Wall clock time and date at job start Tue Mar 31 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39902 * 109.47205 * 2 1 4 4 F 1.39895 * 109.47239 * 240.00129 * 2 1 3 5 5 C 1.50699 * 109.46825 * 119.99785 * 2 1 3 6 6 O 1.21283 * 120.00296 * 334.99798 * 5 2 1 7 7 N 1.34784 * 119.99805 * 155.00271 * 5 2 1 8 8 C 1.47017 * 125.64698 * 359.97274 * 7 5 2 9 9 C 1.54327 * 107.27319 * 179.00007 * 8 7 5 10 10 H 1.08997 * 110.71819 * 96.16791 * 9 8 7 11 11 O 1.42901 * 110.87266 * 219.37625 * 9 8 7 12 12 C 1.55160 * 102.93675 * 337.80610 * 9 8 7 13 13 H 1.09002 * 111.00648 * 277.38792 * 12 9 8 14 14 N 1.46506 * 111.00123 * 153.57912 * 12 9 8 15 15 C 1.34777 * 119.99920 * 158.18188 * 14 12 9 16 16 O 1.21281 * 119.99939 * 359.97438 * 15 14 12 17 17 C 1.50696 * 119.99769 * 179.97438 * 15 14 12 18 18 S 1.81001 * 109.47158 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00288 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99728 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00425 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00189 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99645 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47056 * 90.00058 * 23 21 19 25 25 H 1.48495 * 109.46899 * 210.00217 * 23 21 19 26 26 H 1.48496 * 109.46909 * 330.00011 * 23 21 19 27 27 C 1.47471 * 125.62963 * 179.97438 * 7 5 2 28 28 H 1.09002 * 109.47297 * 299.99990 * 1 2 3 29 29 H 1.09002 * 109.46935 * 59.99813 * 1 2 3 30 30 H 1.08995 * 109.46870 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.88500 * 59.57916 * 8 7 5 32 32 H 1.09004 * 110.01185 * 298.48777 * 8 7 5 33 33 H 0.96703 * 113.99715 * 293.60722 * 11 9 8 34 34 H 0.96994 * 119.99820 * 338.17529 * 14 12 9 35 35 H 1.09001 * 109.47248 * 299.99862 * 17 15 14 36 36 H 1.09008 * 109.47336 * 59.99971 * 17 15 14 37 37 H 0.97002 * 119.99771 * 179.97438 * 22 21 19 38 38 H 1.09001 * 110.34356 * 85.23058 * 27 7 5 39 39 H 1.08994 * 110.40058 * 322.89344 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3369 -0.7704 2.2224 7 7 3.2543 -1.2789 1.2288 8 6 4.1965 -1.2815 0.1002 9 6 5.4672 -2.0233 0.5658 10 1 5.4379 -3.0686 0.2583 11 8 6.6426 -1.3835 0.0648 12 6 5.3930 -1.9032 2.1109 13 1 5.7821 -0.9422 2.4473 14 7 6.1027 -3.0095 2.7582 15 6 6.5374 -2.8804 4.0274 16 8 6.3415 -1.8483 4.6335 17 6 7.2668 -4.0185 4.6934 18 16 7.7183 -3.5412 6.3799 19 6 8.5331 -5.0120 6.9065 20 1 8.6219 -5.8511 6.2323 21 6 9.0600 -5.0927 8.1881 22 7 9.6683 -6.1917 8.5816 23 14 8.9059 -3.6416 9.3544 24 1 7.6469 -3.7635 10.1323 25 1 10.0633 -3.6291 10.2845 26 1 8.8848 -2.3789 8.5732 27 6 3.8673 -2.0014 2.3588 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.4458 -0.2573 -0.1770 32 1 3.7563 -1.7993 -0.7521 33 1 6.7364 -1.4300 -0.8965 34 1 6.2595 -3.8348 2.2734 35 1 6.6206 -4.8957 4.7243 36 1 8.1693 -4.2519 4.1283 37 1 10.0369 -6.2479 9.4771 38 1 3.5495 -3.0440 2.3592 39 1 3.6047 -1.5235 3.3026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735729367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:46 Heat of formation + Delta-G solvation = -203.672096 kcal Electronic energy + Delta-G solvation = -27038.034306 eV Core-core repulsion = 22550.408793 eV Total energy + Delta-G solvation = -4487.625513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.76955 -47.75174 -40.83824 -39.48755 -38.37709 -36.13723 -34.42397 -32.45567 -32.14622 -30.91077 -29.33900 -28.47915 -25.76052 -25.53369 -23.39305 -21.76297 -20.80238 -20.62302 -18.70399 -18.38595 -17.98736 -17.85150 -17.40005 -16.77770 -16.49840 -16.04506 -15.54668 -15.39325 -14.97887 -14.84192 -14.69332 -14.38498 -14.22984 -14.03587 -13.86159 -13.63146 -13.46198 -13.29981 -13.13714 -13.00264 -12.84250 -12.80826 -12.71821 -12.40215 -12.02891 -11.29146 -11.18958 -11.01949 -11.00294 -10.63352 -10.44512 -9.88056 -9.66362 -9.47092 -9.16947 -9.01444 -8.53065 -6.94480 -6.30594 -4.02784 1.58870 1.85502 2.64902 2.81826 2.98911 3.17376 3.29951 3.32697 3.49886 3.51852 3.57021 3.71777 3.98396 4.02999 4.10143 4.31867 4.37218 4.67107 4.75130 4.78396 4.84925 4.98122 4.99449 5.08570 5.15085 5.19591 5.31561 5.40888 5.43347 5.65775 5.71008 5.95590 6.29952 6.61033 7.06929 7.17333 7.41287 7.92344 8.33835 8.39651 9.15529 10.78525 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002303 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.224380 B =12154.991137 C =12750.548923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.287 3.713 3 F -0.179 7.179 4 F -0.188 7.188 5 C 0.501 3.499 6 O -0.494 6.494 7 N -0.598 5.598 8 C 0.061 3.939 9 C 0.088 3.912 10 H 0.086 0.914 11 O -0.544 6.544 12 C 0.146 3.854 13 H 0.117 0.883 14 N -0.724 5.724 15 C 0.534 3.466 16 O -0.512 6.512 17 C -0.124 4.124 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.094 3.906 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.384 0.616 34 H 0.403 0.597 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.271 0.729 38 H 0.084 0.916 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 9.002 -25.410 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.247 3.753 3 F -0.160 7.160 4 F -0.169 7.169 5 C 0.284 3.716 6 O -0.367 6.367 7 N -0.333 5.333 8 C -0.062 4.062 9 C 0.028 3.972 10 H 0.104 0.896 11 O -0.349 6.349 12 C 0.038 3.962 13 H 0.135 0.865 14 N -0.379 5.379 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.274 4.274 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.030 4.030 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.232 0.768 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.171 10.761 -23.080 30.166 hybrid contribution 0.431 -1.287 -1.132 1.767 sum -15.740 9.475 -24.212 30.393 Atomic orbital electron populations 1.22656 0.88413 1.06501 1.06433 1.21309 0.95900 0.76197 0.81888 1.93108 1.90516 1.35896 1.96508 1.93028 1.90377 1.80626 1.52901 1.20440 0.81303 0.80449 0.89455 1.90831 1.54932 1.57892 1.33087 1.48212 1.15017 1.54179 1.15923 1.23131 0.90023 1.03153 0.89942 1.23044 0.84141 0.96032 0.94016 0.89645 1.86668 1.41431 1.79439 1.27348 1.21893 0.90440 0.93939 0.89883 0.86505 1.45762 1.59756 1.17577 1.14766 1.20380 0.77883 0.89061 0.80610 1.90727 1.55170 1.29487 1.63108 1.23272 1.02819 0.99160 1.02170 1.84837 1.74240 1.24862 1.07418 1.22303 1.41941 0.99734 1.02976 0.89339 1.24714 0.93377 0.96059 0.97161 1.69937 1.35877 1.26344 1.19459 0.86737 0.78710 0.84398 0.82028 1.19189 1.19917 1.15903 1.22863 0.91696 0.97772 0.90622 0.87854 0.88880 0.88678 0.89435 0.88951 0.76788 0.76189 0.88292 0.88211 0.91914 0.89759 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 8.92 37.16 0.33 -0.72 16 2 C 0.29 2.34 2.22 -27.88 -0.06 2.28 16 3 F -0.18 -1.69 17.05 2.25 0.04 -1.65 16 4 F -0.19 -1.36 14.23 2.25 0.03 -1.32 16 5 C 0.50 5.34 7.29 -10.98 -0.08 5.26 16 6 O -0.49 -6.74 16.35 5.55 0.09 -6.65 16 7 N -0.60 -5.74 3.33 -170.50 -0.57 -6.30 16 8 C 0.06 0.41 5.47 -3.07 -0.02 0.39 16 9 C 0.09 0.60 3.96 -24.89 -0.10 0.50 16 10 H 0.09 0.38 8.00 -51.93 -0.42 -0.03 16 11 O -0.54 -3.97 13.40 -35.23 -0.47 -4.44 16 12 C 0.15 1.55 3.09 -65.79 -0.20 1.34 16 13 H 0.12 1.58 7.63 -51.93 -0.40 1.19 16 14 N -0.72 -8.32 5.21 -51.74 -0.27 -8.59 16 15 C 0.53 8.99 7.85 -10.99 -0.09 8.90 16 16 O -0.51 -10.68 15.55 5.56 0.09 -10.60 16 17 C -0.12 -2.28 6.16 36.00 0.22 -2.06 16 18 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 19 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 23 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 C 0.09 1.00 6.60 -2.52 -0.02 0.98 16 28 H 0.10 0.64 7.87 -51.93 -0.41 0.24 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.09 0.45 6.78 -51.93 -0.35 0.10 16 33 H 0.38 0.90 9.12 45.56 0.42 1.31 16 34 H 0.40 3.32 8.54 -40.82 -0.35 2.97 16 35 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.31 8.04 -51.93 -0.42 0.89 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -36.83 354.51 -5.48 -42.31 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.03 Total: 0.98 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 0.20 Total: 5.00 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.06 Total: -40.51 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.29 Total: -21.68 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.07 Total: -2.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.83 -5.48 -42.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735729367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.358 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds