Wall clock time and date at job start Tue Mar 31 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48495 * 109.47307 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.47256 * 30.00203 * 3 2 1 6 6 H 1.48498 * 109.46942 * 150.00059 * 3 2 1 7 7 C 1.38814 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00333 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99974 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.91729 * 57.44791 * 11 10 9 13 13 C 1.55159 * 111.00466 * 181.35064 * 11 10 9 14 14 C 1.54328 * 103.02254 * 153.37955 * 13 11 10 15 15 N 1.47019 * 107.26840 * 338.14235 * 14 13 11 16 16 C 1.34777 * 125.65276 * 178.84811 * 15 14 13 17 17 O 1.21781 * 120.00402 * 179.69262 * 16 15 14 18 18 C 1.41709 * 119.99954 * 359.69399 * 16 15 14 19 19 S 1.75666 * 125.10085 * 359.97334 * 18 16 15 20 20 C 1.75556 * 91.21054 * 179.97438 * 19 18 16 21 21 C 1.34204 * 110.68116 * 359.96685 * 20 19 18 22 22 C 1.37159 * 125.10602 * 180.02562 * 18 16 15 23 23 O 1.37645 * 124.47869 * 0.17946 * 22 18 16 24 24 C 1.43381 * 114.50516 * 163.28571 * 23 22 18 25 25 C 1.53228 * 109.12883 * 46.53134 * 24 23 22 26 26 O 1.38244 * 124.14409 * 180.21543 * 21 20 19 27 27 C 1.47429 * 108.69998 * 358.58514 * 15 14 13 28 28 H 0.97006 * 119.99892 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99807 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46848 * 59.99834 * 10 9 7 31 31 H 1.08998 * 109.46800 * 300.00093 * 10 9 7 32 32 H 1.09002 * 110.72128 * 271.94053 * 13 11 10 33 33 H 1.09001 * 110.71828 * 35.03622 * 13 11 10 34 34 H 1.09003 * 109.99648 * 218.66474 * 14 13 11 35 35 H 1.09003 * 109.78091 * 97.49581 * 14 13 11 36 36 H 1.08004 * 124.65726 * 180.23352 * 20 19 18 37 37 H 1.08998 * 109.53053 * 166.42410 * 24 23 22 38 38 H 1.08996 * 109.52496 * 286.63713 * 24 23 22 39 39 H 1.09001 * 109.52372 * 57.63557 * 25 24 23 40 40 H 1.08998 * 109.51979 * 177.83088 * 25 24 23 41 41 H 1.09004 * 110.36495 * 143.19656 * 27 15 14 42 42 H 1.08998 * 110.36329 * 265.40844 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8988 -1.5816 0.8582 13 6 6.4278 -3.5134 -0.0341 14 6 7.7524 -3.0912 -0.7040 15 7 7.4847 -1.8614 -1.4639 16 6 8.3929 -1.1633 -2.1740 17 8 8.0559 -0.1572 -2.7717 18 6 9.7401 -1.6000 -2.2251 19 16 10.3709 -3.0263 -1.4166 20 6 11.9805 -2.7164 -2.0454 21 6 11.9882 -1.6088 -2.8032 22 6 10.7473 -0.9721 -2.9124 23 8 10.5875 0.1793 -3.6497 24 6 11.8104 0.8585 -3.9644 25 6 12.8338 -0.1610 -4.4752 26 8 13.1105 -1.1114 -3.4389 27 6 6.0567 -1.5219 -1.3257 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.8484 -3.0426 -0.8897 31 1 3.8491 -3.0422 0.8902 32 1 6.6044 -3.8837 0.9757 33 1 5.9154 -4.2649 -0.6348 34 1 8.0960 -3.8760 -1.3779 35 1 8.5066 -2.8985 0.0591 36 1 12.8447 -3.3348 -1.8526 37 1 11.6241 1.6056 -4.7359 38 1 12.1971 1.3459 -3.0695 39 1 12.4289 -0.6795 -5.3443 40 1 13.7535 0.3540 -4.7528 41 1 5.9278 -0.4411 -1.2661 42 1 5.4881 -1.9254 -2.1635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714374044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:07 Heat of formation + Delta-G solvation = -69.349266 kcal Electronic energy + Delta-G solvation = -26867.842728 eV Core-core repulsion = 22940.271420 eV Total energy + Delta-G solvation = -3927.571308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16372 -41.18041 -39.00550 -38.07882 -36.72364 -36.56316 -34.11547 -32.58810 -31.02342 -30.83460 -30.09231 -27.62777 -25.88786 -24.75947 -24.49126 -23.33107 -21.83490 -21.36137 -20.40051 -19.84992 -19.38255 -18.32555 -18.20734 -17.50789 -17.33422 -16.70875 -16.58704 -16.13528 -15.98003 -15.85437 -15.59896 -15.42055 -15.14731 -14.93627 -14.69110 -14.25507 -14.21347 -13.95805 -13.77227 -13.66177 -13.57578 -13.18213 -12.84282 -12.43024 -12.25766 -12.12905 -12.11277 -11.90616 -11.87835 -11.80296 -11.67077 -11.59462 -11.21714 -10.99862 -9.99387 -9.60427 -9.29891 -8.98283 -8.04603 -5.36594 -0.76290 0.26354 0.54749 1.02962 1.34419 1.38185 1.42961 1.80386 1.97820 2.19448 2.45212 2.45763 3.00972 3.27194 3.31626 3.50065 3.55001 3.74413 3.87169 3.89701 3.96771 4.03141 4.17085 4.22231 4.34656 4.38451 4.46995 4.50662 4.56270 4.58425 4.73422 4.81694 4.84455 5.01618 5.02775 5.14008 5.22949 5.39636 5.58908 5.75808 5.96038 6.20154 6.34328 6.96342 7.06749 7.84183 8.00096 9.16927 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002793 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.062885 B =10021.979542 C =11290.893661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.945 3.055 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.228 4.228 8 H 0.065 0.935 9 N -0.763 5.763 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.088 0.912 13 C -0.104 4.104 14 C 0.078 3.922 15 N -0.617 5.617 16 C 0.595 3.405 17 O -0.578 6.578 18 C -0.325 4.325 19 S 0.303 5.697 20 C -0.210 4.210 21 C 0.009 3.991 22 C 0.118 3.882 23 O -0.299 6.299 24 C 0.002 3.998 25 C 0.019 3.981 26 O -0.301 6.301 27 C 0.115 3.885 28 H 0.257 0.743 29 H 0.362 0.638 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.212 0.788 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.162 0.838 41 H 0.047 0.953 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.967 -9.569 -4.000 36.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.181 1.181 7 C -0.359 4.359 8 H 0.083 0.917 9 N -0.408 5.408 10 C 0.040 3.960 11 C -0.120 4.120 12 H 0.106 0.894 13 C -0.142 4.142 14 C -0.045 4.045 15 N -0.351 5.351 16 C 0.387 3.613 17 O -0.460 6.460 18 C -0.444 4.444 19 S 0.568 5.432 20 C -0.347 4.347 21 C -0.046 4.046 22 C 0.055 3.945 23 O -0.213 6.213 24 C -0.073 4.073 25 C -0.056 4.056 26 O -0.217 6.217 27 C -0.008 4.008 28 H 0.066 0.934 29 H 0.195 0.805 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.229 0.771 37 H 0.165 0.835 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.179 0.821 41 H 0.066 0.934 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 34.076 -10.198 -3.465 35.738 hybrid contribution 0.316 2.929 -1.376 3.252 sum 34.392 -7.269 -4.841 35.484 Atomic orbital electron populations 1.69859 1.06861 1.26522 1.60009 1.25397 0.96013 1.00774 1.03041 0.85561 0.78723 0.80635 0.77793 1.21324 1.21828 1.18051 1.19075 0.82659 0.93577 1.40623 0.91716 1.42829 1.02648 1.04389 1.90981 1.20773 0.88592 0.87273 0.99378 1.22497 0.94880 0.98578 0.96044 0.89396 1.22637 0.92162 0.95630 1.03740 1.22513 1.00006 0.85755 0.96229 1.48460 1.09323 1.27545 1.49723 1.15633 0.84138 0.82755 0.78814 1.90863 1.81049 1.27206 1.46891 1.22492 0.97091 1.09356 1.15472 1.83974 0.94508 1.18905 1.45790 1.25944 1.06083 0.99147 1.03517 1.18301 0.86139 0.97005 1.03159 1.19282 0.92810 0.88736 0.93687 1.87147 1.32966 1.34295 1.66859 1.24078 0.83713 0.95685 1.03784 1.23845 1.02838 0.90014 0.88953 1.87016 1.25784 1.58881 1.50044 1.22191 0.80170 0.99788 0.98611 0.93359 0.80509 0.94970 0.93737 0.86123 0.88641 0.88364 0.88600 0.77128 0.83505 0.90022 0.90412 0.82083 0.93391 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.05 13.97 21.65 0.30 -63.74 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.94 47.87 27.74 68.60 1.90 49.78 16 4 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 5 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 7 C -0.23 -13.15 10.47 84.03 0.88 -12.26 16 8 H 0.06 4.00 8.06 -2.91 -0.02 3.98 16 9 N -0.76 -35.88 5.26 -343.47 -1.81 -37.69 16 10 C 0.17 5.83 5.71 86.38 0.49 6.32 16 11 C -0.10 -2.71 3.11 -9.40 -0.03 -2.74 16 12 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.10 -1.70 6.42 31.79 0.20 -1.49 16 14 C 0.08 1.32 5.13 86.73 0.44 1.77 16 15 N -0.62 -17.35 3.33 -822.21 -2.73 -20.08 16 16 C 0.59 19.91 7.64 85.10 0.65 20.56 16 17 O -0.58 -25.15 16.11 11.67 0.19 -24.97 16 18 C -0.32 -8.46 6.20 22.87 0.14 -8.31 16 19 S 0.30 4.15 18.31 -56.49 -1.03 3.11 16 20 C -0.21 -2.84 11.17 66.90 0.75 -2.09 16 21 C 0.01 0.18 6.55 21.75 0.14 0.33 16 22 C 0.12 3.06 6.57 22.42 0.15 3.21 16 23 O -0.30 -8.48 9.60 -90.42 -0.87 -9.35 16 24 C 0.00 0.04 7.14 72.06 0.51 0.55 16 25 C 0.02 0.22 7.14 72.06 0.51 0.74 16 26 O -0.30 -5.20 10.76 -113.01 -1.22 -6.41 16 27 C 0.12 3.72 6.08 86.85 0.53 4.25 16 28 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 29 H 0.36 16.88 5.39 -92.71 -0.50 16.38 16 30 H 0.03 1.15 8.10 -2.39 -0.02 1.13 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.42 8.04 -2.39 -0.02 1.40 16 34 H 0.10 1.26 6.92 -2.39 -0.02 1.24 16 35 H 0.10 1.25 6.71 -2.60 -0.02 1.23 16 36 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.16 0.61 8.14 -2.39 -0.02 0.60 16 41 H 0.05 1.84 8.04 -2.38 -0.02 1.82 16 42 H 0.06 2.21 8.01 -2.39 -0.02 2.19 16 Total: -1.00 -86.63 353.26 1.08 -85.56 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.50 Total: 16.16 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.85 Total: 7.63 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -4.24 Total: -121.51 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.90 Total: -40.73 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.78 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.03 Total: 3.11 kcal Total: -86.63 1.08 -85.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714374044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.208 kcal (2) G-P(sol) polarization free energy of solvation -86.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds