Wall clock time and date at job start Tue Mar 31 2020 21:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99524 * 2 1 4 4 H 1.48506 * 109.46723 * 239.99650 * 3 2 1 5 5 H 1.48495 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47021 * 119.99892 * 3 2 1 7 7 C 1.38805 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00296 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46653 * 35.00067 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00197 * 10 9 7 13 13 N 1.46503 * 109.47354 * 304.99803 * 12 10 9 14 14 C 1.34774 * 119.99841 * 180.02562 * 13 12 10 15 15 O 1.21772 * 120.00301 * 0.02562 * 14 13 12 16 16 C 1.41717 * 119.99745 * 180.02562 * 14 13 12 17 17 S 1.75658 * 125.10232 * 0.02562 * 16 14 13 18 18 C 1.75554 * 91.21418 * 179.97438 * 17 16 14 19 19 C 1.34201 * 110.68024 * 359.97438 * 18 17 16 20 20 C 1.37149 * 125.10211 * 179.72191 * 16 14 13 21 21 O 1.37647 * 124.48321 * 0.27157 * 20 16 14 22 22 C 1.43380 * 114.50277 * 163.26057 * 21 20 16 23 23 C 1.53223 * 109.12921 * 46.53311 * 22 21 20 24 24 O 1.38241 * 124.14801 * 180.21475 * 19 18 17 25 25 C 1.53003 * 109.46936 * 275.00238 * 10 9 7 26 26 C 1.53001 * 117.51964 * 356.28241 * 25 10 9 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 10 28 28 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99943 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 31 31 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 32 32 H 0.97000 * 119.99697 * 0.02562 * 13 12 10 33 33 H 1.08001 * 124.66235 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.52552 * 166.43344 * 22 21 20 35 35 H 1.09004 * 109.52538 * 286.56598 * 22 21 20 36 36 H 1.09003 * 109.51934 * 57.63097 * 23 22 21 37 37 H 1.08999 * 109.52137 * 177.75695 * 23 22 21 38 38 H 1.09002 * 115.54973 * 210.58024 * 25 10 9 39 39 H 1.09001 * 117.49733 * 214.97413 * 26 25 10 40 40 H 1.08995 * 117.49577 * 359.97438 * 26 25 10 41 41 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 42 42 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0027 11 1 2.9689 -3.5499 0.5921 12 6 1.1811 -4.7515 0.6133 13 7 0.7344 -4.3337 1.9445 14 6 -0.0546 -5.1454 2.6761 15 8 -0.3958 -6.2261 2.2307 16 6 -0.4871 -4.7410 3.9636 17 16 -0.0776 -3.2165 4.7342 18 6 -1.0118 -3.6424 6.1581 19 6 -1.5714 -4.8535 6.0131 20 6 -1.2930 -5.4787 4.7927 21 8 -1.7919 -6.7249 4.4880 22 6 -2.2833 -7.4608 5.6162 23 6 -3.1679 -6.5437 6.4672 24 8 -2.3692 -5.4589 6.9660 25 6 2.4222 -4.0368 -1.4340 26 6 1.9102 -3.1314 -2.5560 27 6 3.3938 -3.1218 -2.1822 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3880 0.0016 30 1 0.3135 -4.9200 -0.0248 31 1 1.7560 -5.6739 0.6958 32 1 1.0066 -3.4730 2.2994 33 1 -1.1213 -3.0158 7.0310 34 1 -2.8687 -8.3121 5.2689 35 1 -1.4434 -7.8156 6.2136 36 1 -3.9831 -6.1552 5.8569 37 1 -3.5771 -7.1078 7.3054 38 1 2.4802 -5.1061 -1.6371 39 1 1.6313 -3.6051 -3.4973 40 1 1.3136 -2.2649 -2.2708 41 1 3.7735 -2.2490 -1.6510 42 1 4.0910 -3.5894 -2.8776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731405930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:53 Heat of formation + Delta-G solvation = -23.846461 kcal Electronic energy + Delta-G solvation = -27019.150502 eV Core-core repulsion = 23093.552343 eV Total energy + Delta-G solvation = -3925.598158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13803 -39.33579 -37.61796 -37.07643 -35.69291 -34.40886 -33.23615 -31.09153 -30.04116 -29.80769 -27.99541 -25.06179 -23.90547 -23.52619 -22.48012 -21.51417 -20.70401 -19.50029 -19.35436 -18.72282 -17.48536 -17.22003 -16.84179 -16.46635 -15.55743 -15.29313 -15.25802 -14.94314 -14.68356 -14.55272 -14.46656 -14.34802 -13.71363 -13.57944 -13.23925 -12.99935 -12.86859 -12.79664 -12.03251 -11.41356 -11.27778 -11.22836 -11.13709 -11.08578 -10.91517 -10.86154 -10.82893 -10.49434 -10.13922 -9.77007 -9.65903 -9.42836 -9.16030 -8.96473 -8.77867 -8.46925 -8.04071 -7.06028 -5.82461 -3.13108 0.38668 1.32108 1.55881 2.10194 3.08713 3.29597 3.39545 3.45185 3.46151 3.49760 3.58727 3.98637 4.38536 4.50104 4.59978 4.64289 4.66109 5.03412 5.18187 5.21602 5.31193 5.36293 5.42360 5.49025 5.60669 5.75338 5.84550 5.88150 5.99475 6.07133 6.12567 6.38020 6.46485 6.48155 6.67609 6.76312 6.90510 6.93174 6.98897 7.33293 7.66198 7.91548 8.34324 8.56045 9.46648 10.00317 10.36907 11.38693 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003365 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.005687 B = 8319.353793 C = 9838.523178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.057 0.943 12 C 0.121 3.879 13 N -0.711 5.711 14 C 0.586 3.414 15 O -0.531 6.531 16 C -0.274 4.274 17 S 0.243 5.757 18 C -0.219 4.219 19 C 0.029 3.971 20 C 0.120 3.880 21 O -0.260 6.260 22 C 0.013 3.987 23 C 0.018 3.982 24 O -0.293 6.293 25 C -0.177 4.177 26 C -0.162 4.162 27 C -0.176 4.176 28 H 0.256 0.744 29 H 0.387 0.613 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.180 0.820 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -11.625 12.589 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.363 5.363 14 C 0.373 3.627 15 O -0.411 6.411 16 C -0.394 4.394 17 S 0.507 5.493 18 C -0.357 4.357 19 C -0.027 4.027 20 C 0.058 3.942 21 O -0.173 6.173 22 C -0.064 4.064 23 C -0.059 4.059 24 O -0.209 6.209 25 C -0.199 4.199 26 C -0.199 4.199 27 C -0.213 4.213 28 H 0.066 0.934 29 H 0.221 0.779 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.242 0.758 33 H 0.198 0.802 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.005 -11.013 11.850 16.301 hybrid contribution -0.729 0.024 0.561 0.920 sum -2.734 -10.988 12.410 16.800 Atomic orbital electron populations 1.69652 1.04984 1.25846 1.56968 1.24698 0.95389 0.97471 1.02729 0.86363 0.78613 0.83889 0.77868 1.21299 1.21802 1.21281 1.19117 0.90881 0.83792 1.43444 0.91138 1.42487 1.05873 0.99471 1.88117 1.20008 0.94091 0.86076 0.91776 0.92485 1.21601 0.98863 0.97465 0.82374 1.45865 1.50870 1.21340 1.18252 1.15524 0.79205 0.84779 0.83175 1.90842 1.56879 1.21815 1.71545 1.22710 1.11657 1.02502 1.02543 1.84655 1.47330 1.13108 1.04169 1.25058 1.07075 0.98151 1.05374 1.18194 1.00149 0.94023 0.90378 1.18830 0.95421 0.87299 0.92647 1.87195 1.74942 1.24091 1.31065 1.23695 0.98986 0.95017 0.88675 1.23653 0.93305 0.88220 1.00684 1.87104 1.54921 1.47556 1.31339 1.23069 1.05604 0.95345 0.95845 1.22948 0.96989 1.03390 0.96551 1.22808 0.92825 1.02349 1.03358 0.93389 0.77893 0.91477 0.91642 0.75769 0.80248 0.85843 0.90434 0.90314 0.85992 0.89583 0.91336 0.85961 0.88339 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.97 13.06 55.49 0.72 -25.25 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -5.96 8.10 -15.06 -0.12 -6.09 16 8 H 0.07 1.72 6.89 -52.49 -0.36 1.36 16 9 N -0.72 -15.99 3.20 -53.43 -0.17 -16.16 16 10 C 0.19 3.55 2.83 -67.93 -0.19 3.36 16 11 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 12 C 0.12 2.13 5.19 -4.04 -0.02 2.11 16 13 N -0.71 -12.66 5.37 -63.19 -0.34 -13.00 16 14 C 0.59 10.95 7.59 -14.93 -0.11 10.84 16 15 O -0.53 -11.34 15.86 -11.89 -0.19 -11.52 16 16 C -0.27 -4.49 6.25 -38.65 -0.24 -4.73 16 17 S 0.24 3.26 22.17 -107.50 -2.38 0.87 16 18 C -0.22 -2.60 11.17 29.31 0.33 -2.28 16 19 C 0.03 0.39 6.54 -40.37 -0.26 0.12 16 20 C 0.12 1.85 6.58 -39.35 -0.26 1.59 16 21 O -0.26 -3.95 9.60 -49.12 -0.47 -4.42 16 22 C 0.01 0.12 7.13 37.27 0.27 0.38 16 23 C 0.02 0.15 7.15 37.27 0.27 0.41 16 24 O -0.29 -3.42 10.78 -35.39 -0.38 -3.81 16 25 C -0.18 -3.10 5.73 -90.61 -0.52 -3.62 16 26 C -0.16 -3.05 9.69 -26.73 -0.26 -3.31 16 27 C -0.18 -3.11 9.88 -26.73 -0.26 -3.38 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 9.52 7.80 -40.82 -0.32 9.20 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.41 7.21 7.07 -40.82 -0.29 6.93 16 33 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.12 2.77 6.42 -51.93 -0.33 2.43 16 41 H 0.10 1.92 6.55 -51.93 -0.34 1.58 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -31.02 362.64 -9.68 -40.71 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -5.42 Total: 15.86 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.49 Total: -4.84 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.21 Total: -54.41 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.04 Total: -19.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.38 Total: 0.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.02 -9.68 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731405930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.859 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds