Wall clock time and date at job start Tue Mar 31 2020 20:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99836 * 2 1 4 4 H 1.08993 * 110.78196 * 31.79010 * 3 2 1 5 5 C 1.54327 * 110.72400 * 268.54642 * 3 2 1 6 6 N 1.47022 * 107.27336 * 219.44644 * 5 3 2 7 7 C 1.34777 * 125.64528 * 178.90269 * 6 5 3 8 8 O 1.21282 * 119.99501 * 180.02562 * 7 6 5 9 9 C 1.50696 * 120.00291 * 0.02824 * 7 6 5 10 10 S 1.81001 * 109.47053 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99718 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00118 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99610 * 179.97438 * 11 10 9 14 14 N 1.31633 * 120.00205 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46947 * 60.00453 * 15 13 11 17 17 H 1.48501 * 109.47129 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47146 * 299.99994 * 15 13 11 19 19 C 1.47425 * 108.70334 * 358.94217 * 6 5 3 20 20 C 1.54915 * 104.83334 * 24.12789 * 19 6 5 21 21 H 1.09001 * 111.00387 * 81.05917 * 20 19 6 22 22 N 1.46496 * 111.00547 * 204.91767 * 20 19 6 23 23 C 1.34774 * 119.99681 * 267.19663 * 22 20 19 24 24 O 1.21273 * 120.00550 * 359.97438 * 23 22 20 25 25 C 1.50703 * 119.99732 * 179.97438 * 23 22 20 26 26 F 1.39894 * 109.47131 * 184.99760 * 25 23 22 27 27 F 1.39898 * 109.47627 * 305.00398 * 25 23 22 28 28 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46602 * 299.99381 * 1 2 3 30 30 H 1.08995 * 109.46980 * 59.99438 * 1 2 3 31 31 H 1.08997 * 109.87800 * 338.86828 * 5 3 2 32 32 H 1.09000 * 109.87987 * 99.87068 * 5 3 2 33 33 H 1.08998 * 109.47080 * 299.99828 * 9 7 6 34 34 H 1.09005 * 109.47183 * 59.99784 * 9 7 6 35 35 H 0.97004 * 119.99722 * 179.97438 * 14 13 11 36 36 H 1.08997 * 110.36855 * 142.96531 * 19 6 5 37 37 H 1.08997 * 110.36655 * 265.29403 * 19 6 5 38 38 H 0.97002 * 120.00223 * 87.19063 * 22 20 19 39 39 H 1.09004 * 109.46670 * 65.00426 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0110 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5562 2.4940 -1.4450 7 6 4.1464 3.0488 -2.5221 8 8 5.2168 3.6073 -2.4066 9 6 3.4765 2.9753 -3.8700 10 16 4.5090 3.8058 -5.1030 11 6 3.5156 3.5742 -6.5398 12 1 2.5763 3.0462 -6.4675 13 6 3.9399 4.0714 -7.7642 14 7 5.0845 4.7155 -7.8522 15 14 2.8865 3.8265 -9.2874 16 1 1.5616 4.4646 -9.0807 17 1 3.5576 4.4462 -10.4582 18 1 2.7032 2.3737 -9.5341 19 6 4.0980 2.4921 -0.0739 20 6 3.4354 1.2718 0.6128 21 1 3.9515 0.3481 0.3507 22 7 3.3864 1.4495 2.0661 23 6 4.3815 0.9690 2.8376 24 8 5.3173 0.3891 2.3288 25 6 4.3314 1.1523 4.3326 26 9 5.5176 0.6755 4.9008 27 9 4.1844 2.5111 4.6312 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 2.3088 0.9350 -2.1183 32 1 1.4703 2.4670 -1.7530 33 1 3.3417 1.9312 -4.1522 34 1 2.5047 3.4665 -3.8200 35 1 5.3811 5.0626 -8.7081 36 1 5.1813 2.3740 -0.0942 37 1 3.8255 3.4123 0.4429 38 1 2.6378 1.9130 2.4731 39 1 3.4855 0.5974 4.7385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702291735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:08 Heat of formation + Delta-G solvation = -200.247842 kcal Electronic energy + Delta-G solvation = -26767.082562 eV Core-core repulsion = 22279.605536 eV Total energy + Delta-G solvation = -4487.477026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.65294 -47.67762 -40.81799 -39.55838 -38.43517 -36.55310 -34.82620 -32.45028 -31.21531 -29.47959 -29.06058 -27.42501 -26.90635 -25.50166 -23.57503 -21.96732 -21.45182 -19.64927 -19.08841 -18.30982 -18.07324 -17.75654 -17.44189 -16.97493 -16.06116 -15.84220 -15.62071 -15.51687 -15.32115 -14.88830 -14.81869 -14.61089 -14.45529 -14.01600 -13.91904 -13.73186 -13.50168 -13.32114 -12.98272 -12.75037 -12.66542 -12.58586 -12.35888 -12.05384 -11.85498 -11.27108 -11.06895 -11.05577 -10.79965 -10.59119 -10.31890 -9.91041 -9.84361 -9.46322 -9.08012 -8.68411 -8.27297 -6.53327 -6.23440 -3.94843 1.59690 1.92607 2.68628 2.94678 3.12833 3.21699 3.22382 3.27118 3.31395 3.49095 3.57183 3.88187 4.04093 4.08493 4.18046 4.20575 4.34941 4.66265 4.82407 4.90516 4.92214 4.94841 5.11496 5.24833 5.26984 5.37318 5.41022 5.50264 5.64311 5.69328 5.84305 6.07556 6.20079 6.56754 6.60084 7.29008 7.47113 7.57073 8.32727 8.43351 9.21482 10.83927 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002350 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.755286 B =11912.996849 C =12971.243966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.072 3.928 4 H 0.087 0.913 5 C 0.084 3.916 6 N -0.623 5.623 7 C 0.551 3.449 8 O -0.507 6.507 9 C -0.147 4.147 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.100 3.900 20 C 0.135 3.865 21 H 0.124 0.876 22 N -0.702 5.702 23 C 0.475 3.525 24 O -0.489 6.489 25 C 0.261 3.739 26 F -0.174 7.174 27 F -0.187 7.187 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.408 0.592 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.917 -8.999 25.129 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.013 3.987 4 H 0.105 0.895 5 C -0.041 4.041 6 N -0.362 5.362 7 C 0.340 3.660 8 O -0.380 6.380 9 C -0.297 4.297 10 S 0.168 5.832 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.024 4.024 20 C 0.030 3.970 21 H 0.141 0.859 22 N -0.355 5.355 23 C 0.256 3.744 24 O -0.361 6.361 25 C 0.203 3.797 26 F -0.155 7.155 27 F -0.168 7.168 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.243 0.757 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.308 -8.613 24.742 28.154 hybrid contribution -2.556 -0.291 -0.833 2.704 sum -12.864 -8.904 23.910 28.573 Atomic orbital electron populations 1.22897 0.80219 1.03400 1.00436 1.88009 1.20330 1.25624 1.94773 1.23363 0.93923 0.86029 0.95390 0.89475 1.22435 0.86801 0.97880 0.96982 1.48270 1.21671 1.58458 1.07817 1.20094 0.84836 0.76966 0.84108 1.90736 1.20996 1.41702 1.84588 1.23513 1.04554 1.05894 0.95771 1.85446 1.27700 1.71547 0.98516 1.22805 1.08608 1.42865 0.94165 0.90955 1.24996 0.95446 0.94486 0.98632 1.70009 1.19611 1.34513 1.26084 0.86217 0.79854 0.78613 0.80772 1.19945 1.20788 1.19913 1.22451 1.00803 0.96695 0.82486 1.22293 0.95616 1.00884 0.78235 0.85853 1.45640 1.24621 1.58325 1.06939 1.21114 0.83601 0.80578 0.89131 1.90880 1.32238 1.39412 1.73568 1.21604 0.87883 0.78928 0.91247 1.93083 1.49588 1.87732 1.85070 1.93076 1.95942 1.33641 1.94149 0.89130 0.93764 0.93303 0.89558 0.90312 0.89087 0.89214 0.92075 0.88954 0.90819 0.75666 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.88 101.05 1.10 1.23 16 2 O -0.37 -2.88 10.43 -35.23 -0.37 -3.25 16 3 C 0.07 0.52 3.05 -24.89 -0.08 0.45 16 4 H 0.09 0.39 7.75 -51.93 -0.40 -0.01 16 5 C 0.08 0.82 6.26 -3.06 -0.02 0.80 16 6 N -0.62 -8.62 3.33 -170.52 -0.57 -9.19 16 7 C 0.55 10.50 7.87 -10.99 -0.09 10.41 16 8 O -0.51 -11.77 16.12 5.56 0.09 -11.68 16 9 C -0.15 -2.95 5.35 36.00 0.19 -2.76 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 15 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.10 1.18 6.60 -2.53 -0.02 1.17 16 20 C 0.14 1.21 3.15 -65.78 -0.21 1.00 16 21 H 0.12 1.39 7.54 -51.93 -0.39 1.00 16 22 N -0.70 -4.48 5.20 -51.72 -0.27 -4.75 16 23 C 0.47 4.07 7.63 -10.98 -0.08 3.99 16 24 O -0.49 -6.58 16.26 5.56 0.09 -6.49 16 25 C 0.26 1.51 5.72 36.01 0.21 1.72 16 26 F -0.17 -1.60 16.95 2.25 0.04 -1.56 16 27 F -0.19 -1.24 17.32 2.25 0.04 -1.20 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.14 8.11 -51.93 -0.42 -0.28 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 34 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.09 1.32 8.04 -51.93 -0.42 0.91 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.41 1.18 8.57 -40.82 -0.35 0.83 16 39 H 0.14 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -38.14 362.93 -5.68 -43.81 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.90 Total: -3.35 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 1.21 Total: 5.15 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.10 Total: -39.30 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.19 Total: -21.42 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.14 -5.68 -43.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702291735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.433 kcal (2) G-P(sol) polarization free energy of solvation -38.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds