Wall clock time and date at job start Tue Mar 31 2020 21:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48499 * 109.46934 * 239.99873 * 3 2 1 5 5 H 1.48500 * 109.47338 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46975 * 120.00003 * 3 2 1 7 7 C 1.38807 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00002 * 173.78172 * 9 7 2 11 11 C 1.52999 * 112.85309 * 294.86236 * 10 9 7 12 12 N 1.46497 * 109.46844 * 292.10144 * 11 10 9 13 13 C 1.34786 * 119.99716 * 180.21557 * 12 11 10 14 14 O 1.21775 * 119.99548 * 359.72635 * 13 12 11 15 15 C 1.41707 * 119.99729 * 179.72312 * 13 12 11 16 16 S 1.75661 * 125.10645 * 0.02854 * 15 13 12 17 17 C 1.75553 * 91.21205 * 179.97438 * 16 15 13 18 18 C 1.34198 * 110.68272 * 359.97050 * 17 16 15 19 19 C 1.37151 * 125.10100 * 179.71862 * 15 13 12 20 20 O 1.37662 * 124.48033 * 0.29992 * 19 15 13 21 21 C 1.43374 * 114.50034 * 163.25074 * 20 19 15 22 22 C 1.53228 * 109.13091 * 46.53484 * 21 20 19 23 23 O 1.38245 * 124.14738 * 180.21085 * 18 17 16 24 24 C 1.53785 * 113.68978 * 66.13391 * 10 9 7 25 25 C 1.53772 * 87.08385 * 89.12319 * 24 10 9 26 26 C 1.53778 * 87.08240 * 25.43124 * 25 24 10 27 27 H 0.97000 * 119.99788 * 0.02562 * 1 2 3 28 28 H 0.96994 * 119.99682 * 353.78191 * 9 7 2 29 29 H 1.08998 * 109.46917 * 172.09651 * 11 10 9 30 30 H 1.08999 * 109.46503 * 52.10158 * 11 10 9 31 31 H 0.96991 * 120.00416 * 359.94264 * 12 11 10 32 32 H 1.08005 * 124.65660 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.52932 * 166.42794 * 21 20 19 34 34 H 1.08998 * 109.53351 * 286.63814 * 21 20 19 35 35 H 1.09000 * 109.52003 * 57.62712 * 22 21 20 36 36 H 1.09000 * 109.52038 * 177.75776 * 22 21 20 37 37 H 1.08997 * 113.61417 * 203.67763 * 24 10 9 38 38 H 1.09004 * 113.61390 * 334.57630 * 24 10 9 39 39 H 1.09002 * 113.61684 * 270.88817 * 25 24 10 40 40 H 1.09002 * 113.61705 * 139.98093 * 25 24 10 41 41 H 1.08999 * 113.61892 * 220.01821 * 26 25 24 42 42 H 1.09007 * 113.61081 * 89.11594 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0515 -3.6530 -0.1396 11 6 2.7384 -3.7986 -1.4990 12 7 1.7235 -3.9318 -2.5470 13 6 2.0984 -4.0778 -3.8334 14 8 3.2806 -4.0939 -4.1249 15 6 1.1168 -4.2125 -4.8465 16 16 -0.6192 -4.2070 -4.5783 17 6 -0.9227 -4.4140 -6.2949 18 6 0.2318 -4.4762 -6.9762 19 6 1.3795 -4.3607 -6.1845 20 8 2.6424 -4.4052 -6.7305 21 6 2.6962 -4.9340 -8.0620 22 6 1.5938 -4.2847 -8.9052 23 8 0.3163 -4.6322 -8.3473 24 6 2.9701 -3.9713 1.0520 25 6 1.7623 -4.6734 1.6945 26 6 1.2262 -4.8846 0.2688 27 1 -0.4850 0.8401 -0.0004 28 1 0.3598 -2.3905 0.0890 29 1 3.3726 -4.6851 -1.4924 30 1 3.3486 -2.9167 -1.6939 31 1 0.7819 -3.9189 -2.3148 32 1 -1.9038 -4.4817 -6.7414 33 1 3.6688 -4.7142 -8.5024 34 1 2.5442 -6.0130 -8.0321 35 1 1.7205 -3.2021 -8.8990 36 1 1.6541 -4.6527 -9.9294 37 1 3.7877 -4.6482 0.8044 38 1 3.3015 -3.0870 1.5963 39 1 1.1434 -4.0111 2.2999 40 1 2.0179 -5.6010 2.2068 41 1 0.1498 -4.7377 0.1807 42 1 1.5671 -5.8114 -0.1930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700141618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:31 Heat of formation + Delta-G solvation = -53.921087 kcal Electronic energy + Delta-G solvation = -27279.850382 eV Core-core repulsion = 23352.948090 eV Total energy + Delta-G solvation = -3926.902292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12658 -40.95298 -39.85209 -38.06943 -36.69269 -35.36403 -35.19670 -31.99513 -31.20537 -30.78542 -28.68214 -26.71972 -26.06436 -25.35135 -24.71899 -23.14989 -22.07295 -20.39335 -20.30158 -19.60526 -19.10691 -18.40150 -18.10877 -17.47764 -16.86561 -16.73388 -16.43657 -16.15359 -15.84041 -15.78076 -15.73804 -15.38901 -15.27865 -15.06534 -14.66493 -14.30115 -14.10203 -13.85558 -13.55073 -13.08670 -12.96028 -12.88877 -12.56980 -12.39747 -12.20375 -12.11159 -12.03653 -11.92573 -11.80251 -11.59840 -11.47792 -11.18896 -10.91008 -10.74917 -10.11905 -9.63434 -9.07252 -8.97963 -7.92849 -5.19566 -0.73496 0.25381 0.51145 1.04878 1.44960 1.46802 1.51792 2.05346 2.21553 2.25092 2.47120 2.55278 3.08176 3.38865 3.53772 3.74915 3.81711 3.91616 3.94272 3.98557 4.03114 4.11209 4.20748 4.26705 4.39344 4.50295 4.58268 4.64712 4.82305 4.85814 4.90326 4.92075 5.00526 5.13946 5.30071 5.42198 5.47214 5.58838 5.62855 5.71208 5.96903 6.31418 6.50899 7.16574 7.37742 8.10626 8.35392 9.29337 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003523 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.508367 B = 7946.912527 C = 8652.965949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.955 3.045 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.226 4.226 8 H 0.065 0.935 9 N -0.704 5.704 10 C 0.157 3.843 11 C 0.130 3.870 12 N -0.699 5.699 13 C 0.582 3.418 14 O -0.574 6.574 15 C -0.321 4.321 16 S 0.256 5.744 17 C -0.191 4.191 18 C 0.015 3.985 19 C 0.121 3.879 20 O -0.295 6.295 21 C 0.003 3.997 22 C 0.016 3.984 23 O -0.297 6.297 24 C -0.148 4.148 25 C -0.118 4.118 26 C -0.130 4.130 27 H 0.250 0.750 28 H 0.378 0.622 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.402 0.598 32 H 0.216 0.784 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 -15.134 -14.766 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.255 4.255 3 Si 0.786 3.214 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.083 0.917 9 N -0.344 5.344 10 C 0.065 3.935 11 C 0.004 3.996 12 N -0.349 5.349 13 C 0.371 3.629 14 O -0.456 6.456 15 C -0.441 4.441 16 S 0.520 5.480 17 C -0.329 4.329 18 C -0.041 4.041 19 C 0.059 3.941 20 O -0.209 6.209 21 C -0.072 4.072 22 C -0.059 4.059 23 O -0.213 6.213 24 C -0.188 4.188 25 C -0.155 4.155 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.211 0.789 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.237 0.763 32 H 0.233 0.767 33 H 0.168 0.832 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.182 0.818 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.091 -14.863 -13.704 20.324 hybrid contribution 0.955 1.425 -1.186 2.085 sum -1.136 -13.438 -14.889 20.089 Atomic orbital electron populations 1.69753 1.05943 1.25792 1.59436 1.25290 0.96200 1.00071 1.03974 0.85492 0.77479 0.80752 0.77718 1.21763 1.21971 1.20517 1.19262 0.90979 0.85006 1.40590 0.91743 1.42081 1.05763 0.99829 1.86723 1.21141 0.94472 0.87165 0.90733 1.21745 0.90448 0.99629 0.87806 1.45613 1.10736 1.72802 1.05764 1.15914 0.87638 0.76909 0.82452 1.90796 1.18946 1.53155 1.82737 1.22632 1.00841 1.25395 0.95211 1.84167 0.92495 1.69075 1.02284 1.25450 1.02314 1.07932 0.97180 1.18227 0.91731 1.08844 0.85291 1.19208 0.85804 0.98222 0.90912 1.87154 1.22735 1.79166 1.31803 1.24109 1.03512 0.99517 0.80094 1.23950 0.80692 1.01316 0.99981 1.87099 1.35423 1.84329 1.14464 1.23323 0.97566 1.00152 0.97773 1.22543 0.96885 1.00247 0.95826 1.23130 0.99705 0.96865 0.97028 0.94118 0.78851 0.91001 0.95039 0.76300 0.76710 0.83217 0.89578 0.90581 0.81752 0.88798 0.93290 0.91854 0.89470 0.91298 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.58 13.07 21.65 0.28 -56.30 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.96 46.80 29.55 68.60 2.03 48.83 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.23 -12.25 9.05 84.03 0.76 -11.49 16 8 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 9 N -0.70 -33.11 5.19 -300.96 -1.56 -34.67 16 10 C 0.16 5.80 0.81 4.13 0.00 5.81 16 11 C 0.13 5.05 5.08 86.38 0.44 5.49 16 12 N -0.70 -26.17 5.41 -472.03 -2.55 -28.73 16 13 C 0.58 23.30 7.59 85.10 0.65 23.94 16 14 O -0.57 -26.93 15.86 11.69 0.19 -26.74 16 15 C -0.32 -10.76 6.25 22.87 0.14 -10.62 16 16 S 0.26 6.22 22.17 -56.49 -1.25 4.97 16 17 C -0.19 -3.93 11.17 66.90 0.75 -3.18 16 18 C 0.02 0.38 6.54 21.75 0.14 0.52 16 19 C 0.12 3.79 6.58 22.42 0.15 3.93 16 20 O -0.29 -9.31 9.60 -90.64 -0.87 -10.18 16 21 C 0.00 0.05 7.13 72.06 0.51 0.56 16 22 C 0.02 0.23 7.15 72.06 0.52 0.75 16 23 O -0.30 -6.21 10.78 -113.04 -1.22 -7.43 16 24 C -0.15 -4.93 7.28 31.12 0.23 -4.71 16 25 C -0.12 -3.39 7.99 31.12 0.25 -3.14 16 26 C -0.13 -3.73 7.03 31.12 0.22 -3.51 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 28 H 0.38 18.86 7.87 -92.71 -0.73 18.13 16 29 H 0.07 2.55 8.01 -2.39 -0.02 2.53 16 30 H 0.03 1.46 7.80 -2.39 -0.02 1.44 16 31 H 0.40 13.87 7.23 -92.71 -0.67 13.20 16 32 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.17 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.09 2.66 8.01 -2.39 -0.02 2.64 16 38 H 0.05 1.88 7.87 -2.38 -0.02 1.86 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 42 H 0.10 2.51 8.10 -2.38 -0.02 2.49 16 Total: -1.00 -75.16 364.13 -0.07 -75.23 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.33 Total: 33.71 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.22 Total: 1.30 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -3.83 Total: -119.70 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.90 Total: -44.34 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.25 Total: 4.97 kcal Total: -75.16 -0.07 -75.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.310 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds