Wall clock time and date at job start Tue Mar 31 2020 20:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99836 * 2 1 4 4 H 1.08993 * 110.78196 * 31.79010 * 3 2 1 5 5 C 1.54327 * 110.72400 * 268.54642 * 3 2 1 6 6 N 1.47022 * 107.27336 * 219.44644 * 5 3 2 7 7 C 1.34777 * 125.64528 * 178.90269 * 6 5 3 8 8 O 1.21282 * 119.99501 * 180.02562 * 7 6 5 9 9 C 1.50696 * 120.00291 * 0.02824 * 7 6 5 10 10 S 1.81001 * 109.47053 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99718 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00118 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99610 * 179.97438 * 11 10 9 14 14 N 1.31633 * 120.00205 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46947 * 60.00453 * 15 13 11 17 17 H 1.48501 * 109.47129 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47146 * 299.99994 * 15 13 11 19 19 C 1.47425 * 108.70334 * 358.94217 * 6 5 3 20 20 C 1.54915 * 104.83334 * 24.12789 * 19 6 5 21 21 H 1.09001 * 111.00387 * 81.05917 * 20 19 6 22 22 N 1.46496 * 111.00547 * 204.91767 * 20 19 6 23 23 C 1.34774 * 119.99681 * 267.19663 * 22 20 19 24 24 O 1.21273 * 120.00550 * 359.97438 * 23 22 20 25 25 C 1.50703 * 119.99732 * 179.97438 * 23 22 20 26 26 F 1.39894 * 109.47131 * 184.99760 * 25 23 22 27 27 F 1.39898 * 109.47627 * 305.00398 * 25 23 22 28 28 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46602 * 299.99381 * 1 2 3 30 30 H 1.08995 * 109.46980 * 59.99438 * 1 2 3 31 31 H 1.08997 * 109.87800 * 338.86828 * 5 3 2 32 32 H 1.09000 * 109.87987 * 99.87068 * 5 3 2 33 33 H 1.08998 * 109.47080 * 299.99828 * 9 7 6 34 34 H 1.09005 * 109.47183 * 59.99784 * 9 7 6 35 35 H 0.97004 * 119.99722 * 179.97438 * 14 13 11 36 36 H 1.08997 * 110.36855 * 142.96531 * 19 6 5 37 37 H 1.08997 * 110.36655 * 265.29403 * 19 6 5 38 38 H 0.97002 * 120.00223 * 87.19063 * 22 20 19 39 39 H 1.09004 * 109.46670 * 65.00426 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0110 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5562 2.4940 -1.4450 7 6 4.1464 3.0488 -2.5221 8 8 5.2168 3.6073 -2.4066 9 6 3.4765 2.9753 -3.8700 10 16 4.5090 3.8058 -5.1030 11 6 3.5156 3.5742 -6.5398 12 1 2.5763 3.0462 -6.4675 13 6 3.9399 4.0714 -7.7642 14 7 5.0845 4.7155 -7.8522 15 14 2.8865 3.8265 -9.2874 16 1 1.5616 4.4646 -9.0807 17 1 3.5576 4.4462 -10.4582 18 1 2.7032 2.3737 -9.5341 19 6 4.0980 2.4921 -0.0739 20 6 3.4354 1.2718 0.6128 21 1 3.9515 0.3481 0.3507 22 7 3.3864 1.4495 2.0661 23 6 4.3815 0.9690 2.8376 24 8 5.3173 0.3891 2.3288 25 6 4.3314 1.1523 4.3326 26 9 5.5176 0.6755 4.9008 27 9 4.1844 2.5111 4.6312 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 2.3088 0.9350 -2.1183 32 1 1.4703 2.4670 -1.7530 33 1 3.3417 1.9312 -4.1522 34 1 2.5047 3.4665 -3.8200 35 1 5.3811 5.0626 -8.7081 36 1 5.1813 2.3740 -0.0942 37 1 3.8255 3.4123 0.4429 38 1 2.6378 1.9130 2.4731 39 1 3.4855 0.5974 4.7385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702291735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:08 Heat of formation + Delta-G solvation = -230.946593 kcal Electronic energy + Delta-G solvation = -26768.413760 eV Core-core repulsion = 22279.605536 eV Total energy + Delta-G solvation = -4488.808224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.18476 -48.22948 -41.69624 -40.57337 -39.40517 -37.44065 -35.72263 -34.59352 -32.34489 -30.57772 -29.89336 -28.27985 -27.65406 -27.36201 -24.52288 -22.65728 -22.17797 -20.91349 -19.89654 -19.51574 -18.81923 -18.65205 -18.25939 -18.07175 -16.92798 -16.86761 -16.81814 -16.75016 -16.40675 -15.97934 -15.85965 -15.57573 -15.48294 -15.01691 -14.71407 -14.55664 -14.49142 -14.36234 -14.20220 -13.98946 -13.55332 -13.46473 -13.23528 -13.17979 -13.09858 -12.86627 -12.64219 -12.51531 -11.89350 -11.77595 -11.30703 -11.13687 -11.13291 -10.88017 -10.47474 -10.30453 -9.84838 -8.70095 -8.35137 -6.14584 0.90430 1.14660 1.33387 1.43959 1.45424 1.48158 1.54874 1.93077 2.26390 2.58193 2.84625 2.99084 3.02304 3.06417 3.31643 3.37047 3.58885 3.75051 3.79305 3.80984 3.97830 4.03204 4.20087 4.40079 4.48047 4.53100 4.58074 4.60388 4.67142 4.68736 4.93731 4.98746 5.15839 5.40709 6.03121 6.10575 6.18429 6.20711 6.73364 6.99077 7.05738 8.73955 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002350 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.755286 B =11912.996849 C =12971.243966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.130 0.870 5 C 0.072 3.928 6 N -0.612 5.612 7 C 0.549 3.451 8 O -0.563 6.563 9 C -0.118 4.118 10 S -0.154 6.154 11 C -0.545 4.545 12 H 0.085 0.915 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.098 3.902 20 C 0.144 3.856 21 H 0.096 0.904 22 N -0.681 5.681 23 C 0.471 3.529 24 O -0.548 6.548 25 C 0.267 3.733 26 F -0.196 7.196 27 F -0.189 7.189 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.271 0.729 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.430 0.570 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.084 -9.804 26.500 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.306 6.306 3 C 0.031 3.969 4 H 0.147 0.853 5 C -0.051 4.051 6 N -0.349 5.349 7 C 0.337 3.663 8 O -0.440 6.440 9 C -0.269 4.269 10 S 0.074 5.926 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.192 4.192 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.027 4.027 20 C 0.037 3.963 21 H 0.115 0.885 22 N -0.335 5.335 23 C 0.253 3.747 24 O -0.424 6.424 25 C 0.210 3.790 26 F -0.177 7.177 27 F -0.171 7.171 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.571 -9.431 26.182 31.412 hybrid contribution -1.315 -0.103 -1.126 1.735 sum -15.886 -9.534 25.055 31.161 Atomic orbital electron populations 1.23121 0.78411 1.04287 1.01847 1.88004 1.22281 1.25619 1.94712 1.23258 0.93176 0.86965 0.93470 0.85290 1.22836 0.85056 0.97955 0.99263 1.48094 1.22807 1.56655 1.07306 1.19869 0.84291 0.77215 0.84918 1.90713 1.23295 1.44603 1.85437 1.23294 1.03720 1.05805 0.94121 1.85670 1.31534 1.73524 1.01920 1.23152 1.08847 1.42901 0.94358 0.89662 1.26165 0.96796 0.93825 1.02456 1.70188 1.21814 1.35836 1.27035 0.84982 0.78059 0.79087 0.75729 1.18358 1.20532 1.18667 1.22571 0.99175 0.99139 0.81782 1.21942 0.96663 0.98085 0.79598 0.88544 1.45441 1.24845 1.57522 1.05668 1.21777 0.82815 0.79433 0.90634 1.90865 1.34497 1.42122 1.74930 1.22009 0.88731 0.79261 0.88964 1.93039 1.51458 1.88029 1.85154 1.93074 1.95892 1.34170 1.93922 0.88691 0.91352 0.92833 0.89993 0.87797 0.87514 0.86734 0.91980 0.92475 0.88781 0.73034 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.88 113.37 1.23 1.34 16 2 O -0.39 -4.77 10.43 -148.98 -1.55 -6.32 16 3 C 0.09 0.99 3.05 31.79 0.10 1.09 16 4 H 0.13 0.41 7.75 -2.39 -0.02 0.39 16 5 C 0.07 1.22 6.26 86.73 0.54 1.77 16 6 N -0.61 -16.50 3.33 -811.79 -2.70 -19.20 16 7 C 0.55 21.21 7.87 87.66 0.69 21.90 16 8 O -0.56 -27.45 16.12 -3.04 -0.05 -27.50 16 9 C -0.12 -4.73 5.35 71.23 0.38 -4.35 16 10 S -0.15 -8.61 20.57 -56.49 -1.16 -9.78 16 11 C -0.54 -30.94 9.50 67.95 0.65 -30.29 16 12 H 0.09 4.44 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.70 5.49 84.86 0.47 1.16 16 14 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 15 Si 1.00 43.21 29.55 68.60 2.03 45.24 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 C 0.10 2.27 6.60 86.86 0.57 2.85 16 20 C 0.14 2.37 3.15 46.39 0.15 2.51 16 21 H 0.10 2.20 7.54 -2.39 -0.02 2.18 16 22 N -0.68 -7.02 5.20 -435.95 -2.27 -9.28 16 23 C 0.47 7.49 7.63 87.66 0.67 8.16 16 24 O -0.55 -15.22 16.26 -3.01 -0.05 -15.27 16 25 C 0.27 2.42 5.72 71.24 0.41 2.83 16 26 F -0.20 -3.41 16.95 44.97 0.76 -2.65 16 27 F -0.19 -2.01 17.32 44.97 0.78 -1.23 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.07 8.11 -2.39 -0.02 0.05 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.08 1.52 8.06 -2.39 -0.02 1.50 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.43 0.64 8.57 -92.71 -0.79 -0.15 16 39 H 0.20 -0.57 8.14 -2.38 -0.02 -0.59 16 Total: -1.00 -90.23 362.93 2.23 -88.00 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.30 Total: 5.02 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.85 Total: 8.96 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -4.68 Total: -84.48 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.65 Total: -49.09 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.54 Total: -3.87 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -90.23 2.23 -88.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702291735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.942 kcal (2) G-P(sol) polarization free energy of solvation -90.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds