Wall clock time and date at job start Tue Mar 31 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48495 * 109.47307 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.47256 * 30.00203 * 3 2 1 6 6 H 1.48498 * 109.46942 * 150.00059 * 3 2 1 7 7 C 1.38814 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00333 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99974 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.91729 * 57.44791 * 11 10 9 13 13 C 1.55159 * 111.00466 * 181.35064 * 11 10 9 14 14 C 1.54328 * 103.02254 * 153.37955 * 13 11 10 15 15 N 1.47019 * 107.26840 * 338.14235 * 14 13 11 16 16 C 1.34777 * 125.65276 * 178.84811 * 15 14 13 17 17 O 1.21781 * 120.00402 * 179.69262 * 16 15 14 18 18 C 1.41709 * 119.99954 * 359.69399 * 16 15 14 19 19 S 1.75666 * 125.10085 * 359.97334 * 18 16 15 20 20 C 1.75556 * 91.21054 * 179.97438 * 19 18 16 21 21 C 1.34204 * 110.68116 * 359.96685 * 20 19 18 22 22 C 1.37159 * 125.10602 * 180.02562 * 18 16 15 23 23 O 1.37645 * 124.47869 * 0.17946 * 22 18 16 24 24 C 1.43381 * 114.50516 * 163.28571 * 23 22 18 25 25 C 1.53228 * 109.12883 * 46.53134 * 24 23 22 26 26 O 1.38244 * 124.14409 * 180.21543 * 21 20 19 27 27 C 1.47429 * 108.69998 * 358.58514 * 15 14 13 28 28 H 0.97006 * 119.99892 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99807 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46848 * 59.99834 * 10 9 7 31 31 H 1.08998 * 109.46800 * 300.00093 * 10 9 7 32 32 H 1.09002 * 110.72128 * 271.94053 * 13 11 10 33 33 H 1.09001 * 110.71828 * 35.03622 * 13 11 10 34 34 H 1.09003 * 109.99648 * 218.66474 * 14 13 11 35 35 H 1.09003 * 109.78091 * 97.49581 * 14 13 11 36 36 H 1.08004 * 124.65726 * 180.23352 * 20 19 18 37 37 H 1.08998 * 109.53053 * 166.42410 * 24 23 22 38 38 H 1.08996 * 109.52496 * 286.63713 * 24 23 22 39 39 H 1.09001 * 109.52372 * 57.63557 * 25 24 23 40 40 H 1.08998 * 109.51979 * 177.83088 * 25 24 23 41 41 H 1.09004 * 110.36495 * 143.19656 * 27 15 14 42 42 H 1.08998 * 110.36329 * 265.40844 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8988 -1.5816 0.8582 13 6 6.4278 -3.5134 -0.0341 14 6 7.7524 -3.0912 -0.7040 15 7 7.4847 -1.8614 -1.4639 16 6 8.3929 -1.1633 -2.1740 17 8 8.0559 -0.1572 -2.7717 18 6 9.7401 -1.6000 -2.2251 19 16 10.3709 -3.0263 -1.4166 20 6 11.9805 -2.7164 -2.0454 21 6 11.9882 -1.6088 -2.8032 22 6 10.7473 -0.9721 -2.9124 23 8 10.5875 0.1793 -3.6497 24 6 11.8104 0.8585 -3.9644 25 6 12.8338 -0.1610 -4.4752 26 8 13.1105 -1.1114 -3.4389 27 6 6.0567 -1.5219 -1.3257 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.8484 -3.0426 -0.8897 31 1 3.8491 -3.0422 0.8902 32 1 6.6044 -3.8837 0.9757 33 1 5.9154 -4.2649 -0.6348 34 1 8.0960 -3.8760 -1.3779 35 1 8.5066 -2.8985 0.0591 36 1 12.8447 -3.3348 -1.8526 37 1 11.6241 1.6056 -4.7359 38 1 12.1971 1.3459 -3.0695 39 1 12.4289 -0.6795 -5.3443 40 1 13.7535 0.3540 -4.7528 41 1 5.9278 -0.4411 -1.2661 42 1 5.4881 -1.9254 -2.1635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714374044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:07 Heat of formation + Delta-G solvation = -41.886671 kcal Electronic energy + Delta-G solvation = -26866.651861 eV Core-core repulsion = 22940.271420 eV Total energy + Delta-G solvation = -3926.380441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40565 -40.08462 -37.87093 -37.26927 -35.88521 -34.86008 -32.40880 -30.89532 -30.22881 -30.10876 -28.88885 -26.29740 -24.63138 -24.10462 -23.26193 -21.76994 -20.86505 -20.14193 -19.63519 -18.73865 -17.62722 -17.53772 -17.24501 -16.63876 -16.27828 -15.79957 -15.21841 -15.14253 -15.00247 -14.65901 -14.55450 -14.21864 -13.88250 -13.78610 -13.55294 -13.20327 -12.97070 -12.68943 -12.59926 -12.51330 -12.05155 -11.79910 -11.54439 -11.38399 -11.30640 -11.14483 -10.93482 -10.70905 -10.62962 -10.47910 -10.10210 -9.96852 -9.56721 -8.98656 -8.88178 -8.69011 -8.24938 -7.22398 -5.74919 -3.10856 0.08067 1.01621 1.25958 1.83095 2.82772 2.87438 3.10951 3.15240 3.42293 3.46232 3.50463 3.69489 4.09321 4.40553 4.41498 4.48192 4.52988 4.62589 4.78639 4.83285 4.91005 4.94738 5.06266 5.10821 5.15538 5.28656 5.44649 5.55803 5.57841 5.75398 5.76889 5.81920 5.89724 6.13646 6.16441 6.23559 6.34771 6.59143 6.68819 6.70985 7.43773 8.00244 8.12283 8.43883 9.22586 9.95223 10.14073 11.43309 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002793 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.062885 B =10021.979542 C =11290.893661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.170 3.830 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.116 4.116 14 C 0.085 3.915 15 N -0.618 5.618 16 C 0.601 3.399 17 O -0.516 6.516 18 C -0.275 4.275 19 S 0.229 5.771 20 C -0.231 4.231 21 C 0.032 3.968 22 C 0.127 3.873 23 O -0.259 6.259 24 C 0.012 3.988 25 C 0.018 3.982 26 O -0.293 6.293 27 C 0.116 3.884 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.178 0.822 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.107 -7.574 -4.989 32.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.155 4.155 14 C -0.040 4.040 15 N -0.353 5.353 16 C 0.391 3.609 17 O -0.394 6.394 18 C -0.395 4.395 19 S 0.493 5.507 20 C -0.367 4.367 21 C -0.024 4.024 22 C 0.065 3.935 23 O -0.172 6.172 24 C -0.064 4.064 25 C -0.058 4.058 26 O -0.209 6.209 27 C -0.005 4.005 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.196 0.804 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 30.159 -8.133 -4.486 31.556 hybrid contribution 1.457 2.437 -1.036 3.023 sum 31.616 -5.695 -5.522 32.596 Atomic orbital electron populations 1.69704 1.05106 1.25849 1.57508 1.24664 0.95225 0.97216 1.01908 0.86584 0.79185 0.84981 0.78019 1.20877 1.21698 1.20332 1.19035 0.80543 0.94733 1.43183 0.89147 1.42727 1.04133 1.02181 1.91221 1.20562 0.86546 0.89556 0.99122 1.22662 0.97162 0.95952 0.97245 0.89595 1.22590 0.93367 0.98071 1.01473 1.22175 0.99201 0.87021 0.95625 1.48417 1.10459 1.26489 1.49892 1.15148 0.82805 0.83393 0.79585 1.90919 1.79755 1.24501 1.44227 1.22501 0.98312 1.06061 1.12584 1.84485 0.95643 1.22558 1.48002 1.25411 1.04973 1.00229 1.06100 1.18242 0.86591 0.96021 1.01510 1.18873 0.91736 0.88800 0.94046 1.87213 1.29855 1.33532 1.66615 1.23746 0.84713 0.95058 1.02915 1.23629 1.01653 0.90701 0.89852 1.87042 1.26190 1.58258 1.49405 1.22349 0.78671 1.01602 0.97912 0.93051 0.80589 0.95054 0.94856 0.89469 0.89736 0.90698 0.90790 0.80415 0.85534 0.90229 0.90369 0.85746 0.90144 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.65 13.97 55.49 0.78 -28.88 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.74 27.74 -169.99 -4.71 18.03 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.75 6.52 56.52 0.37 -6.39 16 7 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.88 5.26 -59.91 -0.32 -18.20 16 10 C 0.17 3.09 5.71 -4.04 -0.02 3.06 16 11 C -0.11 -1.59 3.11 -88.47 -0.27 -1.87 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.12 -1.18 6.42 -24.89 -0.16 -1.34 16 14 C 0.08 0.86 5.13 -3.06 -0.02 0.85 16 15 N -0.62 -8.88 3.33 -173.88 -0.58 -9.46 16 16 C 0.60 9.84 7.64 -14.93 -0.11 9.72 16 17 O -0.52 -10.54 16.11 -11.90 -0.19 -10.73 16 18 C -0.27 -3.66 6.20 -38.65 -0.24 -3.90 16 19 S 0.23 1.97 18.31 -107.50 -1.97 0.00 16 20 C -0.23 -1.98 11.17 29.31 0.33 -1.65 16 21 C 0.03 0.35 6.55 -40.38 -0.26 0.08 16 22 C 0.13 1.66 6.57 -39.35 -0.26 1.40 16 23 O -0.26 -3.53 9.60 -49.11 -0.47 -4.00 16 24 C 0.01 0.10 7.14 37.28 0.27 0.36 16 25 C 0.02 0.12 7.14 37.28 0.27 0.38 16 26 O -0.29 -2.82 10.76 -35.41 -0.38 -3.21 16 27 C 0.12 1.86 6.08 -2.53 -0.02 1.85 16 28 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 29 H 0.36 8.49 5.39 -40.82 -0.22 8.27 16 30 H 0.03 0.58 8.10 -51.93 -0.42 0.15 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 34 H 0.08 0.64 6.92 -51.93 -0.36 0.28 16 35 H 0.07 0.65 6.71 -51.60 -0.35 0.30 16 36 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 42 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -37.23 353.26 -8.85 -46.08 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.57 Total: 3.13 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.76 Total: 1.91 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.12 Total: -56.53 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.04 Total: -17.94 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.03 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.97 Total: 0.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.23 -8.85 -46.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714374044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.194 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds