Wall clock time and date at job start Tue Mar 31 2020 20:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38391 * 119.85011 * 2 1 4 4 C 1.37917 * 120.15329 * 179.97438 * 3 2 1 5 5 C 1.39651 * 119.84431 * 0.02562 * 4 3 2 6 6 C 1.47728 * 120.14686 * 180.02562 * 5 4 3 7 7 O 1.21473 * 120.00427 * 180.02562 * 6 5 4 8 8 O 1.34719 * 120.00020 * 0.02562 * 6 5 4 9 9 C 1.45200 * 116.99738 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47577 * 29.99136 * 9 8 6 11 11 C 1.50697 * 109.46920 * 150.00106 * 9 8 6 12 12 H 1.08000 * 120.00513 * 114.72942 * 11 9 8 13 13 C 1.37880 * 119.99721 * 294.71881 * 11 9 8 14 14 N 1.31521 * 119.99963 * 184.83877 * 13 11 9 15 15 Si 1.86801 * 119.99989 * 4.84784 * 13 11 9 16 16 H 1.48502 * 109.46976 * 84.85417 * 15 13 11 17 17 H 1.48496 * 109.46865 * 204.85361 * 15 13 11 18 18 H 1.48498 * 109.46949 * 324.85526 * 15 13 11 19 19 C 1.53007 * 109.46722 * 269.99465 * 9 8 6 20 20 C 1.52991 * 117.49851 * 134.04497 * 19 9 8 21 21 C 1.52994 * 117.49863 * 65.38458 * 19 9 8 22 22 C 1.39606 * 119.70496 * 359.73060 * 5 4 3 23 23 C 1.37968 * 119.84305 * 0.51650 * 22 5 4 24 24 S 1.76199 * 119.92199 * 179.75184 * 23 22 5 25 25 C 1.81401 * 104.44862 * 114.72888 * 24 23 22 26 26 O 1.42101 * 104.28019 * 358.65711 * 24 23 22 27 27 O 1.42096 * 104.27914 * 230.79956 * 24 23 22 28 28 H 1.09003 * 109.47179 * 270.01915 * 1 2 3 29 29 H 1.09004 * 109.47196 * 30.02001 * 1 2 3 30 30 H 1.09007 * 109.47267 * 150.01966 * 1 2 3 31 31 H 1.07999 * 119.92129 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.07868 * 180.02562 * 4 3 2 33 33 H 0.96999 * 119.99556 * 180.02562 * 14 13 11 34 34 H 1.09008 * 115.54776 * 279.71705 * 19 9 8 35 35 H 1.08995 * 117.49992 * 359.97438 * 20 19 9 36 36 H 1.09007 * 117.50201 * 145.02244 * 20 19 9 37 37 H 1.09004 * 117.49848 * 214.98093 * 21 19 9 38 38 H 1.08998 * 117.49968 * 359.97438 * 21 19 9 39 39 H 1.07993 * 120.07822 * 180.27165 * 22 5 4 40 40 H 1.08999 * 109.47157 * 299.99825 * 25 24 23 41 41 H 1.09002 * 109.46950 * 59.99903 * 25 24 23 42 42 H 1.08998 * 109.47097 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5749 1.2076 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7536 0.0000 0.0017 7 8 6.3610 -1.0519 0.0012 8 8 6.4271 1.1667 0.0032 9 6 7.8772 1.0907 0.0037 10 1 8.1936 0.1834 -0.5109 11 6 8.4435 2.2939 -0.7051 12 1 9.0308 3.0163 -0.1578 13 6 8.2119 2.4725 -2.0525 14 7 8.7838 3.4697 -2.6916 15 14 7.0858 1.2983 -2.9704 16 1 5.6764 1.7385 -2.8118 17 1 7.4439 1.2939 -4.4115 18 1 7.2418 -0.0710 -2.4174 19 6 8.3858 1.0625 1.4465 20 6 9.4580 0.0291 1.7974 21 6 8.0238 -0.1549 2.2995 22 6 3.5751 -1.2072 0.0057 23 6 2.1955 -1.1999 0.0000 24 16 1.3085 -2.7224 -0.0002 25 6 0.4391 -2.7398 1.5919 26 8 2.3218 -3.7184 -0.0259 27 8 0.3845 -2.5896 -1.0714 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6520 2.1334 -0.0004 32 1 4.1112 2.1450 0.0010 33 1 8.6205 3.5955 -3.6394 34 1 8.4366 2.0300 1.9461 35 1 9.8007 -0.6310 1.0007 36 1 10.2140 0.3165 2.5282 37 1 7.8367 0.0116 3.3604 38 1 7.4228 -0.9355 1.8331 39 1 4.1114 -2.1446 0.0102 40 1 1.1656 -2.6922 2.4031 41 1 -0.2283 -1.8800 1.6508 42 1 -0.1427 -3.6575 1.6781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772394642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:47 Heat of formation + Delta-G solvation = -120.268321 kcal Electronic energy + Delta-G solvation = -27585.831788 eV Core-core repulsion = 23623.759713 eV Total energy + Delta-G solvation = -3962.072075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73833 -40.29465 -38.41801 -38.21954 -37.07209 -36.87931 -34.95979 -34.27364 -32.52859 -30.78230 -30.30065 -28.62863 -25.41347 -24.46113 -24.10888 -23.26162 -22.21206 -21.25582 -20.21144 -19.42614 -19.12474 -18.15319 -17.66460 -17.33693 -17.17032 -17.06319 -16.56069 -16.29033 -16.00366 -15.63521 -15.37172 -15.10117 -15.02661 -14.55223 -14.15434 -13.99935 -13.95327 -13.63973 -13.52632 -13.41196 -13.30697 -13.22649 -13.03480 -12.91637 -12.75663 -12.67583 -12.41170 -12.18102 -11.95048 -11.92724 -11.75963 -11.49326 -11.35721 -11.11481 -11.03109 -10.84284 -10.59241 -10.05681 -8.59256 -6.68962 -0.95050 -0.60245 -0.22015 1.11133 1.14499 1.23902 1.35464 1.70560 1.80618 2.09853 2.34512 2.81806 2.91055 2.95786 3.16489 3.53893 3.59048 3.74310 3.82984 3.89216 4.02853 4.03354 4.09968 4.16477 4.23246 4.27393 4.46406 4.49757 4.63804 4.69773 4.70951 4.77148 4.84705 4.93883 4.94444 5.04335 5.15713 5.21492 5.22715 5.24811 5.28101 5.60539 5.70860 6.04673 6.41943 6.80875 7.02308 8.53984 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.003813 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.639881 B = 7341.714319 C = 8075.522408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 C -0.144 4.144 4 C -0.019 4.019 5 C -0.179 4.179 6 C 0.485 3.515 7 O -0.541 6.541 8 O -0.355 6.355 9 C 0.212 3.788 10 H 0.028 0.972 11 C -0.515 4.515 12 H 0.068 0.932 13 C 0.054 3.946 14 N -0.907 5.907 15 Si 0.912 3.088 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.276 1.276 19 C -0.167 4.167 20 C -0.157 4.157 21 C -0.183 4.183 22 C 0.023 3.977 23 C -0.681 4.681 24 S 2.495 3.505 25 C -0.618 4.618 26 O -0.983 6.983 27 O -0.959 6.959 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.144 0.856 33 H 0.277 0.723 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.153 0.847 41 H 0.166 0.834 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.124 -8.011 12.091 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.047 3.953 3 C -0.162 4.162 4 C -0.038 4.038 5 C -0.181 4.181 6 C 0.331 3.669 7 O -0.435 6.435 8 O -0.272 6.272 9 C 0.160 3.840 10 H 0.046 0.954 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.150 4.150 14 N -0.545 5.545 15 Si 0.738 3.262 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.185 4.185 20 C -0.194 4.194 21 C -0.220 4.220 22 C 0.004 3.996 23 C -0.764 4.764 24 S 2.678 3.322 25 C -0.773 4.773 26 O -0.981 6.981 27 O -0.956 6.956 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.197 0.803 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -22.823 -8.762 11.218 26.898 hybrid contribution 0.850 0.401 -0.551 1.090 sum -21.973 -8.360 10.667 25.816 Atomic orbital electron populations 1.21992 0.86794 1.08215 1.06871 1.20323 0.98196 0.90806 0.86016 1.21621 0.92487 1.00106 1.02026 1.22021 0.96028 0.97251 0.88460 1.19549 0.89393 0.96489 1.12629 1.21760 0.89747 0.83051 0.72292 1.90690 1.71090 1.33777 1.47894 1.86911 1.26246 1.32591 1.81464 1.20498 0.73090 0.97023 0.93381 0.95386 1.21125 1.30980 1.09471 0.93517 0.91369 1.25556 0.95221 0.95929 0.98251 1.69947 1.42608 1.30917 1.10992 0.86306 0.81308 0.80207 0.78421 1.18208 1.20106 1.20115 1.22497 1.05580 0.95071 0.95399 1.22936 0.92203 1.01069 1.03163 1.23174 0.98954 0.99717 1.00142 1.20999 0.93247 0.97628 0.87748 1.30639 1.04061 1.21041 1.20686 1.05359 0.74692 0.72454 0.79698 1.30076 1.15098 1.15214 1.16940 1.93540 1.58809 1.57401 1.88308 1.93510 1.63740 1.85384 1.53006 0.85002 0.87263 0.87897 0.80287 0.83808 0.91365 0.87533 0.90091 0.86083 0.86695 0.89726 0.84209 0.82820 0.81566 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.45 71.23 0.60 -0.96 16 2 C 0.05 0.86 5.87 -19.80 -0.12 0.75 16 3 C -0.14 -2.92 9.68 22.23 0.22 -2.71 16 4 C -0.02 -0.58 9.62 22.54 0.22 -0.36 16 5 C -0.18 -6.56 5.87 -20.10 -0.12 -6.68 16 6 C 0.48 22.02 6.27 70.33 0.44 22.46 16 7 O -0.54 -26.68 13.33 19.92 0.27 -26.41 16 8 O -0.36 -17.26 7.43 -56.29 -0.42 -17.67 16 9 C 0.21 10.82 1.54 29.85 0.05 10.87 16 10 H 0.03 1.57 5.91 -2.39 -0.01 1.56 16 11 C -0.51 -29.66 9.35 25.60 0.24 -29.42 16 12 H 0.07 4.15 7.99 -2.91 -0.02 4.13 16 13 C 0.05 3.19 5.47 84.65 0.46 3.65 16 14 N -0.91 -54.77 13.96 21.45 0.30 -54.47 16 15 Si 0.91 47.42 25.56 68.60 1.75 49.17 16 16 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 18 H -0.28 -15.03 6.42 99.48 0.64 -14.39 16 19 C -0.17 -7.14 5.29 -10.80 -0.06 -7.19 16 20 C -0.16 -5.70 10.18 30.61 0.31 -5.39 16 21 C -0.18 -6.69 9.83 30.61 0.30 -6.38 16 22 C 0.02 0.74 9.05 22.54 0.20 0.94 16 23 C -0.68 -15.86 5.57 22.23 0.12 -15.74 16 24 S 2.50 45.22 5.20 -56.49 -0.29 44.93 16 25 C -0.62 -2.39 10.59 113.37 1.20 -1.19 16 26 O -0.98 -27.32 16.73 -127.65 -2.14 -29.46 16 27 O -0.96 -21.33 15.34 -127.65 -1.96 -23.29 16 28 H 0.13 0.03 7.09 -2.39 -0.02 0.01 16 29 H 0.11 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.10 1.07 4.87 -2.38 -0.01 1.06 16 31 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.14 4.38 7.61 -2.91 -0.02 4.36 16 33 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.11 4.41 8.14 -2.38 -0.02 4.39 16 35 H 0.08 3.11 8.08 -2.39 -0.02 3.09 16 36 H 0.12 3.58 8.14 -2.38 -0.02 3.56 16 37 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 38 H 0.08 3.46 5.57 -2.39 -0.01 3.45 16 39 H 0.14 4.92 6.80 -2.91 -0.02 4.90 16 40 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.17 -0.33 5.99 -2.39 -0.01 -0.34 16 42 H 0.16 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -85.32 355.88 2.57 -82.75 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.99 Total: 11.79 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.07 Total: -37.34 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.30 Total: -54.47 kcal Atomic # 8 Polarization: -92.58 SS G_CDS: -4.25 Total: -96.83 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.75 Total: 49.17 kcal Atomic # 16 Polarization: 45.22 SS G_CDS: -0.29 Total: 44.93 kcal Total: -85.32 2.57 -82.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772394642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.521 kcal (2) G-P(sol) polarization free energy of solvation -85.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds