Wall clock time and date at job start Tue Mar 31 2020 20:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39902 * 109.47017 * 2 1 4 4 F 1.39901 * 109.47231 * 240.00338 * 2 1 3 5 5 C 1.50691 * 109.47047 * 119.99984 * 2 1 3 6 6 O 1.21281 * 119.99892 * 25.00427 * 5 2 1 7 7 N 1.34770 * 120.00284 * 204.99724 * 5 2 1 8 8 C 1.46501 * 120.00510 * 180.02562 * 7 5 2 9 9 H 1.09004 * 110.64226 * 31.86325 * 8 7 5 10 10 C 1.54330 * 111.00362 * 268.78611 * 8 7 5 11 11 N 1.47027 * 107.26545 * 219.60087 * 10 8 7 12 12 C 1.34781 * 125.64495 * 178.84862 * 11 10 8 13 13 O 1.21274 * 120.00344 * 359.71591 * 12 11 10 14 14 C 1.50701 * 119.99423 * 179.71387 * 12 11 10 15 15 S 1.81001 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99894 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46807 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46906 * 300.00462 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47422 * 108.70246 * 358.58172 * 11 10 8 25 25 C 1.54908 * 104.83059 * 24.35933 * 24 11 10 26 26 H 1.09005 * 111.00741 * 81.06491 * 25 24 11 27 27 O 1.42904 * 111.00314 * 204.87722 * 25 24 11 28 28 H 1.08997 * 109.47419 * 300.00009 * 1 2 3 29 29 H 1.09009 * 109.46857 * 59.99789 * 1 2 3 30 30 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99832 * 0.02562 * 7 5 2 32 32 H 1.08993 * 109.99573 * 100.12201 * 10 8 7 33 33 H 1.09008 * 109.77701 * 338.95394 * 10 8 7 34 34 H 1.09001 * 109.47454 * 60.00304 * 14 12 11 35 35 H 1.09003 * 109.47322 * 299.99933 * 14 12 11 36 36 H 0.97001 * 119.99662 * 179.97438 * 19 18 16 37 37 H 1.09000 * 110.36501 * 143.19335 * 24 11 10 38 38 H 1.08998 * 110.36752 * 265.51802 * 24 11 10 39 39 H 0.96706 * 113.99699 * 298.54571 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.3370 -1.5393 1.7783 7 7 3.2542 -0.4246 1.7219 8 6 3.7428 -1.1156 2.9177 9 1 3.3454 -2.1295 2.9651 10 6 3.3794 -0.3320 4.1967 11 7 4.5330 -0.4187 5.1041 12 6 4.6205 0.1557 6.3203 13 8 3.6969 0.8155 6.7472 14 6 5.8662 -0.0221 7.1495 15 16 5.6784 0.8620 8.7177 16 6 7.2319 0.4952 9.4637 17 1 7.9519 -0.1157 8.9396 18 6 7.5305 0.9916 10.7252 19 7 6.6527 1.7358 11.3643 20 14 9.1772 0.6022 11.5164 21 1 9.2489 1.2461 12.8526 22 1 9.3188 -0.8683 11.6666 23 1 10.2733 1.1199 10.6586 24 6 5.5754 -1.2431 4.4662 25 6 5.2940 -1.1323 2.9469 26 1 5.7024 -0.2070 2.5404 27 8 5.8081 -2.2670 2.2467 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8103 0.2386 1.2838 32 1 2.5024 -0.7749 4.6686 33 1 3.1818 0.7105 3.9468 34 1 6.7236 0.3769 6.6075 35 1 6.0229 -1.0826 7.3472 36 1 6.8613 2.0823 12.2460 37 1 6.5651 -0.8498 4.6984 38 1 5.4920 -2.2797 4.7929 39 1 6.7665 -2.3731 2.3196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735723929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:04 Heat of formation + Delta-G solvation = -206.800915 kcal Electronic energy + Delta-G solvation = -26831.645621 eV Core-core repulsion = 22343.884433 eV Total energy + Delta-G solvation = -4487.761189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.70752 -47.70068 -40.80369 -39.62386 -38.07471 -35.92245 -34.82391 -32.47790 -32.12430 -30.82507 -29.13191 -28.26850 -25.64301 -25.33207 -23.57100 -21.68923 -21.27160 -19.65226 -19.17749 -18.28312 -18.09379 -17.82018 -17.29410 -16.82700 -16.18111 -15.89318 -15.52598 -15.37812 -15.09345 -14.84845 -14.54412 -14.33241 -14.18695 -14.01098 -13.88355 -13.82917 -13.29653 -13.18090 -13.05237 -12.93844 -12.77512 -12.61356 -12.49848 -12.35255 -11.93871 -11.27574 -11.09933 -11.07681 -10.88632 -10.81226 -10.49566 -9.94334 -9.87115 -9.50730 -9.10730 -8.73164 -8.30840 -6.56785 -6.26288 -3.98001 1.59194 1.96545 2.68033 2.91139 3.16350 3.19639 3.19943 3.25450 3.40232 3.41623 3.59923 3.82978 3.97743 4.04728 4.15578 4.20919 4.47243 4.77310 4.86206 4.90311 4.91473 5.04280 5.08718 5.17706 5.32923 5.40386 5.42979 5.48651 5.59898 5.75249 5.79853 6.02300 6.15385 6.61103 7.06687 7.26831 7.42592 7.54253 8.29805 8.39001 9.18693 10.81053 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002189 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.372834 B =12788.507062 C =13399.014114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.283 3.717 3 F -0.187 7.187 4 F -0.181 7.181 5 C 0.490 3.510 6 O -0.494 6.494 7 N -0.699 5.699 8 C 0.139 3.861 9 H 0.121 0.879 10 C 0.101 3.899 11 N -0.623 5.623 12 C 0.550 3.450 13 O -0.507 6.507 14 C -0.147 4.147 15 S -0.058 6.058 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.920 3.080 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.073 3.927 25 C 0.086 3.914 26 H 0.084 0.916 27 O -0.550 6.550 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.411 0.589 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.270 0.730 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -5.648 -25.639 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.244 3.756 3 F -0.168 7.168 4 F -0.162 7.162 5 C 0.271 3.729 6 O -0.367 6.367 7 N -0.351 5.351 8 C 0.034 3.966 9 H 0.139 0.861 10 C -0.023 4.023 11 N -0.363 5.363 12 C 0.339 3.661 13 O -0.380 6.380 14 C -0.298 4.298 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.208 1.208 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.052 4.052 25 C 0.025 3.975 26 H 0.102 0.898 27 O -0.356 6.356 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.247 0.753 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.740 -5.189 -24.515 26.226 hybrid contribution 3.203 -0.515 -0.208 3.251 sum -4.537 -5.704 -24.723 25.775 Atomic orbital electron populations 1.22666 0.88480 1.06978 1.06028 1.21340 0.96089 0.75576 0.82617 1.93082 1.90448 1.36663 1.96649 1.93105 1.90508 1.80742 1.51797 1.20777 0.82571 0.83864 0.85685 1.90820 1.55434 1.31793 1.58651 1.45816 1.17173 1.42965 1.29138 1.22054 0.92712 0.98231 0.83585 0.86076 1.22223 0.90528 1.01077 0.88489 1.48301 1.17137 1.53365 1.17506 1.20113 0.89182 0.77883 0.78945 1.90731 1.39688 1.38347 1.69262 1.23517 0.97014 1.06000 1.03227 1.85451 1.24339 1.65466 1.07934 1.22800 1.02113 1.38344 1.05252 0.90944 1.25001 0.98004 0.94513 0.96038 1.70005 1.34485 1.31887 1.13811 0.86212 0.82179 0.78718 0.78324 1.20775 1.19901 1.19932 1.22976 0.93433 0.97179 0.91562 1.23167 0.93062 0.90018 0.91225 0.89838 1.86549 1.28038 1.47065 1.73945 0.88526 0.88920 0.87919 0.75317 0.89954 0.90522 0.89207 0.89100 0.92052 0.89166 0.89814 0.76367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 8.92 37.16 0.33 -0.77 16 2 C 0.28 2.24 2.47 -27.89 -0.07 2.17 16 3 F -0.19 -1.48 16.51 2.25 0.04 -1.45 16 4 F -0.18 -1.59 17.05 2.25 0.04 -1.55 16 5 C 0.49 4.73 7.23 -10.99 -0.08 4.65 16 6 O -0.49 -6.11 15.74 5.56 0.09 -6.02 16 7 N -0.70 -5.81 5.05 -52.03 -0.26 -6.07 16 8 C 0.14 1.30 3.04 -66.09 -0.20 1.10 16 9 H 0.12 1.30 7.55 -51.93 -0.39 0.90 16 10 C 0.10 1.20 6.63 -3.06 -0.02 1.18 16 11 N -0.62 -8.36 3.33 -170.52 -0.57 -8.93 16 12 C 0.55 10.17 7.87 -10.98 -0.09 10.08 16 13 O -0.51 -11.50 16.19 5.56 0.09 -11.41 16 14 C -0.15 -2.87 5.16 36.01 0.19 -2.68 16 15 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 16 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 17 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 20 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.07 0.67 6.42 -2.53 -0.02 0.65 16 25 C 0.09 0.64 4.06 -24.58 -0.10 0.54 16 26 H 0.08 0.50 8.01 -51.93 -0.42 0.08 16 27 O -0.55 -3.82 13.47 -35.23 -0.47 -4.29 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.10 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.41 2.58 8.12 -40.82 -0.33 2.25 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 0.93 8.03 -51.92 -0.42 0.51 16 34 H 0.09 1.58 7.85 -51.92 -0.41 1.17 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.39 1.04 9.11 45.56 0.42 1.46 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -36.44 359.64 -5.99 -42.43 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.00 Total: 0.50 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.14 Total: 4.24 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.10 Total: -40.07 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.30 Total: -21.72 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.44 -5.99 -42.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735723929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.370 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds