Wall clock time and date at job start Tue Mar 31 2020 21:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48499 * 109.46934 * 239.99873 * 3 2 1 5 5 H 1.48500 * 109.47338 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46975 * 120.00003 * 3 2 1 7 7 C 1.38807 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00002 * 173.78172 * 9 7 2 11 11 C 1.52999 * 112.85309 * 294.86236 * 10 9 7 12 12 N 1.46497 * 109.46844 * 292.10144 * 11 10 9 13 13 C 1.34786 * 119.99716 * 180.21557 * 12 11 10 14 14 O 1.21775 * 119.99548 * 359.72635 * 13 12 11 15 15 C 1.41707 * 119.99729 * 179.72312 * 13 12 11 16 16 S 1.75661 * 125.10645 * 0.02854 * 15 13 12 17 17 C 1.75553 * 91.21205 * 179.97438 * 16 15 13 18 18 C 1.34198 * 110.68272 * 359.97050 * 17 16 15 19 19 C 1.37151 * 125.10100 * 179.71862 * 15 13 12 20 20 O 1.37662 * 124.48033 * 0.29992 * 19 15 13 21 21 C 1.43374 * 114.50034 * 163.25074 * 20 19 15 22 22 C 1.53228 * 109.13091 * 46.53484 * 21 20 19 23 23 O 1.38245 * 124.14738 * 180.21085 * 18 17 16 24 24 C 1.53785 * 113.68978 * 66.13391 * 10 9 7 25 25 C 1.53772 * 87.08385 * 89.12319 * 24 10 9 26 26 C 1.53778 * 87.08240 * 25.43124 * 25 24 10 27 27 H 0.97000 * 119.99788 * 0.02562 * 1 2 3 28 28 H 0.96994 * 119.99682 * 353.78191 * 9 7 2 29 29 H 1.08998 * 109.46917 * 172.09651 * 11 10 9 30 30 H 1.08999 * 109.46503 * 52.10158 * 11 10 9 31 31 H 0.96991 * 120.00416 * 359.94264 * 12 11 10 32 32 H 1.08005 * 124.65660 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.52932 * 166.42794 * 21 20 19 34 34 H 1.08998 * 109.53351 * 286.63814 * 21 20 19 35 35 H 1.09000 * 109.52003 * 57.62712 * 22 21 20 36 36 H 1.09000 * 109.52038 * 177.75776 * 22 21 20 37 37 H 1.08997 * 113.61417 * 203.67763 * 24 10 9 38 38 H 1.09004 * 113.61390 * 334.57630 * 24 10 9 39 39 H 1.09002 * 113.61684 * 270.88817 * 25 24 10 40 40 H 1.09002 * 113.61705 * 139.98093 * 25 24 10 41 41 H 1.08999 * 113.61892 * 220.01821 * 26 25 24 42 42 H 1.09007 * 113.61081 * 89.11594 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0515 -3.6530 -0.1396 11 6 2.7384 -3.7986 -1.4990 12 7 1.7235 -3.9318 -2.5470 13 6 2.0984 -4.0778 -3.8334 14 8 3.2806 -4.0939 -4.1249 15 6 1.1168 -4.2125 -4.8465 16 16 -0.6192 -4.2070 -4.5783 17 6 -0.9227 -4.4140 -6.2949 18 6 0.2318 -4.4762 -6.9762 19 6 1.3795 -4.3607 -6.1845 20 8 2.6424 -4.4052 -6.7305 21 6 2.6962 -4.9340 -8.0620 22 6 1.5938 -4.2847 -8.9052 23 8 0.3163 -4.6322 -8.3473 24 6 2.9701 -3.9713 1.0520 25 6 1.7623 -4.6734 1.6945 26 6 1.2262 -4.8846 0.2688 27 1 -0.4850 0.8401 -0.0004 28 1 0.3598 -2.3905 0.0890 29 1 3.3726 -4.6851 -1.4924 30 1 3.3486 -2.9167 -1.6939 31 1 0.7819 -3.9189 -2.3148 32 1 -1.9038 -4.4817 -6.7414 33 1 3.6688 -4.7142 -8.5024 34 1 2.5442 -6.0130 -8.0321 35 1 1.7205 -3.2021 -8.8990 36 1 1.6541 -4.6527 -9.9294 37 1 3.7877 -4.6482 0.8044 38 1 3.3015 -3.0870 1.5963 39 1 1.1434 -4.0111 2.2999 40 1 2.0179 -5.6010 2.2068 41 1 0.1498 -4.7377 0.1807 42 1 1.5671 -5.8114 -0.1930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700141618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:32 Heat of formation + Delta-G solvation = -30.257465 kcal Electronic energy + Delta-G solvation = -27278.824251 eV Core-core repulsion = 23352.948090 eV Total energy + Delta-G solvation = -3925.876160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14723 -39.50667 -38.41587 -37.09266 -35.69086 -33.84270 -33.24018 -30.33986 -30.00933 -29.76278 -27.25342 -25.28071 -24.69213 -23.91672 -23.63746 -21.78798 -20.73784 -19.40848 -19.09723 -18.14610 -17.39437 -17.09692 -16.95185 -16.46029 -15.48709 -15.31464 -15.26169 -14.95533 -14.67771 -14.45292 -14.39773 -14.20421 -13.86549 -13.34088 -13.29666 -13.15758 -12.87879 -12.60843 -12.03682 -11.75224 -11.42528 -11.24594 -11.21571 -11.10997 -10.99059 -10.91776 -10.81149 -10.35521 -10.23594 -10.08528 -9.71615 -9.61859 -9.44598 -8.86122 -8.74495 -8.38335 -8.07306 -7.02338 -5.80462 -3.10080 0.37290 1.27898 1.51731 2.09151 3.07875 3.29024 3.44237 3.48705 3.50317 3.53591 3.64698 3.98832 4.37540 4.56135 4.59820 4.64648 5.03055 5.16782 5.18895 5.20665 5.26757 5.29846 5.30992 5.41253 5.48500 5.55965 5.80005 5.83988 6.08777 6.15534 6.21248 6.34126 6.41324 6.45721 6.57341 6.73093 6.91089 6.92961 6.99302 7.08352 7.71885 7.96176 8.38401 8.62717 9.49690 10.02861 10.38386 11.41533 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003523 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.508367 B = 7946.912527 C = 8652.965949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.122 3.878 12 N -0.702 5.702 13 C 0.584 3.416 14 O -0.529 6.529 15 C -0.268 4.268 16 S 0.228 5.772 17 C -0.218 4.218 18 C 0.032 3.968 19 C 0.119 3.881 20 O -0.259 6.259 21 C 0.013 3.987 22 C 0.017 3.983 23 O -0.293 6.293 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.146 4.146 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.396 0.604 32 H 0.180 0.820 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -13.407 -13.545 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.004 4.004 12 N -0.352 5.352 13 C 0.370 3.630 14 O -0.409 6.409 15 C -0.388 4.388 16 S 0.491 5.509 17 C -0.355 4.355 18 C -0.025 4.025 19 C 0.057 3.943 20 O -0.172 6.172 21 C -0.064 4.064 22 C -0.059 4.059 23 O -0.209 6.209 24 C -0.190 4.190 25 C -0.165 4.165 26 C -0.184 4.184 27 H 0.065 0.935 28 H 0.221 0.779 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.198 0.802 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.312 -13.102 -12.493 18.151 hybrid contribution 0.651 0.975 -1.439 1.856 sum -0.660 -12.128 -13.932 18.483 Atomic orbital electron populations 1.69640 1.05037 1.25824 1.57335 1.24704 0.95457 0.97562 1.02589 0.86320 0.78630 0.83640 0.77935 1.21227 1.21733 1.21232 1.19059 0.91068 0.83634 1.42976 0.91170 1.42051 1.06091 0.99042 1.86790 1.20829 0.93082 0.87476 0.90667 1.21882 0.90362 1.00752 0.87408 1.45654 1.10643 1.72993 1.05955 1.15526 0.87532 0.77995 0.81914 1.90845 1.17044 1.50927 1.82073 1.22742 0.99125 1.21656 0.95309 1.84357 0.95517 1.69631 1.01347 1.24980 1.01229 1.11306 0.98028 1.18206 0.92238 1.07605 0.84443 1.18849 0.84910 0.99752 0.90750 1.87214 1.22083 1.78951 1.28942 1.23701 1.01450 0.99030 0.82203 1.23669 0.82377 1.01319 0.98523 1.87105 1.33888 1.84212 1.15691 1.23304 0.96364 1.00379 0.98974 1.22625 0.98512 0.99519 0.95851 1.23162 0.99919 0.97883 0.97417 0.93463 0.77913 0.92567 0.91082 0.76997 0.80228 0.85795 0.90422 0.90276 0.85947 0.91285 0.90690 0.90019 0.92731 0.91640 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.95 13.07 55.49 0.73 -26.22 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.26 9.05 -15.06 -0.14 -6.40 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.19 5.19 -46.48 -0.24 -16.43 16 10 C 0.17 3.23 0.81 -131.00 -0.11 3.12 16 11 C 0.12 2.34 5.08 -4.04 -0.02 2.32 16 12 N -0.70 -12.93 5.41 -63.20 -0.34 -13.27 16 13 C 0.58 11.33 7.59 -14.93 -0.11 11.22 16 14 O -0.53 -11.90 15.86 -11.90 -0.19 -12.09 16 15 C -0.27 -4.44 6.25 -38.65 -0.24 -4.68 16 16 S 0.23 2.90 22.17 -107.50 -2.38 0.52 16 17 C -0.22 -2.51 11.17 29.31 0.33 -2.19 16 18 C 0.03 0.42 6.54 -40.38 -0.26 0.16 16 19 C 0.12 1.86 6.58 -39.35 -0.26 1.60 16 20 O -0.26 -4.04 9.60 -49.17 -0.47 -4.52 16 21 C 0.01 0.12 7.13 37.28 0.27 0.39 16 22 C 0.02 0.15 7.15 37.28 0.27 0.41 16 23 O -0.29 -3.42 10.78 -35.40 -0.38 -3.80 16 24 C -0.15 -2.58 7.28 -25.92 -0.19 -2.77 16 25 C -0.13 -1.98 7.99 -25.92 -0.21 -2.19 16 26 C -0.15 -2.26 7.03 -25.92 -0.18 -2.44 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 28 H 0.39 9.49 7.87 -40.82 -0.32 9.17 16 29 H 0.06 1.00 8.01 -51.93 -0.42 0.59 16 30 H 0.07 1.58 7.80 -51.93 -0.41 1.17 16 31 H 0.40 6.80 7.23 -40.82 -0.29 6.50 16 32 H 0.18 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 38 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.08 1.08 8.10 -51.92 -0.42 0.66 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -33.28 364.13 -9.38 -42.66 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.61 Total: 12.10 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.95 Total: -1.73 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.14 Total: -55.93 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.04 Total: -20.40 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.38 Total: 0.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.28 -9.38 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.402 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds