Wall clock time and date at job start Tue Mar 31 2020 20:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47212 * 300.00595 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99900 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21622 * 120.00315 * 0.02562 * 16 15 14 18 18 C 1.47313 * 119.99735 * 179.97438 * 16 15 14 19 19 C 1.35209 * 122.42660 * 179.97438 * 18 16 15 20 20 S 1.71014 * 109.10424 * 180.02562 * 19 18 16 21 21 C 1.76003 * 90.57533 * 359.97438 * 20 19 18 22 22 C 1.47942 * 125.31757 * 180.02562 * 21 20 19 23 23 N 1.34104 * 125.66557 * 179.67352 * 22 21 20 24 24 C 1.30625 * 109.77561 * 179.81677 * 23 22 21 25 25 N 1.34577 * 108.33205 * 0.43658 * 24 23 22 26 26 H 0.96997 * 126.72868 * 179.75163 * 25 24 23 27 27 N 1.31632 * 125.67224 * 359.97175 * 22 21 20 28 28 N 1.29836 * 109.36263 * 359.73651 * 21 20 19 29 29 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 32 32 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 33 33 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 34 34 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 35 35 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 36 36 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 37 37 H 1.07994 * 125.44527 * 359.97215 * 19 18 16 38 38 H 1.08000 * 125.83421 * 180.20263 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5242 -8.7498 -0.0654 18 6 0.3787 -9.6427 -0.2667 19 6 0.7760 -10.9348 -0.2946 20 16 -0.5994 -11.9403 -0.4428 21 6 -1.6512 -10.5292 -0.4579 22 6 -3.1261 -10.5630 -0.5692 23 7 -3.9345 -9.4931 -0.5752 24 6 -5.1771 -9.8787 -0.6909 25 7 -5.1992 -11.2228 -0.7533 26 1 -5.9838 -11.7868 -0.8375 27 7 -3.8633 -11.6486 -0.6732 28 7 -0.9311 -9.4543 -0.3499 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6854 -3.7149 0.8878 32 1 2.6841 -3.7141 -0.8921 33 1 0.7352 -4.7907 1.9961 34 1 2.5209 -6.1643 -0.8445 35 1 2.3866 -6.2426 0.9287 36 1 -0.0699 -7.0769 -0.1871 37 1 1.7985 -11.2771 -0.2340 38 1 -6.0398 -9.2299 -0.7263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715606753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:32 Heat of formation + Delta-G solvation = 33.645545 kcal Electronic energy + Delta-G solvation = -25028.031908 eV Core-core repulsion = 21033.679198 eV Total energy + Delta-G solvation = -3994.352710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.14641 -41.61648 -39.91355 -38.83505 -36.07822 -35.35564 -34.12191 -33.18731 -32.82866 -31.36812 -30.68058 -27.86615 -26.73689 -25.14406 -23.93254 -23.71560 -22.75788 -21.64894 -20.62217 -19.81606 -19.30667 -19.15687 -18.24652 -17.29755 -17.23585 -16.99501 -16.82045 -16.43057 -16.22284 -16.06099 -15.86689 -15.47458 -15.08111 -14.95039 -14.72738 -14.40007 -14.15113 -13.83386 -13.33473 -13.24839 -13.07117 -12.94256 -12.77577 -12.11451 -11.96325 -11.80341 -11.73500 -11.49874 -11.26004 -11.16556 -11.11757 -10.99532 -10.88850 -10.71958 -10.25796 -9.78969 -9.00130 -7.93484 -5.23358 -0.94093 -0.08966 0.25933 0.35520 0.90456 1.48320 1.49576 1.49760 1.59751 1.87006 2.06490 2.28198 2.53971 2.58138 3.22171 3.37650 3.47616 3.59323 3.67846 3.96677 4.00834 4.05148 4.17520 4.19909 4.40282 4.54416 4.61775 4.70867 4.92494 4.94068 5.03733 5.20006 5.27736 5.49530 6.06471 6.18720 6.27557 6.46051 6.80924 6.91176 7.01737 7.34371 8.09763 8.33145 9.30122 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.002135 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.490764 B =13110.907802 C =14822.218318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.124 3.876 11 C 0.107 3.893 12 H 0.097 0.903 13 O -0.563 6.563 14 C 0.101 3.899 15 N -0.698 5.698 16 C 0.591 3.409 17 O -0.566 6.566 18 C -0.014 4.014 19 C -0.207 4.207 20 S 0.323 5.677 21 C 0.085 3.915 22 C 0.278 3.722 23 N -0.556 5.556 24 C 0.287 3.713 25 N -0.457 5.457 26 H 0.466 0.534 27 N -0.305 5.305 28 N -0.419 5.419 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.384 0.616 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.214 0.786 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 -32.239 -1.419 33.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.384 5.384 10 C -0.003 4.003 11 C 0.047 3.953 12 H 0.115 0.885 13 O -0.370 6.370 14 C -0.023 4.023 15 N -0.348 5.348 16 C 0.375 3.625 17 O -0.445 6.445 18 C -0.152 4.152 19 C -0.350 4.350 20 S 0.579 5.421 21 C -0.193 4.193 22 C -0.005 4.005 23 N -0.285 5.285 24 C -0.011 4.011 25 N -0.179 5.179 26 H 0.317 0.683 27 N -0.139 5.139 28 N -0.137 5.137 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.233 0.767 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.231 0.769 38 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -9.763 -33.151 -1.831 34.607 hybrid contribution -0.046 1.850 0.349 1.883 sum -9.809 -31.301 -1.482 32.836 Atomic orbital electron populations 1.69857 1.06715 1.26018 1.59355 1.25633 0.96429 1.01293 1.03668 0.85031 0.78211 0.79583 0.76653 1.18915 1.22014 1.22005 1.19698 0.91561 0.85257 1.41303 0.90409 1.42437 1.05807 1.00782 1.89347 1.21385 0.94063 0.85526 0.99363 1.22108 0.92315 0.91417 0.89489 0.88530 1.86585 1.37617 1.96400 1.16378 1.21995 0.91890 0.84755 1.03706 1.45740 1.12063 1.04808 1.72196 1.17293 0.86548 0.82386 0.76231 1.90789 1.16240 1.84955 1.52556 1.19986 0.89234 0.94288 1.11645 1.27157 1.08456 0.96329 1.03096 1.83672 0.91461 1.06264 1.60691 1.24001 0.93841 0.92677 1.08798 1.20587 0.91101 0.87456 1.01381 1.70651 1.01764 1.31573 1.24551 1.27190 0.97278 0.84229 0.92399 1.48076 1.06724 1.08000 1.55070 0.68273 1.78116 0.89335 1.20451 1.26007 1.66814 1.03698 1.31073 1.12086 0.94002 0.79130 0.94792 0.94606 0.76677 0.89773 0.90052 0.74714 0.76895 0.70571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 3 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.74 -38.55 5.49 -343.46 -1.89 -40.44 16 10 C 0.12 4.88 5.92 86.38 0.51 5.39 16 11 C 0.11 3.48 3.09 30.60 0.09 3.57 16 12 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 13 O -0.56 -19.32 13.03 -148.98 -1.94 -21.26 16 14 C 0.10 2.81 5.31 86.38 0.46 3.27 16 15 N -0.70 -19.70 5.50 -466.47 -2.56 -22.26 16 16 C 0.59 17.22 7.79 86.63 0.68 17.89 16 17 O -0.57 -18.69 16.65 -4.10 -0.07 -18.76 16 18 C -0.01 -0.36 6.64 40.72 0.27 -0.09 16 19 C -0.21 -3.77 10.57 67.12 0.71 -3.06 16 20 S 0.32 4.63 23.17 -56.49 -1.31 3.32 16 21 C 0.08 1.90 7.50 87.56 0.66 2.55 16 22 C 0.28 5.98 8.04 137.25 1.10 7.08 16 23 N -0.56 -11.77 11.22 -193.35 -2.17 -13.94 16 24 C 0.29 2.61 13.11 180.37 2.36 4.97 16 25 N -0.46 -3.41 7.44 -60.52 -0.45 -3.86 16 26 H 0.47 -0.72 8.96 -213.11 -1.91 -2.63 16 27 N -0.30 -5.02 12.84 -52.57 -0.67 -5.69 16 28 N -0.42 -11.07 10.07 -179.50 -1.81 -12.87 16 29 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.38 21.34 7.54 -92.71 -0.70 20.64 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.38 10.90 9.05 -74.06 -0.67 10.23 16 34 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.42 11.99 7.95 -92.71 -0.74 11.25 16 37 H 0.21 3.05 7.99 -2.91 -0.02 3.03 16 38 H 0.28 -0.68 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -84.99 359.21 -5.24 -90.23 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -2.83 Total: 33.00 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 8.15 Total: 24.27 kcal Atomic # 7 Polarization: -150.50 SS G_CDS: -9.27 Total: -159.77 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.01 Total: -40.02 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.31 Total: 3.32 kcal Total: -84.99 -5.24 -90.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715606753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.879 kcal (2) G-P(sol) polarization free energy of solvation -84.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds