Wall clock time and date at job start Tue Mar 31 2020 21:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.88701 * 305.70223 * 11 10 9 13 13 C 1.55157 * 111.00621 * 181.81740 * 11 10 9 14 14 C 1.54367 * 102.92161 * 206.45419 * 13 11 10 15 15 N 1.47023 * 107.29080 * 22.13997 * 14 13 11 16 16 C 1.34773 * 125.65446 * 181.12678 * 15 14 13 17 17 O 1.21768 * 120.00270 * 179.97438 * 16 15 14 18 18 C 1.41715 * 119.99444 * 359.95937 * 16 15 14 19 19 S 1.75655 * 125.10479 * 0.02562 * 18 16 15 20 20 C 1.75560 * 91.21521 * 179.97438 * 19 18 16 21 21 C 1.34204 * 110.67475 * 359.97438 * 20 19 18 22 22 C 1.37155 * 125.10033 * 179.71693 * 18 16 15 23 23 O 1.37661 * 124.48302 * 0.83676 * 22 18 16 24 24 C 1.43373 * 114.57069 * 162.91830 * 23 22 18 25 25 C 1.53220 * 109.14290 * 46.29036 * 24 23 22 26 26 O 1.38248 * 124.14213 * 180.12137 * 21 20 19 27 27 C 1.47431 * 108.70068 * 1.09205 * 15 14 13 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 31 31 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 32 32 H 1.09006 * 110.71809 * 324.78767 * 13 11 10 33 33 H 1.09004 * 110.72016 * 88.06320 * 13 11 10 34 34 H 1.08997 * 109.85094 * 262.73401 * 14 13 11 35 35 H 1.09003 * 110.03326 * 141.64576 * 14 13 11 36 36 H 1.08000 * 124.66343 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.52705 * 286.39211 * 24 23 22 38 38 H 1.09002 * 109.58230 * 166.21889 * 24 23 22 39 39 H 1.09000 * 109.52606 * 177.84201 * 25 24 23 40 40 H 1.09005 * 109.52117 * 57.64956 * 25 24 23 41 41 H 1.08999 * 110.36831 * 217.03642 * 27 15 14 42 42 H 1.08997 * 110.46279 * 94.75653 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3592 -4.7291 0.8245 13 6 1.8027 -6.1832 0.0437 14 6 0.7995 -7.1424 -0.6319 15 7 -0.0950 -6.3243 -1.4639 16 6 -1.1242 -6.7870 -2.2007 17 8 -1.8013 -6.0140 -2.8540 18 6 -1.4181 -8.1733 -2.2154 19 16 -0.5329 -9.4030 -1.3268 20 6 -1.5814 -10.6639 -1.9538 21 6 -2.5135 -10.1440 -2.7674 22 6 -2.4402 -8.7553 -2.9210 23 8 -3.3175 -8.0699 -3.7307 24 6 -4.0436 -8.8923 -4.6536 25 6 -4.5858 -10.1197 -3.9139 26 8 -3.4843 -10.8887 -3.4109 27 6 0.3199 -4.9135 -1.3579 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6853 -3.7142 -0.8912 31 1 2.6841 -3.7150 0.8887 32 1 2.7329 -6.1370 -0.5227 33 1 1.9917 -6.4850 1.0739 34 1 0.2211 -7.6683 0.1277 35 1 1.3317 -7.8607 -1.2556 36 1 -1.4894 -11.7135 -1.7166 37 1 -3.3791 -9.2143 -5.4554 38 1 -4.8736 -8.3245 -5.0742 39 1 -5.1714 -10.7301 -4.6013 40 1 -5.2157 -9.7966 -3.0850 41 1 -0.5527 -4.2604 -1.3577 42 1 0.9894 -4.6507 -2.1769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714374043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:02 Heat of formation + Delta-G solvation = -73.006550 kcal Electronic energy + Delta-G solvation = -26784.666743 eV Core-core repulsion = 22856.936843 eV Total energy + Delta-G solvation = -3927.729900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18065 -41.22258 -39.04779 -38.09120 -36.82061 -36.64769 -34.18824 -32.14233 -31.05132 -30.84568 -29.88584 -27.36908 -25.86506 -24.84066 -24.69134 -23.64578 -21.81063 -21.38049 -20.41763 -19.72924 -19.23729 -18.35204 -18.24045 -17.77928 -17.15926 -16.85851 -16.44460 -16.33760 -15.88417 -15.78841 -15.64039 -15.44277 -15.27310 -15.13037 -14.83056 -14.30905 -14.23515 -13.91815 -13.75254 -13.69486 -13.23290 -12.79891 -12.60512 -12.56992 -12.17098 -12.12801 -12.01774 -11.95386 -11.85997 -11.77440 -11.69303 -11.28476 -11.20183 -10.93139 -10.03673 -9.63656 -9.12323 -9.00738 -8.40718 -5.34756 -0.78702 0.23588 0.52571 1.00744 1.57812 1.68811 1.75633 1.84808 1.94283 2.17765 2.43945 2.71828 2.98816 3.29754 3.40445 3.47971 3.50365 3.74966 3.85678 3.86615 3.94891 4.02613 4.10765 4.19547 4.28507 4.37060 4.42967 4.48963 4.52574 4.55358 4.67046 4.73614 4.82023 4.92311 4.95334 5.08605 5.15641 5.31713 5.57104 5.58251 5.94235 6.30364 6.47043 6.92538 7.08025 7.98149 8.09823 9.11069 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.021820 B = 0.002481 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.931299 B =11284.016056 C =12396.009022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.110 4.110 3 Si 1.130 2.870 4 H -0.296 1.296 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.333 4.333 8 H 0.072 0.928 9 N -0.761 5.761 10 C 0.169 3.831 11 C -0.098 4.098 12 H 0.079 0.921 13 C -0.102 4.102 14 C 0.079 3.921 15 N -0.617 5.617 16 C 0.594 3.406 17 O -0.578 6.578 18 C -0.326 4.326 19 S 0.302 5.698 20 C -0.208 4.208 21 C 0.010 3.990 22 C 0.119 3.881 23 O -0.300 6.300 24 C 0.002 3.998 25 C 0.019 3.981 26 O -0.300 6.300 27 C 0.123 3.877 28 H 0.241 0.759 29 H 0.358 0.642 30 H 0.025 0.975 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.214 0.786 37 H 0.083 0.917 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -31.585 -3.767 31.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.954 3.046 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.464 4.464 8 H 0.090 0.910 9 N -0.406 5.406 10 C 0.043 3.957 11 C -0.117 4.117 12 H 0.097 0.903 13 C -0.140 4.140 14 C -0.044 4.044 15 N -0.351 5.351 16 C 0.386 3.614 17 O -0.461 6.461 18 C -0.446 4.446 19 S 0.567 5.433 20 C -0.345 4.345 21 C -0.046 4.046 22 C 0.056 3.944 23 O -0.214 6.214 24 C -0.073 4.073 25 C -0.057 4.057 26 O -0.216 6.216 27 C 0.000 4.000 28 H 0.052 0.948 29 H 0.189 0.811 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.230 0.770 37 H 0.101 0.899 38 H 0.165 0.835 39 H 0.181 0.819 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.271 -29.604 -3.225 29.806 hybrid contribution -2.109 -1.058 -1.422 2.755 sum -3.380 -30.662 -4.647 31.196 Atomic orbital electron populations 1.70998 1.07376 1.27751 1.56468 1.27321 0.97076 1.05022 1.00630 0.82612 0.73330 0.71321 0.77305 1.22179 1.19850 1.20356 1.20425 0.92549 0.87019 1.46440 0.90992 1.42668 1.04792 1.02340 1.90769 1.20705 0.93177 0.83201 0.98608 1.22449 0.97624 0.96270 0.95407 0.90303 1.22647 0.97443 0.90248 1.03700 1.22513 0.92453 0.94581 0.94865 1.48462 1.30535 1.09354 1.46711 1.15675 0.79528 0.87027 0.79162 1.90863 1.51207 1.58951 1.45048 1.22473 1.06725 0.98526 1.16844 1.83952 1.27544 0.88861 1.42958 1.25948 1.00112 1.07575 1.00817 1.18294 0.96696 0.87806 1.01789 1.19297 0.90924 0.90487 0.93642 1.87147 1.51773 1.34324 1.48152 1.24087 0.98225 0.93895 0.91080 1.23872 0.87482 0.94026 1.00280 1.87048 1.30867 1.32317 1.71381 1.22070 0.98013 0.81571 0.98369 0.94839 0.81085 0.95665 0.94359 0.88492 0.86191 0.88698 0.88101 0.76964 0.89886 0.83529 0.81948 0.90441 0.94133 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.10 13.70 21.65 0.30 -63.80 16 2 C -0.11 -6.60 5.50 84.86 0.47 -6.14 16 3 Si 1.13 53.27 29.92 68.60 2.05 55.32 16 4 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.33 -19.21 9.99 84.03 0.84 -18.37 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.76 -39.59 5.49 -343.47 -1.89 -41.47 16 10 C 0.17 6.56 5.71 86.38 0.49 7.05 16 11 C -0.10 -3.01 3.07 -9.40 -0.03 -3.04 16 12 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.10 -1.93 6.42 31.80 0.20 -1.73 16 14 C 0.08 1.51 5.13 86.74 0.44 1.96 16 15 N -0.62 -19.07 3.33 -822.14 -2.73 -21.80 16 16 C 0.59 21.38 7.64 85.10 0.65 22.03 16 17 O -0.58 -26.83 16.11 11.70 0.19 -26.64 16 18 C -0.33 -9.09 6.20 22.87 0.14 -8.95 16 19 S 0.30 4.54 18.30 -56.49 -1.03 3.51 16 20 C -0.21 -3.00 11.17 66.90 0.75 -2.25 16 21 C 0.01 0.20 6.55 21.75 0.14 0.34 16 22 C 0.12 3.28 6.58 22.42 0.15 3.43 16 23 O -0.30 -8.99 9.60 -90.61 -0.87 -9.86 16 24 C 0.00 0.04 7.14 72.06 0.51 0.55 16 25 C 0.02 0.24 7.14 72.06 0.51 0.75 16 26 O -0.30 -5.42 10.77 -113.07 -1.22 -6.64 16 27 C 0.12 4.44 6.23 86.86 0.54 4.98 16 28 H 0.24 15.94 6.77 -92.71 -0.63 15.31 16 29 H 0.36 19.78 6.46 -92.71 -0.60 19.18 16 30 H 0.03 0.98 8.04 -2.39 -0.02 0.96 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.63 8.04 -2.38 -0.02 1.61 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.45 6.73 -2.52 -0.02 1.44 16 35 H 0.10 1.46 6.89 -2.39 -0.02 1.44 16 36 H 0.21 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 42 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 Total: -1.00 -88.48 354.81 1.22 -87.27 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.60 Total: 23.51 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.82 Total: 0.61 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -4.32 Total: -127.08 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.90 Total: -43.14 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 2.05 Total: 55.32 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.03 Total: 3.51 kcal Total: -88.48 1.22 -87.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714374043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.262 kcal (2) G-P(sol) polarization free energy of solvation -88.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds