Wall clock time and date at job start Tue Mar 31 2020 21:26:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00259 * 2 1
4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1
5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1
6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1
7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1
9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1
10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2
11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7
12 12 H 1.08997 * 110.88701 * 305.70223 * 11 10 9
13 13 C 1.55157 * 111.00621 * 181.81740 * 11 10 9
14 14 C 1.54367 * 102.92161 * 206.45419 * 13 11 10
15 15 N 1.47023 * 107.29080 * 22.13997 * 14 13 11
16 16 C 1.34773 * 125.65446 * 181.12678 * 15 14 13
17 17 O 1.21768 * 120.00270 * 179.97438 * 16 15 14
18 18 C 1.41715 * 119.99444 * 359.95937 * 16 15 14
19 19 S 1.75655 * 125.10479 * 0.02562 * 18 16 15
20 20 C 1.75560 * 91.21521 * 179.97438 * 19 18 16
21 21 C 1.34204 * 110.67475 * 359.97438 * 20 19 18
22 22 C 1.37155 * 125.10033 * 179.71693 * 18 16 15
23 23 O 1.37661 * 124.48302 * 0.83676 * 22 18 16
24 24 C 1.43373 * 114.57069 * 162.91830 * 23 22 18
25 25 C 1.53220 * 109.14290 * 46.29036 * 24 23 22
26 26 O 1.38248 * 124.14213 * 180.12137 * 21 20 19
27 27 C 1.47431 * 108.70068 * 1.09205 * 15 14 13
28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3
29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2
30 30 H 1.09003 * 109.47433 * 299.99456 * 10 9 7
31 31 H 1.08999 * 109.47686 * 59.99159 * 10 9 7
32 32 H 1.09006 * 110.71809 * 324.78767 * 13 11 10
33 33 H 1.09004 * 110.72016 * 88.06320 * 13 11 10
34 34 H 1.08997 * 109.85094 * 262.73401 * 14 13 11
35 35 H 1.09003 * 110.03326 * 141.64576 * 14 13 11
36 36 H 1.08000 * 124.66343 * 180.02562 * 20 19 18
37 37 H 1.08999 * 109.52705 * 286.39211 * 24 23 22
38 38 H 1.09002 * 109.58230 * 166.21889 * 24 23 22
39 39 H 1.09000 * 109.52606 * 177.84201 * 25 24 23
40 40 H 1.09005 * 109.52117 * 57.64956 * 25 24 23
41 41 H 1.08999 * 110.36831 * 217.03642 * 27 15 14
42 42 H 1.08997 * 110.46279 * 94.75653 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 1.2853 2.7465 0.0006
5 1 3.1040 1.6962 1.2126
6 1 3.1040 1.6964 -1.2124
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3256 -2.3881 -0.0016
10 6 2.0580 -3.6568 -0.0016
11 6 1.0637 -4.8197 -0.0022
12 1 0.3592 -4.7291 0.8245
13 6 1.8027 -6.1832 0.0437
14 6 0.7995 -7.1424 -0.6319
15 7 -0.0950 -6.3243 -1.4639
16 6 -1.1242 -6.7870 -2.2007
17 8 -1.8013 -6.0140 -2.8540
18 6 -1.4181 -8.1733 -2.2154
19 16 -0.5329 -9.4030 -1.3268
20 6 -1.5814 -10.6639 -1.9538
21 6 -2.5135 -10.1440 -2.7674
22 6 -2.4402 -8.7553 -2.9210
23 8 -3.3175 -8.0699 -3.7307
24 6 -4.0436 -8.8923 -4.6536
25 6 -4.5858 -10.1197 -3.9139
26 8 -3.4843 -10.8887 -3.4109
27 6 0.3199 -4.9135 -1.3579
28 1 -0.4850 -0.8401 -0.0004
29 1 0.3556 -2.3880 -0.0016
30 1 2.6853 -3.7142 -0.8912
31 1 2.6841 -3.7150 0.8887
32 1 2.7329 -6.1370 -0.5227
33 1 1.9917 -6.4850 1.0739
34 1 0.2211 -7.6683 0.1277
35 1 1.3317 -7.8607 -1.2556
36 1 -1.4894 -11.7135 -1.7166
37 1 -3.3791 -9.2143 -5.4554
38 1 -4.8736 -8.3245 -5.0742
39 1 -5.1714 -10.7301 -4.6013
40 1 -5.2157 -9.7966 -3.0850
41 1 -0.5527 -4.2604 -1.3577
42 1 0.9894 -4.6507 -2.1769
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714374043.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:26:02
Heat of formation + Delta-G solvation = -73.006550 kcal
Electronic energy + Delta-G solvation = -26784.666743 eV
Core-core repulsion = 22856.936843 eV
Total energy + Delta-G solvation = -3927.729900 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 338.113 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.18065 -41.22258 -39.04779 -38.09120 -36.82061 -36.64769 -34.18824 -32.14233
-31.05132 -30.84568 -29.88584 -27.36908 -25.86506 -24.84066 -24.69134 -23.64578
-21.81063 -21.38049 -20.41763 -19.72924 -19.23729 -18.35204 -18.24045 -17.77928
-17.15926 -16.85851 -16.44460 -16.33760 -15.88417 -15.78841 -15.64039 -15.44277
-15.27310 -15.13037 -14.83056 -14.30905 -14.23515 -13.91815 -13.75254 -13.69486
-13.23290 -12.79891 -12.60512 -12.56992 -12.17098 -12.12801 -12.01774 -11.95386
-11.85997 -11.77440 -11.69303 -11.28476 -11.20183 -10.93139 -10.03673 -9.63656
-9.12323 -9.00738 -8.40718 -5.34756 -0.78702 0.23588 0.52571 1.00744
1.57812 1.68811 1.75633 1.84808 1.94283 2.17765 2.43945 2.71828
2.98816 3.29754 3.40445 3.47971 3.50365 3.74966 3.85678 3.86615
3.94891 4.02613 4.10765 4.19547 4.28507 4.37060 4.42967 4.48963
4.52574 4.55358 4.67046 4.73614 4.82023 4.92311 4.95334 5.08605
5.15641 5.31713 5.57104 5.58251 5.94235 6.30364 6.47043 6.92538
7.08025 7.98149 8.09823 9.11069
Molecular weight = 338.11amu
Principal moments of inertia in cm(-1)
A = 0.021820 B = 0.002481 C = 0.002258
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1282.931299 B =11284.016056 C =12396.009022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.978 5.978
2 C -0.110 4.110
3 Si 1.130 2.870
4 H -0.296 1.296
5 H -0.273 1.273
6 H -0.277 1.277
7 C -0.333 4.333
8 H 0.072 0.928
9 N -0.761 5.761
10 C 0.169 3.831
11 C -0.098 4.098
12 H 0.079 0.921
13 C -0.102 4.102
14 C 0.079 3.921
15 N -0.617 5.617
16 C 0.594 3.406
17 O -0.578 6.578
18 C -0.326 4.326
19 S 0.302 5.698
20 C -0.208 4.208
21 C 0.010 3.990
22 C 0.119 3.881
23 O -0.300 6.300
24 C 0.002 3.998
25 C 0.019 3.981
26 O -0.300 6.300
27 C 0.123 3.877
28 H 0.241 0.759
29 H 0.358 0.642
30 H 0.025 0.975
31 H 0.039 0.961
32 H 0.097 0.903
33 H 0.120 0.880
34 H 0.095 0.905
35 H 0.101 0.899
36 H 0.214 0.786
37 H 0.083 0.917
38 H 0.147 0.853
39 H 0.163 0.837
40 H 0.077 0.923
41 H 0.040 0.960
42 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.166 -31.585 -3.767 31.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.626 5.626
2 C -0.300 4.300
3 Si 0.954 3.046
4 H -0.222 1.222
5 H -0.199 1.199
6 H -0.204 1.204
7 C -0.464 4.464
8 H 0.090 0.910
9 N -0.406 5.406
10 C 0.043 3.957
11 C -0.117 4.117
12 H 0.097 0.903
13 C -0.140 4.140
14 C -0.044 4.044
15 N -0.351 5.351
16 C 0.386 3.614
17 O -0.461 6.461
18 C -0.446 4.446
19 S 0.567 5.433
20 C -0.345 4.345
21 C -0.046 4.046
22 C 0.056 3.944
23 O -0.214 6.214
24 C -0.073 4.073
25 C -0.057 4.057
26 O -0.216 6.216
27 C 0.000 4.000
28 H 0.052 0.948
29 H 0.189 0.811
30 H 0.043 0.957
31 H 0.056 0.944
32 H 0.115 0.885
33 H 0.138 0.862
34 H 0.113 0.887
35 H 0.119 0.881
36 H 0.230 0.770
37 H 0.101 0.899
38 H 0.165 0.835
39 H 0.181 0.819
40 H 0.096 0.904
41 H 0.059 0.941
42 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -1.271 -29.604 -3.225 29.806
hybrid contribution -2.109 -1.058 -1.422 2.755
sum -3.380 -30.662 -4.647 31.196
Atomic orbital electron populations
1.70998 1.07376 1.27751 1.56468 1.27321 0.97076 1.05022 1.00630
0.82612 0.73330 0.71321 0.77305 1.22179 1.19850 1.20356 1.20425
0.92549 0.87019 1.46440 0.90992 1.42668 1.04792 1.02340 1.90769
1.20705 0.93177 0.83201 0.98608 1.22449 0.97624 0.96270 0.95407
0.90303 1.22647 0.97443 0.90248 1.03700 1.22513 0.92453 0.94581
0.94865 1.48462 1.30535 1.09354 1.46711 1.15675 0.79528 0.87027
0.79162 1.90863 1.51207 1.58951 1.45048 1.22473 1.06725 0.98526
1.16844 1.83952 1.27544 0.88861 1.42958 1.25948 1.00112 1.07575
1.00817 1.18294 0.96696 0.87806 1.01789 1.19297 0.90924 0.90487
0.93642 1.87147 1.51773 1.34324 1.48152 1.24087 0.98225 0.93895
0.91080 1.23872 0.87482 0.94026 1.00280 1.87048 1.30867 1.32317
1.71381 1.22070 0.98013 0.81571 0.98369 0.94839 0.81085 0.95665
0.94359 0.88492 0.86191 0.88698 0.88101 0.76964 0.89886 0.83529
0.81948 0.90441 0.94133 0.92117
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -64.10 13.70 21.65 0.30 -63.80 16
2 C -0.11 -6.60 5.50 84.86 0.47 -6.14 16
3 Si 1.13 53.27 29.92 68.60 2.05 55.32 16
4 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16
5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16
6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
7 C -0.33 -19.21 9.99 84.03 0.84 -18.37 16
8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16
9 N -0.76 -39.59 5.49 -343.47 -1.89 -41.47 16
10 C 0.17 6.56 5.71 86.38 0.49 7.05 16
11 C -0.10 -3.01 3.07 -9.40 -0.03 -3.04 16
12 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16
13 C -0.10 -1.93 6.42 31.80 0.20 -1.73 16
14 C 0.08 1.51 5.13 86.74 0.44 1.96 16
15 N -0.62 -19.07 3.33 -822.14 -2.73 -21.80 16
16 C 0.59 21.38 7.64 85.10 0.65 22.03 16
17 O -0.58 -26.83 16.11 11.70 0.19 -26.64 16
18 C -0.33 -9.09 6.20 22.87 0.14 -8.95 16
19 S 0.30 4.54 18.30 -56.49 -1.03 3.51 16
20 C -0.21 -3.00 11.17 66.90 0.75 -2.25 16
21 C 0.01 0.20 6.55 21.75 0.14 0.34 16
22 C 0.12 3.28 6.58 22.42 0.15 3.43 16
23 O -0.30 -8.99 9.60 -90.61 -0.87 -9.86 16
24 C 0.00 0.04 7.14 72.06 0.51 0.55 16
25 C 0.02 0.24 7.14 72.06 0.51 0.75 16
26 O -0.30 -5.42 10.77 -113.07 -1.22 -6.64 16
27 C 0.12 4.44 6.23 86.86 0.54 4.98 16
28 H 0.24 15.94 6.77 -92.71 -0.63 15.31 16
29 H 0.36 19.78 6.46 -92.71 -0.60 19.18 16
30 H 0.03 0.98 8.04 -2.39 -0.02 0.96 16
31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
32 H 0.10 1.63 8.04 -2.38 -0.02 1.61 16
33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.10 1.45 6.73 -2.52 -0.02 1.44 16
35 H 0.10 1.46 6.89 -2.39 -0.02 1.44 16
36 H 0.21 1.54 8.06 -2.91 -0.02 1.51 16
37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
38 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16
40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16
41 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16
42 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16
Total: -1.00 -88.48 354.81 1.22 -87.27
By element:
Atomic # 1 Polarization: 22.90 SS G_CDS: 0.60 Total: 23.51 kcal
Atomic # 6 Polarization: -5.21 SS G_CDS: 5.82 Total: 0.61 kcal
Atomic # 7 Polarization: -122.75 SS G_CDS: -4.32 Total: -127.08 kcal
Atomic # 8 Polarization: -41.24 SS G_CDS: -1.90 Total: -43.14 kcal
Atomic # 14 Polarization: 53.27 SS G_CDS: 2.05 Total: 55.32 kcal
Atomic # 16 Polarization: 4.54 SS G_CDS: -1.03 Total: 3.51 kcal
Total: -88.48 1.22 -87.27 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714374043.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.262 kcal
(2) G-P(sol) polarization free energy of solvation -88.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.269 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds