Wall clock time and date at job start Tue Mar 31 2020 20:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39902 * 109.47017 * 2 1 4 4 F 1.39901 * 109.47231 * 240.00338 * 2 1 3 5 5 C 1.50691 * 109.47047 * 119.99984 * 2 1 3 6 6 O 1.21281 * 119.99892 * 25.00427 * 5 2 1 7 7 N 1.34770 * 120.00284 * 204.99724 * 5 2 1 8 8 C 1.46501 * 120.00510 * 180.02562 * 7 5 2 9 9 H 1.09004 * 110.64226 * 31.86325 * 8 7 5 10 10 C 1.54330 * 111.00362 * 268.78611 * 8 7 5 11 11 N 1.47027 * 107.26545 * 219.60087 * 10 8 7 12 12 C 1.34781 * 125.64495 * 178.84862 * 11 10 8 13 13 O 1.21274 * 120.00344 * 359.71591 * 12 11 10 14 14 C 1.50701 * 119.99423 * 179.71387 * 12 11 10 15 15 S 1.81001 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99894 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46807 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46906 * 300.00462 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47422 * 108.70246 * 358.58172 * 11 10 8 25 25 C 1.54908 * 104.83059 * 24.35933 * 24 11 10 26 26 H 1.09005 * 111.00741 * 81.06491 * 25 24 11 27 27 O 1.42904 * 111.00314 * 204.87722 * 25 24 11 28 28 H 1.08997 * 109.47419 * 300.00009 * 1 2 3 29 29 H 1.09009 * 109.46857 * 59.99789 * 1 2 3 30 30 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99832 * 0.02562 * 7 5 2 32 32 H 1.08993 * 109.99573 * 100.12201 * 10 8 7 33 33 H 1.09008 * 109.77701 * 338.95394 * 10 8 7 34 34 H 1.09001 * 109.47454 * 60.00304 * 14 12 11 35 35 H 1.09003 * 109.47322 * 299.99933 * 14 12 11 36 36 H 0.97001 * 119.99662 * 179.97438 * 19 18 16 37 37 H 1.09000 * 110.36501 * 143.19335 * 24 11 10 38 38 H 1.08998 * 110.36752 * 265.51802 * 24 11 10 39 39 H 0.96706 * 113.99699 * 298.54571 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.3370 -1.5393 1.7783 7 7 3.2542 -0.4246 1.7219 8 6 3.7428 -1.1156 2.9177 9 1 3.3454 -2.1295 2.9651 10 6 3.3794 -0.3320 4.1967 11 7 4.5330 -0.4187 5.1041 12 6 4.6205 0.1557 6.3203 13 8 3.6969 0.8155 6.7472 14 6 5.8662 -0.0221 7.1495 15 16 5.6784 0.8620 8.7177 16 6 7.2319 0.4952 9.4637 17 1 7.9519 -0.1157 8.9396 18 6 7.5305 0.9916 10.7252 19 7 6.6527 1.7358 11.3643 20 14 9.1772 0.6022 11.5164 21 1 9.2489 1.2461 12.8526 22 1 9.3188 -0.8683 11.6666 23 1 10.2733 1.1199 10.6586 24 6 5.5754 -1.2431 4.4662 25 6 5.2940 -1.1323 2.9469 26 1 5.7024 -0.2070 2.5404 27 8 5.8081 -2.2670 2.2467 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8103 0.2386 1.2838 32 1 2.5024 -0.7749 4.6686 33 1 3.1818 0.7105 3.9468 34 1 6.7236 0.3769 6.6075 35 1 6.0229 -1.0826 7.3472 36 1 6.8613 2.0823 12.2460 37 1 6.5651 -0.8498 4.6984 38 1 5.4920 -2.2797 4.7929 39 1 6.7665 -2.3731 2.3196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735723929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:03 Heat of formation + Delta-G solvation = -236.616889 kcal Electronic energy + Delta-G solvation = -26832.938539 eV Core-core repulsion = 22343.884433 eV Total energy + Delta-G solvation = -4489.054106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.35726 -48.35031 -41.70244 -40.67228 -39.13856 -36.67938 -35.75680 -34.58429 -32.75520 -32.00669 -30.15320 -29.29996 -27.67231 -26.19063 -24.45335 -22.43680 -22.03461 -20.90494 -19.98223 -19.58292 -18.93205 -18.77293 -18.34703 -17.70855 -17.11335 -16.88305 -16.84996 -16.75005 -16.33158 -16.00409 -15.69557 -15.32156 -15.18107 -14.99528 -14.65955 -14.60096 -14.49448 -14.22515 -14.06443 -13.74706 -13.58570 -13.50774 -13.34959 -13.25746 -13.14786 -13.11041 -12.86005 -12.64122 -12.00693 -11.76082 -11.56000 -11.25411 -11.12597 -11.04261 -10.60290 -10.28950 -9.88252 -8.68850 -8.34525 -6.13536 0.82136 1.11670 1.31349 1.44585 1.45771 1.47949 1.54979 1.93363 2.27047 2.50907 2.81056 2.84608 2.99879 3.06040 3.27331 3.34276 3.42759 3.52273 3.77548 3.83182 4.04286 4.11256 4.22165 4.40451 4.47949 4.50726 4.52110 4.55229 4.57542 4.74985 4.92842 5.00173 5.10136 5.41819 5.91214 6.18191 6.20415 6.56670 6.77737 6.99563 7.06680 8.74426 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002189 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.372834 B =12788.507062 C =13399.014114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.288 3.712 3 F -0.186 7.186 4 F -0.184 7.184 5 C 0.486 3.514 6 O -0.526 6.526 7 N -0.689 5.689 8 C 0.145 3.855 9 H 0.109 0.891 10 C 0.101 3.899 11 N -0.612 5.612 12 C 0.549 3.451 13 O -0.562 6.562 14 C -0.119 4.119 15 S -0.154 6.154 16 C -0.544 4.544 17 H 0.086 0.914 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.281 1.281 22 H -0.262 1.262 23 H -0.260 1.260 24 C 0.065 3.935 25 C 0.105 3.895 26 H 0.108 0.892 27 O -0.559 6.559 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.422 0.578 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -6.673 -27.697 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.249 3.751 3 F -0.167 7.167 4 F -0.165 7.165 5 C 0.268 3.732 6 O -0.401 6.401 7 N -0.342 5.342 8 C 0.039 3.961 9 H 0.127 0.873 10 C -0.023 4.023 11 N -0.349 5.349 12 C 0.338 3.662 13 O -0.439 6.439 14 C -0.270 4.270 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.104 0.896 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.206 1.206 22 H -0.186 1.186 23 H -0.184 1.184 24 C -0.058 4.058 25 C 0.044 3.956 26 H 0.126 0.874 27 O -0.368 6.368 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.261 0.739 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.426 -6.239 -26.650 27.903 hybrid contribution 2.461 -0.267 0.285 2.492 sum -2.964 -6.506 -26.365 27.317 Atomic orbital electron populations 1.22727 0.86967 1.07247 1.07189 1.21327 0.97000 0.75239 0.81554 1.93087 1.90557 1.36478 1.96583 1.93099 1.90673 1.80886 1.51881 1.21151 0.82517 0.83483 0.86042 1.90808 1.56301 1.33225 1.59749 1.45765 1.16987 1.42877 1.28549 1.21862 0.94584 0.97000 0.82613 0.87320 1.22265 0.89503 1.01285 0.89255 1.48120 1.18688 1.52055 1.16025 1.19893 0.88187 0.77955 0.80203 1.90712 1.41169 1.41120 1.70945 1.23306 0.98545 1.05800 0.99329 1.85679 1.25691 1.67825 1.13485 1.23155 1.02042 1.38301 1.05696 0.89579 1.26151 1.02308 0.94091 0.96687 1.70183 1.37013 1.33377 1.14280 0.84995 0.76851 0.78967 0.77136 1.20647 1.18630 1.18438 1.23356 0.92968 0.96949 0.92534 1.22983 0.91239 0.91336 0.89997 0.87437 1.86524 1.30141 1.46699 1.73430 0.88286 0.86880 0.88115 0.73904 0.91802 0.90744 0.86625 0.87205 0.92014 0.87087 0.88944 0.73908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.92 71.98 0.64 -1.34 16 2 C 0.29 4.18 2.47 29.85 0.07 4.26 16 3 F -0.19 -2.64 16.51 44.97 0.74 -1.90 16 4 F -0.18 -2.96 17.05 44.97 0.77 -2.20 16 5 C 0.49 8.96 7.23 87.66 0.63 9.59 16 6 O -0.53 -12.94 15.74 -3.03 -0.05 -12.99 16 7 N -0.69 -10.38 5.05 -436.92 -2.21 -12.58 16 8 C 0.15 2.48 3.04 46.18 0.14 2.62 16 9 H 0.11 2.22 7.55 -2.39 -0.02 2.20 16 10 C 0.10 2.36 6.63 86.73 0.58 2.93 16 11 N -0.61 -15.61 3.33 -811.78 -2.70 -18.31 16 12 C 0.55 20.18 7.87 87.66 0.69 20.87 16 13 O -0.56 -26.34 16.19 -3.01 -0.05 -26.38 16 14 C -0.12 -4.51 5.16 71.24 0.37 -4.14 16 15 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 16 C -0.54 -30.22 9.50 67.96 0.65 -29.57 16 17 H 0.09 4.36 7.80 -2.92 -0.02 4.34 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.91 -55.46 13.22 21.65 0.29 -55.18 16 20 Si 1.00 42.52 29.55 68.60 2.03 44.55 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 C 0.06 0.98 6.42 86.86 0.56 1.54 16 25 C 0.11 1.21 4.06 31.99 0.13 1.34 16 26 H 0.11 0.81 8.01 -2.38 -0.02 0.79 16 27 O -0.56 -5.70 13.47 -148.98 -2.01 -7.70 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 1.15 7.87 -2.39 -0.02 1.13 16 31 H 0.42 4.32 8.12 -92.71 -0.75 3.57 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.78 8.03 -2.38 -0.02 1.76 16 34 H 0.12 3.78 7.85 -2.39 -0.02 3.76 16 35 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.11 1.30 7.48 -2.39 -0.02 1.28 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.41 0.46 9.11 -74.05 -0.67 -0.22 16 Total: -1.00 -82.18 359.64 0.26 -81.92 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.31 Total: 11.08 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.92 Total: 9.26 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -4.62 Total: -86.07 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.10 Total: -47.08 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.51 Total: -4.10 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -82.18 0.26 -81.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735723929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.700 kcal (2) G-P(sol) polarization free energy of solvation -82.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds