.47266 * 300.00386 * 1 2 3 29 29 H 1.08994 * 109.46913 * 60.00354 * 1 2 3 30 30 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09004 * 110.36778 * 274.75408 * 8 7 5 32 32 H 1.09006 * 110.36423 * 37.07061 * 8 7 5 33 33 H 0.97003 * 119.99510 * 87.20972 * 11 9 8 34 34 H 1.09000 * 109.46700 * 300.00086 * 14 12 11 35 35 H 1.09004 * 109.47295 * 59.99327 * 14 12 11 36 36 H 0.96997 * 120.00362 * 179.97438 * 19 18 16 37 37 H 0.96693 * 114.00153 * 174.97623 * 26 24 9 38 38 H 1.08997 * 109.88157 * 300.44099 * 27 7 5 39 39 H 1.09005 * 109.88313 * 61.44869 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3369 -0.7704 2.2224 7 7 3.2520 -1.2837 1.2269 8 6 3.8650 -2.0066 2.3561 9 6 4.8976 -2.9603 1.6999 10 1 5.6911 -3.2168 2.4018 11 7 4.2496 -4.1670 1.1801 12 6 4.1650 -5.2707 1.9488 13 8 4.6257 -5.2651 3.0707 14 6 3.4989 -6.5122 1.4140 15 16 3.5433 -7.8111 2.6737 16 6 2.7216 -9.1064 1.8067 17 1 2.3692 -8.9429 0.7989 18 6 2.5272 -10.3368 2.4187 19 7 2.9571 -10.5363 3.6468 20 14 1.6554 -11.7098 1.4999 21 1 2.4134 -12.0388 0.2659 22 1 1.5746 -12.9125 2.3672 23 1 0.2846 -11.2696 1.1361 24 6 5.4410 -2.0790 0.5442 25 1 6.2177 -1.4051 0.9056 26 8 5.9319 -2.8919 -0.5237 27 6 4.1944 -1.2861 0.0985 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.3637 -1.3079 3.0280 32 1 3.1097 -2.5788 2.8951 33 1 3.8816 -4.1715 0.2827 34 1 2.4629 -6.2880 1.1602 35 1 4.0260 -6.8520 0.5224 36 1 2.8209 -11.3961 4.0747 37 1 6.2120 -2.3915 -1.3022 38 1 3.7373 -1.7689 -0.7652 39 1 4.4735 -0.2629 -0.1536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683357158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:41 Heat of formation + Delta-G solvation = -233.818042 kcal Electronic energy + Delta-G solvation = -27513.509798 eV Core-core repulsion = 23024.577059 eV Total energy + Delta-G solvation = -4488.932739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.40508 -48.38360 -41.70670 -40.49829 -39.22672 -36.71070 -35.18222 -34.59180 -32.75730 -31.96175 -30.18800 -29.47235 -27.67786 -26.44064 -24.01178 -22.61894 -21.73195 -21.25195 -19.93430 -19.27197 -18.97363 -18.52578 -18.21970 -17.79109 -17.23638 -16.96632 -16.88523 -16.81789 -16.38771 -15.95948 -15.56797 -15.27141 -15.00673 -14.87749 -14.70261 -14.54923 -14.48591 -14.34995 -13.99116 -13.74397 -13.61806 -13.41735 -13.38970 -13.18151 -13.15953 -12.93815 -12.87036 -12.65682 -12.12969 -11.73803 -11.51870 -11.13664 -11.09659 -10.95702 -10.42830 -10.30250 -9.90529 -8.67646 -8.35297 -6.13639 0.83499 1.20597 1.24909 1.43504 1.45212 1.54722 1.55346 2.17667 2.27100 2.35422 2.71917 2.96320 2.98705 3.13148 3.27792 3.33829 3.39157 3.42146 3.91003 4.01692 4.17395 4.21641 4.26900 4.43709 4.46535 4.47496 4.50798 4.55868 4.57682 4.69399 4.87008 4.92410 5.37506 5.40593 5.91880 6.18708 6.40541 6.44358 6.85872 7.05740 7.17854 8.73741 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002703 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.954354 B =10354.634432 C =11041.709927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.294 3.706 3 F -0.182 7.182 4 F -0.181 7.181 5 C 0.491 3.509 6 O -0.537 6.537 7 N -0.596 5.596 8 C 0.093 3.907 9 C 0.134 3.866 10 H 0.112 0.888 11 N -0.693 5.693 12 C 0.538 3.462 13 O -0.560 6.560 14 C -0.130 4.130 15 S -0.146 6.146 16 C -0.549 4.549 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.263 1.263 24 C 0.108 3.892 25 H 0.124 0.876 26 O -0.559 6.559 27 C 0.053 3.947 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.414 0.586 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.272 0.728 37 H 0.406 0.594 38 H 0.100 0.900 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 26.415 -15.094 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.255 3.745 3 F -0.163 7.163 4 F -0.162 7.162 5 C 0.275 3.725 6 O -0.413 6.413 7 N -0.330 5.330 8 C -0.031 4.031 9 C 0.028 3.972 10 H 0.130 0.870 11 N -0.346 5.346 12 C 0.324 3.676 13 O -0.438 6.438 14 C -0.281 4.281 15 S 0.081 5.919 16 C -0.697 4.697 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.187 1.187 24 C 0.047 3.953 25 H 0.141 0.859 26 O -0.368 6.368 27 C -0.069 4.069 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.258 0.742 38 H 0.118 0.882 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.911 25.867 -12.209 28.667 hybrid contribution -0.944 -0.483 -2.055 2.312 sum 0.968 25.383 -14.263 29.132 Atomic orbital electron populations 1.22711 0.87112 1.06975 1.07280 1.21204 0.96703 0.75588 0.81034 1.93088 1.90659 1.36092 1.96510 1.93045 1.90366 1.80492 1.52320 1.20913 0.81180 0.80660 0.89737 1.90810 1.56001 1.59671 1.34863 1.48427 1.15169 1.52760 1.16613 1.22932 0.96073 0.94642 0.89410 1.22294 0.94307 0.83882 0.96758 0.87030 1.45370 1.59996 1.10720 1.18527 1.20023 0.78302 0.84299 0.84983 1.90690 1.48361 1.83981 1.20749 1.23349 1.04260 0.96391 1.04075 1.85521 1.77431 1.07136 1.21788 1.23180 1.43697 0.99410 1.03435 0.90008 1.26127 0.96107 1.00911 0.95931 1.70171 1.45199 1.25302 1.14066 0.85004 0.78715 0.76231 0.78047 1.18546 1.20313 1.18742 1.23039 0.94270 0.90761 0.87182 0.85883 1.86598 1.84740 1.37057 1.28381 1.23461 0.90208 1.03746 0.89533 0.88363 0.86539 0.88646 0.87260 0.91998 0.74938 0.87830 0.87274 0.91942 0.74180 0.88150 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.92 71.98 0.64 -1.64 16 2 C 0.29 4.62 2.22 29.85 0.07 4.69 16 3 F -0.18 -2.93 17.05 44.97 0.77 -2.16 16 4 F -0.18 -2.52 14.16 44.97 0.64 -1.88 16 5 C 0.49 10.53 7.29 87.66 0.64 11.17 16 6 O -0.54 -15.59 16.35 -3.04 -0.05 -15.64 16 7 N -0.60 -10.64 3.32 -811.34 -2.70 -13.34 16 8 C 0.09 1.91 6.62 86.93 0.58 2.49 16 9 C 0.13 2.68 3.31 46.46 0.15 2.83 16 10 H 0.11 2.55 7.54 -2.39 -0.02 2.53 16 11 N -0.69 -17.64 4.81 -435.62 -2.10 -19.74 16 12 C 0.54 19.95 7.85 87.66 0.69 20.64 16 13 O -0.56 -25.49 15.50 -3.03 -0.05 -25.54 16 14 C -0.13 -5.27 6.16 71.23 0.44 -4.83 16 15 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 16 C -0.55 -31.79 9.50 67.95 0.65 -31.15 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.81 5.49 84.86 0.47 1.27 16 19 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 20 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 24 C 0.11 1.10 4.12 31.78 0.13 1.23 16 25 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 26 O -0.56 -5.87 12.67 -148.98 -1.89 -7.76 16 27 C 0.05 0.53 5.53 86.73 0.48 1.01 16 28 H 0.10 1.33 7.87 -2.39 -0.02 1.31 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.76 8.03 -2.38 -0.02 1.74 16 33 H 0.41 8.70 8.39 -92.71 -0.78 7.92 16 34 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 35 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.41 0.20 9.11 -74.06 -0.67 -0.47 16 38 H 0.10 0.99 6.55 -2.39 -0.02 0.97 16 39 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -83.77 356.14 0.37 -83.40 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.33 Total: 14.51 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 4.93 Total: 7.72 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -4.51 Total: -89.24 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -1.98 Total: -48.93 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 1.40 Total: -4.05 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -83.77 0.37 -83.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683357158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.419 kcal (2) G-P(sol) polarization free energy of solvation -83.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds