Wall clock time and date at job start Tue Mar 31 2020 20:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38391 * 119.85011 * 2 1 4 4 C 1.37917 * 120.15329 * 179.97438 * 3 2 1 5 5 C 1.39651 * 119.84431 * 0.02562 * 4 3 2 6 6 C 1.47728 * 120.14686 * 180.02562 * 5 4 3 7 7 O 1.21473 * 120.00427 * 180.02562 * 6 5 4 8 8 O 1.34719 * 120.00020 * 0.02562 * 6 5 4 9 9 C 1.45200 * 116.99738 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47577 * 29.99136 * 9 8 6 11 11 C 1.50697 * 109.46920 * 150.00106 * 9 8 6 12 12 H 1.08000 * 120.00513 * 114.72942 * 11 9 8 13 13 C 1.37880 * 119.99721 * 294.71881 * 11 9 8 14 14 N 1.31521 * 119.99963 * 184.83877 * 13 11 9 15 15 Si 1.86801 * 119.99989 * 4.84784 * 13 11 9 16 16 H 1.48502 * 109.46976 * 84.85417 * 15 13 11 17 17 H 1.48496 * 109.46865 * 204.85361 * 15 13 11 18 18 H 1.48498 * 109.46949 * 324.85526 * 15 13 11 19 19 C 1.53007 * 109.46722 * 269.99465 * 9 8 6 20 20 C 1.52991 * 117.49851 * 134.04497 * 19 9 8 21 21 C 1.52994 * 117.49863 * 65.38458 * 19 9 8 22 22 C 1.39606 * 119.70496 * 359.73060 * 5 4 3 23 23 C 1.37968 * 119.84305 * 0.51650 * 22 5 4 24 24 S 1.76199 * 119.92199 * 179.75184 * 23 22 5 25 25 C 1.81401 * 104.44862 * 114.72888 * 24 23 22 26 26 O 1.42101 * 104.28019 * 358.65711 * 24 23 22 27 27 O 1.42096 * 104.27914 * 230.79956 * 24 23 22 28 28 H 1.09003 * 109.47179 * 270.01915 * 1 2 3 29 29 H 1.09004 * 109.47196 * 30.02001 * 1 2 3 30 30 H 1.09007 * 109.47267 * 150.01966 * 1 2 3 31 31 H 1.07999 * 119.92129 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.07868 * 180.02562 * 4 3 2 33 33 H 0.96999 * 119.99556 * 180.02562 * 14 13 11 34 34 H 1.09008 * 115.54776 * 279.71705 * 19 9 8 35 35 H 1.08995 * 117.49992 * 359.97438 * 20 19 9 36 36 H 1.09007 * 117.50201 * 145.02244 * 20 19 9 37 37 H 1.09004 * 117.49848 * 214.98093 * 21 19 9 38 38 H 1.08998 * 117.49968 * 359.97438 * 21 19 9 39 39 H 1.07993 * 120.07822 * 180.27165 * 22 5 4 40 40 H 1.08999 * 109.47157 * 299.99825 * 25 24 23 41 41 H 1.09002 * 109.46950 * 59.99903 * 25 24 23 42 42 H 1.08998 * 109.47097 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5749 1.2076 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7536 0.0000 0.0017 7 8 6.3610 -1.0519 0.0012 8 8 6.4271 1.1667 0.0032 9 6 7.8772 1.0907 0.0037 10 1 8.1936 0.1834 -0.5109 11 6 8.4435 2.2939 -0.7051 12 1 9.0308 3.0163 -0.1578 13 6 8.2119 2.4725 -2.0525 14 7 8.7838 3.4697 -2.6916 15 14 7.0858 1.2983 -2.9704 16 1 5.6764 1.7385 -2.8118 17 1 7.4439 1.2939 -4.4115 18 1 7.2418 -0.0710 -2.4174 19 6 8.3858 1.0625 1.4465 20 6 9.4580 0.0291 1.7974 21 6 8.0238 -0.1549 2.2995 22 6 3.5751 -1.2072 0.0057 23 6 2.1955 -1.1999 0.0000 24 16 1.3085 -2.7224 -0.0002 25 6 0.4391 -2.7398 1.5919 26 8 2.3218 -3.7184 -0.0259 27 8 0.3845 -2.5896 -1.0714 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6520 2.1334 -0.0004 32 1 4.1112 2.1450 0.0010 33 1 8.6205 3.5955 -3.6394 34 1 8.4366 2.0300 1.9461 35 1 9.8007 -0.6310 1.0007 36 1 10.2140 0.3165 2.5282 37 1 7.8367 0.0116 3.3604 38 1 7.4228 -0.9355 1.8331 39 1 4.1114 -2.1446 0.0102 40 1 1.1656 -2.6922 2.4031 41 1 -0.2283 -1.8800 1.6508 42 1 -0.1427 -3.6575 1.6781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772394642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:48 Heat of formation + Delta-G solvation = -95.496946 kcal Electronic energy + Delta-G solvation = -27584.757621 eV Core-core repulsion = 23623.759713 eV Total energy + Delta-G solvation = -3960.997908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21887 -39.01535 -37.46120 -36.65974 -36.20615 -35.14182 -33.32752 -32.76845 -31.49298 -29.91805 -28.81711 -27.60321 -23.70309 -23.27446 -22.79411 -21.76864 -20.96459 -19.54207 -19.12059 -18.07529 -17.18891 -16.79556 -16.44098 -16.20972 -15.99893 -15.81625 -15.26375 -14.97985 -14.62976 -14.43474 -14.17447 -13.87970 -13.65029 -13.53195 -13.36085 -12.86171 -12.63575 -12.54689 -12.39257 -12.31766 -12.22261 -11.87328 -11.65441 -11.60461 -11.28668 -11.28338 -10.94787 -10.86563 -10.77550 -10.29974 -9.92887 -9.79904 -9.55528 -9.51315 -9.45527 -9.06606 -9.00959 -8.86184 -6.39253 -4.46834 -0.24100 0.49794 0.89123 2.54889 2.70431 3.17808 3.23950 3.34741 3.39805 3.51020 3.71165 3.88266 4.23572 4.33570 4.38023 4.46398 4.50960 4.64995 4.87506 4.92921 5.05957 5.11880 5.22264 5.23775 5.35388 5.39793 5.51168 5.61058 5.62723 5.69607 5.78842 5.95314 6.08229 6.14417 6.18591 6.26016 6.46458 6.57001 6.58579 6.72753 6.91438 7.32409 7.52861 8.18871 8.54832 8.67257 9.21300 10.69601 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.003813 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.639881 B = 7341.714319 C = 8075.522408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.031 3.969 3 C -0.153 4.153 4 C -0.005 4.005 5 C -0.142 4.142 6 C 0.489 3.511 7 O -0.514 6.514 8 O -0.348 6.348 9 C 0.205 3.795 10 H 0.054 0.946 11 C -0.506 4.506 12 H 0.091 0.909 13 C 0.090 3.910 14 N -0.871 5.871 15 Si 0.869 3.131 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.258 1.258 19 C -0.140 4.140 20 C -0.168 4.168 21 C -0.202 4.202 22 C 0.037 3.963 23 C -0.678 4.678 24 S 2.501 3.499 25 C -0.654 4.654 26 O -0.934 6.934 27 O -0.934 6.934 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.272 0.728 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.843 -7.684 9.841 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 C -0.172 4.172 4 C -0.023 4.023 5 C -0.145 4.145 6 C 0.334 3.666 7 O -0.406 6.406 8 O -0.265 6.265 9 C 0.155 3.845 10 H 0.071 0.929 11 C -0.542 4.542 12 H 0.109 0.891 13 C -0.117 4.117 14 N -0.506 5.506 15 Si 0.696 3.304 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.183 1.183 19 C -0.158 4.158 20 C -0.205 4.205 21 C -0.239 4.239 22 C 0.018 3.982 23 C -0.764 4.764 24 S 2.681 3.319 25 C -0.804 4.804 26 O -0.931 6.931 27 O -0.931 6.931 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.569 -8.462 9.019 22.311 hybrid contribution -0.281 0.385 0.027 0.477 sum -18.850 -8.077 9.046 22.414 Atomic orbital electron populations 1.21743 0.90437 1.07362 1.03792 1.19731 0.95783 0.92002 0.89456 1.21187 0.94065 0.97968 1.03964 1.21968 0.94255 0.98724 0.87360 1.19724 0.92049 0.94401 1.08289 1.21110 0.87966 0.84240 0.73330 1.90720 1.70113 1.33269 1.46484 1.87047 1.27197 1.31501 1.80785 1.20876 0.72462 0.99803 0.91402 0.92874 1.20996 1.30646 1.09311 0.93244 0.89148 1.25059 0.94224 0.94913 0.97524 1.69886 1.40944 1.29403 1.10412 0.86964 0.81920 0.82615 0.78877 1.19386 1.21292 1.18258 1.22615 1.02639 0.93640 0.96947 1.22800 0.91600 1.03083 1.03065 1.23182 0.99310 1.02302 0.99068 1.21094 0.91552 0.99112 0.86409 1.30216 1.05481 1.18710 1.22030 1.05155 0.75322 0.74074 0.77343 1.30298 1.15110 1.12005 1.22944 1.93595 1.56499 1.56374 1.86620 1.93541 1.64236 1.85669 1.49642 0.89544 0.89110 0.87675 0.84254 0.83053 0.91833 0.87979 0.88976 0.89407 0.90004 0.87844 0.82341 0.84607 0.84831 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 8.45 36.00 0.30 -0.97 16 2 C 0.03 0.34 5.87 -104.53 -0.61 -0.27 16 3 C -0.15 -1.79 9.68 -39.64 -0.38 -2.17 16 4 C 0.00 -0.07 9.62 -39.17 -0.38 -0.45 16 5 C -0.14 -2.53 5.87 -104.98 -0.62 -3.15 16 6 C 0.49 10.57 6.27 34.61 0.22 10.79 16 7 O -0.51 -11.91 13.33 -19.24 -0.26 -12.17 16 8 O -0.35 -8.09 7.43 -40.54 -0.30 -8.39 16 9 C 0.21 5.01 1.54 -27.88 -0.04 4.97 16 10 H 0.05 1.39 5.91 -51.93 -0.31 1.09 16 11 C -0.51 -13.92 9.35 -34.44 -0.32 -14.24 16 12 H 0.09 2.61 7.99 -52.49 -0.42 2.19 16 13 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 14 N -0.87 -25.45 13.96 55.43 0.77 -24.68 16 15 Si 0.87 22.16 25.56 -169.99 -4.35 17.81 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.26 -6.73 6.42 56.52 0.36 -6.37 16 19 C -0.14 -2.93 5.29 -90.62 -0.48 -3.41 16 20 C -0.17 -3.09 10.18 -26.70 -0.27 -3.36 16 21 C -0.20 -3.71 9.83 -26.70 -0.26 -3.98 16 22 C 0.04 0.59 9.05 -39.17 -0.35 0.23 16 23 C -0.68 -8.41 5.57 -39.64 -0.22 -8.64 16 24 S 2.50 25.15 5.20 -107.50 -0.56 24.59 16 25 C -0.65 -3.10 10.59 101.05 1.07 -2.03 16 26 O -0.93 -12.83 16.73 -57.54 -0.96 -13.80 16 27 O -0.93 -11.33 15.34 -57.54 -0.88 -12.22 16 28 H 0.09 0.35 7.09 -51.93 -0.37 -0.02 16 29 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.10 0.81 4.87 -51.93 -0.25 0.56 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.15 2.26 7.61 -52.49 -0.40 1.86 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16 36 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.10 2.06 5.57 -51.93 -0.29 1.77 16 39 H 0.16 2.56 6.80 -52.49 -0.36 2.20 16 40 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.13 0.38 5.99 -51.92 -0.31 0.07 16 42 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -35.65 355.88 -8.87 -44.53 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.25 Total: 3.19 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -2.45 Total: -24.22 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.77 Total: -24.68 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -2.40 Total: -46.58 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.35 Total: 17.81 kcal Atomic # 16 Polarization: 25.15 SS G_CDS: -0.56 Total: 24.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.65 -8.87 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772394642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.970 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds