Wall clock time and date at job start Tue Mar 31 2020 21:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88701 * 305.70223 * 11 10 9 13 13 C 1.55157 * 111.00621 * 181.81740 * 11 10 9 14 14 C 1.54367 * 102.92161 * 206.45419 * 13 11 10 15 15 N 1.47023 * 107.29080 * 22.13997 * 14 13 11 16 16 C 1.34773 * 125.65446 * 181.12678 * 15 14 13 17 17 O 1.21768 * 120.00270 * 179.97438 * 16 15 14 18 18 C 1.41715 * 119.99444 * 359.95937 * 16 15 14 19 19 S 1.75655 * 125.10479 * 0.02562 * 18 16 15 20 20 C 1.75560 * 91.21521 * 179.97438 * 19 18 16 21 21 C 1.34204 * 110.67475 * 359.97438 * 20 19 18 22 22 C 1.37155 * 125.10033 * 179.71693 * 18 16 15 23 23 O 1.37661 * 124.48302 * 0.83676 * 22 18 16 24 24 C 1.43373 * 114.57069 * 162.91830 * 23 22 18 25 25 C 1.53220 * 109.14290 * 46.29036 * 24 23 22 26 26 O 1.38248 * 124.14213 * 180.12137 * 21 20 19 27 27 C 1.47431 * 108.70068 * 1.09205 * 15 14 13 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 31 31 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 32 32 H 1.09006 * 110.71809 * 324.78767 * 13 11 10 33 33 H 1.09004 * 110.72016 * 88.06320 * 13 11 10 34 34 H 1.08997 * 109.85094 * 262.73401 * 14 13 11 35 35 H 1.09003 * 110.03326 * 141.64576 * 14 13 11 36 36 H 1.08000 * 124.66343 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.52705 * 286.39211 * 24 23 22 38 38 H 1.09002 * 109.58230 * 166.21889 * 24 23 22 39 39 H 1.09000 * 109.52606 * 177.84201 * 25 24 23 40 40 H 1.09005 * 109.52117 * 57.64956 * 25 24 23 41 41 H 1.08999 * 110.36831 * 217.03642 * 27 15 14 42 42 H 1.08997 * 110.46279 * 94.75653 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3592 -4.7291 0.8245 13 6 1.8027 -6.1832 0.0437 14 6 0.7995 -7.1424 -0.6319 15 7 -0.0950 -6.3243 -1.4639 16 6 -1.1242 -6.7870 -2.2007 17 8 -1.8013 -6.0140 -2.8540 18 6 -1.4181 -8.1733 -2.2154 19 16 -0.5329 -9.4030 -1.3268 20 6 -1.5814 -10.6639 -1.9538 21 6 -2.5135 -10.1440 -2.7674 22 6 -2.4402 -8.7553 -2.9210 23 8 -3.3175 -8.0699 -3.7307 24 6 -4.0436 -8.8923 -4.6536 25 6 -4.5858 -10.1197 -3.9139 26 8 -3.4843 -10.8887 -3.4109 27 6 0.3199 -4.9135 -1.3579 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6853 -3.7142 -0.8912 31 1 2.6841 -3.7150 0.8887 32 1 2.7329 -6.1370 -0.5227 33 1 1.9917 -6.4850 1.0739 34 1 0.2211 -7.6683 0.1277 35 1 1.3317 -7.8607 -1.2556 36 1 -1.4894 -11.7135 -1.7166 37 1 -3.3791 -9.2143 -5.4554 38 1 -4.8736 -8.3245 -5.0742 39 1 -5.1714 -10.7301 -4.6013 40 1 -5.2157 -9.7966 -3.0850 41 1 -0.5527 -4.2604 -1.3577 42 1 0.9894 -4.6507 -2.1769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714374043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:03 Heat of formation + Delta-G solvation = -45.464168 kcal Electronic energy + Delta-G solvation = -26783.472416 eV Core-core repulsion = 22856.936843 eV Total energy + Delta-G solvation = -3926.535572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36840 -40.03810 -37.82295 -37.22995 -35.85028 -34.91249 -32.53207 -30.54395 -30.17450 -30.05645 -28.54624 -26.00795 -24.38252 -24.05105 -23.30334 -22.22156 -20.80496 -20.07724 -19.59944 -18.68242 -17.50881 -17.40282 -17.06718 -16.75829 -16.06667 -15.80798 -15.49409 -15.14962 -14.72169 -14.62080 -14.47493 -14.24373 -13.86351 -13.66937 -13.55286 -13.24323 -13.13828 -12.89187 -12.57572 -12.47683 -11.98312 -11.53565 -11.44090 -11.30867 -11.13213 -10.98343 -10.80533 -10.66551 -10.54569 -10.40011 -9.95420 -9.92728 -9.13920 -8.95203 -8.86042 -8.65039 -8.21815 -6.98334 -6.06635 -3.07001 0.11348 1.04502 1.28870 1.86024 2.85974 2.91494 3.14288 3.19481 3.54162 3.58235 3.72627 3.75801 4.12347 4.43661 4.44732 4.51356 4.55956 4.71249 4.83960 4.86283 4.95103 4.98090 5.09276 5.13842 5.20709 5.32590 5.50288 5.60406 5.65324 5.79719 5.87494 5.91505 5.94466 6.18962 6.24679 6.27204 6.39443 6.61778 6.72011 6.74504 7.48633 7.82987 8.17008 8.79355 9.25830 10.12228 10.26512 11.41830 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.021820 B = 0.002481 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.931299 B =11284.016056 C =12396.009022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.117 4.117 14 C 0.085 3.915 15 N -0.617 5.617 16 C 0.601 3.399 17 O -0.515 6.515 18 C -0.274 4.274 19 S 0.227 5.773 20 C -0.231 4.231 21 C 0.032 3.968 22 C 0.127 3.873 23 O -0.259 6.259 24 C 0.012 3.988 25 C 0.018 3.982 26 O -0.293 6.293 27 C 0.119 3.881 28 H 0.255 0.745 29 H 0.367 0.633 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.178 0.822 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -28.174 -4.779 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.155 4.155 14 C -0.040 4.040 15 N -0.352 5.352 16 C 0.390 3.610 17 O -0.392 6.392 18 C -0.394 4.394 19 S 0.492 5.508 20 C -0.367 4.367 21 C -0.024 4.024 22 C 0.066 3.934 23 O -0.172 6.172 24 C -0.064 4.064 25 C -0.059 4.059 26 O -0.209 6.209 27 C -0.002 4.002 28 H 0.067 0.933 29 H 0.201 0.799 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.196 0.804 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.275 -26.113 -4.265 26.661 hybrid contribution -1.510 -1.984 -1.076 2.715 sum -4.785 -28.097 -5.341 28.997 Atomic orbital electron populations 1.70876 1.06042 1.28506 1.53356 1.25794 0.97065 1.01038 1.00396 0.83236 0.74195 0.75610 0.75809 1.21038 1.22288 1.22264 1.20004 0.91990 0.85781 1.48686 0.91745 1.42374 1.04932 1.00919 1.90791 1.20515 0.92569 0.84241 0.98365 1.22633 0.98232 0.94881 0.96990 0.89662 1.22600 0.97694 0.93943 1.01294 1.22168 0.92740 0.94556 0.94508 1.48419 1.30347 1.09830 1.46639 1.15147 0.80020 0.85821 0.79998 1.90921 1.49001 1.57009 1.42308 1.22514 1.04238 0.98912 1.13715 1.84480 1.29485 0.91598 1.45271 1.25407 1.02035 1.05995 1.03313 1.18248 0.95164 0.88823 1.00119 1.18877 0.91264 0.89219 0.94082 1.87212 1.51102 1.31675 1.47209 1.23740 0.97870 0.93206 0.91599 1.23653 0.88149 0.94246 0.99814 1.87071 1.30498 1.32081 1.71264 1.22314 0.99824 0.80511 0.97574 0.93326 0.79928 0.95861 0.95650 0.89899 0.89564 0.90852 0.90763 0.80429 0.90250 0.85529 0.85749 0.90307 0.89908 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.85 13.70 55.49 0.76 -29.09 16 2 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 26.33 29.92 -169.99 -5.09 21.25 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.33 -9.55 9.99 -15.06 -0.15 -9.70 16 8 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.74 -18.89 5.49 -59.91 -0.33 -19.22 16 10 C 0.17 3.35 5.71 -4.05 -0.02 3.32 16 11 C -0.11 -1.68 3.07 -88.47 -0.27 -1.95 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.12 -1.30 6.42 -24.87 -0.16 -1.46 16 14 C 0.09 0.93 5.13 -3.04 -0.02 0.92 16 15 N -0.62 -9.38 3.33 -173.85 -0.58 -9.96 16 16 C 0.60 10.26 7.64 -14.93 -0.11 10.14 16 17 O -0.51 -10.90 16.11 -11.89 -0.19 -11.09 16 18 C -0.27 -3.80 6.20 -38.65 -0.24 -4.04 16 19 S 0.23 2.07 18.30 -107.50 -1.97 0.11 16 20 C -0.23 -2.07 11.17 29.31 0.33 -1.75 16 21 C 0.03 0.36 6.55 -40.38 -0.26 0.10 16 22 C 0.13 1.72 6.58 -39.35 -0.26 1.47 16 23 O -0.26 -3.65 9.60 -49.16 -0.47 -4.12 16 24 C 0.01 0.10 7.14 37.27 0.27 0.37 16 25 C 0.02 0.12 7.14 37.27 0.27 0.39 16 26 O -0.29 -2.93 10.77 -35.42 -0.38 -3.31 16 27 C 0.12 2.04 6.23 -2.52 -0.02 2.03 16 28 H 0.26 8.00 6.77 -40.82 -0.28 7.72 16 29 H 0.37 9.64 6.46 -40.82 -0.26 9.37 16 30 H 0.02 0.46 8.04 -51.93 -0.42 0.05 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 6.73 -51.72 -0.35 0.35 16 35 H 0.07 0.69 6.89 -51.93 -0.36 0.33 16 36 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.63 8.04 -51.93 -0.42 1.22 16 42 H 0.07 1.31 7.95 -51.93 -0.41 0.90 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -37.60 354.81 -9.15 -46.75 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.50 Total: 4.94 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.75 Total: -1.60 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.15 Total: -58.26 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.04 Total: -18.52 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.25 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.97 Total: 0.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.60 -9.15 -46.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714374043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.284 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds