Wall clock time and date at job start Tue Mar 31 2020 20:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39902 * 109.47205 * 2 1 4 4 F 1.39895 * 109.47239 * 240.00129 * 2 1 3 5 5 C 1.50699 * 109.46825 * 119.99785 * 2 1 3 6 6 O 1.21283 * 120.00296 * 334.99798 * 5 2 1 7 7 N 1.34784 * 119.99805 * 155.00271 * 5 2 1 8 8 C 1.47017 * 125.64698 * 359.97274 * 7 5 2 9 9 C 1.54327 * 107.27319 * 179.00007 * 8 7 5 10 10 H 1.08997 * 110.71819 * 96.16791 * 9 8 7 11 11 O 1.42901 * 110.87266 * 219.37625 * 9 8 7 12 12 C 1.55160 * 102.93675 * 337.80610 * 9 8 7 13 13 H 1.09002 * 111.00648 * 277.38792 * 12 9 8 14 14 N 1.46506 * 111.00123 * 153.57912 * 12 9 8 15 15 C 1.34777 * 119.99920 * 158.18188 * 14 12 9 16 16 O 1.21281 * 119.99939 * 359.97438 * 15 14 12 17 17 C 1.50696 * 119.99769 * 179.97438 * 15 14 12 18 18 S 1.81001 * 109.47158 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00288 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99728 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00425 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00189 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99645 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47056 * 90.00058 * 23 21 19 25 25 H 1.48495 * 109.46899 * 210.00217 * 23 21 19 26 26 H 1.48496 * 109.46909 * 330.00011 * 23 21 19 27 27 C 1.47471 * 125.62963 * 179.97438 * 7 5 2 28 28 H 1.09002 * 109.47297 * 299.99990 * 1 2 3 29 29 H 1.09002 * 109.46935 * 59.99813 * 1 2 3 30 30 H 1.08995 * 109.46870 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.88500 * 59.57916 * 8 7 5 32 32 H 1.09004 * 110.01185 * 298.48777 * 8 7 5 33 33 H 0.96703 * 113.99715 * 293.60722 * 11 9 8 34 34 H 0.96994 * 119.99820 * 338.17529 * 14 12 9 35 35 H 1.09001 * 109.47248 * 299.99862 * 17 15 14 36 36 H 1.09008 * 109.47336 * 59.99971 * 17 15 14 37 37 H 0.97002 * 119.99771 * 179.97438 * 22 21 19 38 38 H 1.09001 * 110.34356 * 85.23058 * 27 7 5 39 39 H 1.08994 * 110.40058 * 322.89344 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3369 -0.7704 2.2224 7 7 3.2543 -1.2789 1.2288 8 6 4.1965 -1.2815 0.1002 9 6 5.4672 -2.0233 0.5658 10 1 5.4379 -3.0686 0.2583 11 8 6.6426 -1.3835 0.0648 12 6 5.3930 -1.9032 2.1109 13 1 5.7821 -0.9422 2.4473 14 7 6.1027 -3.0095 2.7582 15 6 6.5374 -2.8804 4.0274 16 8 6.3415 -1.8483 4.6335 17 6 7.2668 -4.0185 4.6934 18 16 7.7183 -3.5412 6.3799 19 6 8.5331 -5.0120 6.9065 20 1 8.6219 -5.8511 6.2323 21 6 9.0600 -5.0927 8.1881 22 7 9.6683 -6.1917 8.5816 23 14 8.9059 -3.6416 9.3544 24 1 7.6469 -3.7635 10.1323 25 1 10.0633 -3.6291 10.2845 26 1 8.8848 -2.3789 8.5732 27 6 3.8673 -2.0014 2.3588 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.4458 -0.2573 -0.1770 32 1 3.7563 -1.7993 -0.7521 33 1 6.7364 -1.4300 -0.8965 34 1 6.2595 -3.8348 2.2734 35 1 6.6206 -4.8957 4.7243 36 1 8.1693 -4.2519 4.1283 37 1 10.0369 -6.2479 9.4771 38 1 3.5495 -3.0440 2.3592 39 1 3.6047 -1.5235 3.3026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735729367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:45 Heat of formation + Delta-G solvation = -234.596413 kcal Electronic energy + Delta-G solvation = -27039.375285 eV Core-core repulsion = 22550.408793 eV Total energy + Delta-G solvation = -4488.966492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.41353 -48.39669 -41.68707 -40.61678 -39.29628 -36.78345 -35.54694 -34.67041 -32.76591 -31.99013 -30.26013 -29.43711 -27.85613 -26.38736 -24.08975 -22.57974 -21.93058 -21.42445 -19.97744 -19.34333 -19.05201 -18.63820 -18.16450 -17.80192 -17.52732 -17.11523 -16.82992 -16.61161 -16.55363 -15.82637 -15.55264 -15.38608 -15.10434 -15.02416 -14.88108 -14.72455 -14.65246 -14.29211 -13.98493 -13.95161 -13.58051 -13.56807 -13.38138 -13.36562 -13.32922 -13.06486 -13.01880 -12.67574 -11.92375 -11.83526 -11.64691 -11.18836 -11.17464 -11.04357 -10.53276 -10.45371 -10.06196 -9.00078 -8.51827 -6.22304 0.77531 0.94684 1.13181 1.30757 1.45282 1.48485 1.54799 2.07644 2.24435 2.34825 2.69805 2.70824 2.86573 2.91987 3.09981 3.35511 3.38163 3.39066 3.79059 3.87154 3.99836 4.11777 4.24484 4.41704 4.46720 4.47130 4.50315 4.53309 4.57379 4.68194 4.77130 4.92902 5.25947 5.70845 5.85907 6.11792 6.35489 6.37992 6.82453 6.93769 7.10399 8.60338 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002303 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.224380 B =12154.991137 C =12750.548923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.293 3.707 3 F -0.187 7.187 4 F -0.179 7.179 5 C 0.492 3.508 6 O -0.533 6.533 7 N -0.599 5.599 8 C 0.061 3.939 9 C 0.106 3.894 10 H 0.124 0.876 11 O -0.564 6.564 12 C 0.140 3.860 13 H 0.084 0.916 14 N -0.696 5.696 15 C 0.539 3.461 16 O -0.559 6.559 17 C -0.109 4.109 18 S -0.181 6.181 19 C -0.526 4.526 20 H 0.066 0.934 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.264 1.264 25 H -0.260 1.260 26 H -0.238 1.238 27 C 0.097 3.903 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.407 0.593 34 H 0.424 0.576 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.277 0.723 38 H 0.102 0.898 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.344 8.998 -28.180 33.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.254 3.746 3 F -0.169 7.169 4 F -0.160 7.160 5 C 0.276 3.724 6 O -0.410 6.410 7 N -0.333 5.333 8 C -0.062 4.062 9 C 0.045 3.955 10 H 0.141 0.859 11 O -0.373 6.373 12 C 0.033 3.967 13 H 0.102 0.898 14 N -0.350 5.350 15 C 0.325 3.675 16 O -0.436 6.436 17 C -0.260 4.260 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.084 0.916 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.734 3.266 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.162 1.162 27 C -0.027 4.027 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.260 0.740 34 H 0.263 0.737 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.858 10.727 -25.947 32.749 hybrid contribution 0.644 -1.314 -0.451 1.532 sum -16.214 9.412 -26.398 32.378 Atomic orbital electron populations 1.22717 0.86472 1.07407 1.07203 1.21275 0.97009 0.75411 0.80930 1.93096 1.90771 1.36492 1.96496 1.93039 1.90432 1.80392 1.52122 1.20996 0.81261 0.80225 0.89934 1.90807 1.56128 1.59387 1.34659 1.48338 1.15098 1.53450 1.16369 1.23357 0.89457 1.03715 0.89623 1.22967 0.84043 0.97996 0.90475 0.85892 1.86618 1.41294 1.79722 1.29710 1.21886 0.89950 0.91934 0.92938 0.89821 1.45407 1.58026 1.18711 1.12899 1.20069 0.77772 0.87732 0.81957 1.90722 1.57289 1.30998 1.64637 1.23252 1.04344 1.00468 0.97915 1.84815 1.74105 1.23650 1.12850 1.22446 1.41791 1.00335 1.02783 0.91615 1.25535 0.93257 0.98386 0.98791 1.70010 1.37009 1.28061 1.20302 0.85895 0.79182 0.81272 0.80204 1.18837 1.18386 1.16194 1.22693 0.91804 0.98415 0.89773 0.88638 0.86541 0.87756 0.89518 0.86054 0.74040 0.73725 0.86212 0.86375 0.91389 0.88035 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.92 71.98 0.64 -1.14 16 2 C 0.29 4.31 2.22 29.85 0.07 4.38 16 3 F -0.19 -3.30 17.05 44.97 0.77 -2.54 16 4 F -0.18 -2.05 14.23 44.97 0.64 -1.41 16 5 C 0.49 10.17 7.29 87.66 0.64 10.81 16 6 O -0.53 -14.82 16.35 -3.04 -0.05 -14.87 16 7 N -0.60 -10.69 3.33 -811.73 -2.70 -13.40 16 8 C 0.06 0.63 5.47 86.73 0.47 1.11 16 9 C 0.11 1.07 3.96 31.79 0.13 1.20 16 10 H 0.12 0.42 8.00 -2.39 -0.02 0.40 16 11 O -0.56 -6.42 13.40 -148.98 -2.00 -8.41 16 12 C 0.14 2.78 3.09 46.37 0.14 2.92 16 13 H 0.08 2.30 7.63 -2.39 -0.02 2.28 16 14 N -0.70 -14.52 5.21 -435.99 -2.27 -16.79 16 15 C 0.54 17.61 7.85 87.66 0.69 18.29 16 16 O -0.56 -23.64 15.55 -3.03 -0.05 -23.69 16 17 C -0.11 -3.89 6.16 71.23 0.44 -3.45 16 18 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 19 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 20 H 0.07 3.95 8.03 -2.91 -0.02 3.93 16 21 C 0.05 2.68 5.50 84.86 0.47 3.14 16 22 N -0.92 -55.49 13.97 21.65 0.30 -55.18 16 23 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 24 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 27 C 0.10 2.00 6.60 86.84 0.57 2.57 16 28 H 0.09 1.13 7.87 -2.39 -0.02 1.11 16 29 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.97 8.06 -2.39 -0.02 0.95 16 32 H 0.12 0.64 6.78 -2.38 -0.02 0.63 16 33 H 0.41 0.31 9.12 -74.06 -0.68 -0.36 16 34 H 0.42 5.42 8.54 -92.71 -0.79 4.63 16 35 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 36 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -82.90 354.51 0.05 -82.85 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -0.38 Total: 6.18 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 4.94 Total: 10.28 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -4.67 Total: -85.37 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -2.09 Total: -46.97 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 1.41 Total: -3.95 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -82.90 0.05 -82.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735729367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.747 kcal (2) G-P(sol) polarization free energy of solvation -82.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds