Wall clock time and date at job start Tue Mar 31 2020 21:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99524 * 2 1 4 4 H 1.48506 * 109.46723 * 239.99650 * 3 2 1 5 5 H 1.48495 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47021 * 119.99892 * 3 2 1 7 7 C 1.38805 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00296 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46653 * 35.00067 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00197 * 10 9 7 13 13 N 1.46503 * 109.47354 * 304.99803 * 12 10 9 14 14 C 1.34774 * 119.99841 * 180.02562 * 13 12 10 15 15 O 1.21772 * 120.00301 * 0.02562 * 14 13 12 16 16 C 1.41717 * 119.99745 * 180.02562 * 14 13 12 17 17 S 1.75658 * 125.10232 * 0.02562 * 16 14 13 18 18 C 1.75554 * 91.21418 * 179.97438 * 17 16 14 19 19 C 1.34201 * 110.68024 * 359.97438 * 18 17 16 20 20 C 1.37149 * 125.10211 * 179.72191 * 16 14 13 21 21 O 1.37647 * 124.48321 * 0.27157 * 20 16 14 22 22 C 1.43380 * 114.50277 * 163.26057 * 21 20 16 23 23 C 1.53223 * 109.12921 * 46.53311 * 22 21 20 24 24 O 1.38241 * 124.14801 * 180.21475 * 19 18 17 25 25 C 1.53003 * 109.46936 * 275.00238 * 10 9 7 26 26 C 1.53001 * 117.51964 * 356.28241 * 25 10 9 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 10 28 28 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99943 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 31 31 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 32 32 H 0.97000 * 119.99697 * 0.02562 * 13 12 10 33 33 H 1.08001 * 124.66235 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.52552 * 166.43344 * 22 21 20 35 35 H 1.09004 * 109.52538 * 286.56598 * 22 21 20 36 36 H 1.09003 * 109.51934 * 57.63097 * 23 22 21 37 37 H 1.08999 * 109.52137 * 177.75695 * 23 22 21 38 38 H 1.09002 * 115.54973 * 210.58024 * 25 10 9 39 39 H 1.09001 * 117.49733 * 214.97413 * 26 25 10 40 40 H 1.08995 * 117.49577 * 359.97438 * 26 25 10 41 41 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 42 42 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0027 11 1 2.9689 -3.5499 0.5921 12 6 1.1811 -4.7515 0.6133 13 7 0.7344 -4.3337 1.9445 14 6 -0.0546 -5.1454 2.6761 15 8 -0.3958 -6.2261 2.2307 16 6 -0.4871 -4.7410 3.9636 17 16 -0.0776 -3.2165 4.7342 18 6 -1.0118 -3.6424 6.1581 19 6 -1.5714 -4.8535 6.0131 20 6 -1.2930 -5.4787 4.7927 21 8 -1.7919 -6.7249 4.4880 22 6 -2.2833 -7.4608 5.6162 23 6 -3.1679 -6.5437 6.4672 24 8 -2.3692 -5.4589 6.9660 25 6 2.4222 -4.0368 -1.4340 26 6 1.9102 -3.1314 -2.5560 27 6 3.3938 -3.1218 -2.1822 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3880 0.0016 30 1 0.3135 -4.9200 -0.0248 31 1 1.7560 -5.6739 0.6958 32 1 1.0066 -3.4730 2.2994 33 1 -1.1213 -3.0158 7.0310 34 1 -2.8687 -8.3121 5.2689 35 1 -1.4434 -7.8156 6.2136 36 1 -3.9831 -6.1552 5.8569 37 1 -3.5771 -7.1078 7.3054 38 1 2.4802 -5.1061 -1.6371 39 1 1.6313 -3.6051 -3.4973 40 1 1.3136 -2.2649 -2.2708 41 1 3.7735 -2.2490 -1.6510 42 1 4.0910 -3.5894 -2.8776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731405930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:52 Heat of formation + Delta-G solvation = -44.279520 kcal Electronic energy + Delta-G solvation = -27020.036545 eV Core-core repulsion = 23093.552343 eV Total energy + Delta-G solvation = -3926.484202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.11594 -40.72764 -39.13557 -38.05876 -36.70455 -35.89513 -35.04711 -32.74801 -31.18827 -30.77449 -29.52732 -26.33509 -25.32179 -24.73102 -23.86981 -22.96597 -22.01725 -20.86392 -20.34072 -20.03842 -19.14617 -18.37972 -18.06074 -17.47447 -16.86469 -16.75289 -16.45287 -16.28260 -15.90958 -15.81993 -15.74248 -15.41805 -15.22045 -15.04776 -14.56492 -14.43473 -14.10248 -13.81763 -13.56425 -12.93725 -12.82295 -12.63061 -12.58846 -12.32923 -12.12617 -12.10044 -12.01438 -11.93453 -11.79166 -11.58399 -11.19986 -10.97760 -10.81691 -10.61158 -10.15242 -9.63959 -9.07374 -8.96393 -7.84059 -5.12615 -0.72716 0.26802 0.53316 1.05322 1.52993 1.54192 1.59151 2.05917 2.19971 2.23974 2.47793 2.61697 3.08682 3.15595 3.50235 3.55368 3.87625 3.93152 3.95027 4.00268 4.08340 4.22863 4.30164 4.35485 4.40353 4.49857 4.51243 4.58886 4.60014 4.68637 4.86568 4.93509 4.97645 5.20137 5.24104 5.41263 5.51085 5.60049 5.68964 5.73167 5.97859 6.34889 6.48344 7.13552 7.43486 8.12897 8.39452 9.37909 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003365 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.005687 B = 8319.353793 C = 9838.523178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.062 4.062 3 Si 0.956 3.044 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.278 1.278 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.721 5.721 10 C 0.193 3.807 11 H 0.061 0.939 12 C 0.129 3.871 13 N -0.710 5.710 14 C 0.586 3.414 15 O -0.568 6.568 16 C -0.319 4.319 17 S 0.249 5.751 18 C -0.194 4.194 19 C 0.017 3.983 20 C 0.124 3.876 21 O -0.292 6.292 22 C 0.003 3.997 23 C 0.015 3.985 24 O -0.298 6.298 25 C -0.169 4.169 26 C -0.174 4.174 27 C -0.166 4.166 28 H 0.247 0.753 29 H 0.373 0.627 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.406 0.594 33 H 0.213 0.787 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -12.592 13.992 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.204 1.204 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.361 5.361 10 C 0.084 3.916 11 H 0.079 0.921 12 C 0.005 3.995 13 N -0.361 5.361 14 C 0.375 3.625 15 O -0.451 6.451 16 C -0.439 4.439 17 S 0.513 5.487 18 C -0.332 4.332 19 C -0.040 4.040 20 C 0.061 3.939 21 O -0.206 6.206 22 C -0.072 4.072 23 C -0.060 4.060 24 O -0.214 6.214 25 C -0.191 4.191 26 C -0.211 4.211 27 C -0.203 4.203 28 H 0.056 0.944 29 H 0.206 0.794 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.242 0.758 33 H 0.230 0.770 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.182 0.818 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.293 -12.007 13.259 17.934 hybrid contribution -0.972 0.190 0.193 1.009 sum -2.265 -11.817 13.452 18.048 Atomic orbital electron populations 1.69799 1.06285 1.25622 1.59610 1.25287 0.95942 1.00112 1.04177 0.85477 0.77285 0.80594 0.77960 1.21212 1.23022 1.20386 1.19371 0.91093 0.84483 1.40367 0.90608 1.42536 1.05258 1.00286 1.88017 1.20127 0.93865 0.84774 0.92851 0.92093 1.21528 0.98245 0.97651 0.82121 1.45846 1.50849 1.21227 1.18220 1.15810 0.78569 0.84223 0.83882 1.90798 1.58352 1.23243 1.72671 1.22612 1.14215 1.04656 1.02444 1.84555 1.47690 1.11709 1.04759 1.25444 1.04708 0.97783 1.05228 1.18219 1.01138 0.94510 0.90093 1.19147 0.94306 0.87413 0.93051 1.87142 1.74912 1.24317 1.34197 1.24110 0.99827 0.95501 0.87771 1.23959 0.92441 0.87425 1.02169 1.87100 1.54936 1.48421 1.30962 1.23041 1.05008 0.96719 0.94298 1.22797 0.97601 1.02677 0.98030 1.22814 0.92479 1.01674 1.03360 0.94380 0.79423 0.92865 0.89983 0.75800 0.76998 0.83025 0.89709 0.90411 0.81821 0.86799 0.89303 0.90091 0.90369 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.45 13.06 21.65 0.28 -55.17 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 3 Si 0.96 43.88 29.55 68.60 2.03 45.91 16 4 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.22 -10.99 8.10 84.03 0.68 -10.31 16 8 H 0.08 3.65 6.89 -2.91 -0.02 3.63 16 9 N -0.72 -32.53 3.20 -322.94 -1.03 -33.56 16 10 C 0.19 7.06 2.83 44.99 0.13 7.19 16 11 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 12 C 0.13 4.52 5.19 86.38 0.45 4.97 16 13 N -0.71 -25.78 5.37 -472.02 -2.54 -28.32 16 14 C 0.59 22.52 7.59 85.10 0.65 23.16 16 15 O -0.57 -24.98 15.86 11.70 0.19 -24.80 16 16 C -0.32 -10.66 6.25 22.87 0.14 -10.51 16 17 S 0.25 6.58 22.17 -56.49 -1.25 5.32 16 18 C -0.19 -4.25 11.17 66.90 0.75 -3.51 16 19 C 0.02 0.42 6.54 21.76 0.14 0.56 16 20 C 0.12 3.81 6.58 22.42 0.15 3.96 16 21 O -0.29 -8.86 9.60 -90.45 -0.87 -9.73 16 22 C 0.00 0.05 7.13 72.06 0.51 0.56 16 23 C 0.02 0.22 7.15 72.06 0.52 0.73 16 24 O -0.30 -6.27 10.78 -112.98 -1.22 -7.49 16 25 C -0.17 -5.65 5.73 -10.79 -0.06 -5.71 16 26 C -0.17 -6.41 9.69 30.59 0.30 -6.12 16 27 C -0.17 -5.55 9.88 30.60 0.30 -5.24 16 28 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.37 18.95 7.80 -92.70 -0.72 18.23 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.41 14.72 7.07 -92.71 -0.66 14.06 16 33 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 3.23 8.08 -2.39 -0.02 3.21 16 39 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 3.73 6.42 -2.39 -0.02 3.72 16 41 H 0.08 2.94 6.55 -2.39 -0.02 2.93 16 42 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -69.05 362.64 0.41 -68.64 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: -0.30 Total: 42.31 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.11 Total: -3.12 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -3.29 Total: -117.05 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.90 Total: -42.02 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.25 Total: 5.32 kcal Total: -69.05 0.41 -68.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731405930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.363 kcal (2) G-P(sol) polarization free energy of solvation -69.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds