Wall clock time and date at job start Tue Mar 31 2020 20:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.03004 * 2 1 4 4 C 1.38238 * 120.05692 * 180.25517 * 3 2 1 5 5 S 1.76205 * 119.94483 * 179.74851 * 4 3 2 6 6 O 1.42107 * 106.40019 * 23.56360 * 5 4 3 7 7 O 1.42101 * 106.40466 * 156.47998 * 5 4 3 8 8 N 1.65598 * 107.21847 * 270.02540 * 5 4 3 9 9 C 1.36935 * 119.99963 * 89.99868 * 8 5 4 10 10 H 1.08003 * 120.00396 * 5.41950 * 9 8 5 11 11 C 1.38818 * 119.99785 * 185.42220 * 9 8 5 12 12 N 1.31619 * 120.00000 * 25.67785 * 11 9 8 13 13 Si 1.86803 * 119.99744 * 205.68845 * 11 9 8 14 14 H 1.48490 * 109.47337 * 89.99489 * 13 11 9 15 15 H 1.48502 * 109.46577 * 209.99864 * 13 11 9 16 16 H 1.48497 * 109.46933 * 329.99219 * 13 11 9 17 17 C 1.46503 * 119.99849 * 269.99486 * 8 5 4 18 18 C 1.47202 * 109.46594 * 92.51716 * 17 8 5 19 19 N 5.27872 * 137.69039 * 277.28430 * 2 1 3 20 20 C 1.38281 * 120.11490 * 359.77053 * 4 3 2 21 21 C 1.38120 * 120.05569 * 359.97438 * 20 4 3 22 22 C 1.38710 * 120.03156 * 179.77556 * 2 1 3 23 23 O 1.35906 * 120.05376 * 359.97438 * 22 2 1 24 24 C 1.42904 * 116.99820 * 175.13578 * 23 22 2 25 25 C 1.52997 * 109.46830 * 203.50689 * 24 23 22 26 26 C 1.53008 * 109.46815 * 83.51138 * 24 23 22 27 27 H 1.08997 * 109.46516 * 270.22415 * 1 2 3 28 28 H 1.08992 * 109.47251 * 30.22630 * 1 2 3 29 29 H 1.09000 * 109.46575 * 150.23160 * 1 2 3 30 30 H 1.08005 * 119.96746 * 0.02562 * 3 2 1 31 31 H 0.96998 * 119.99883 * 179.97438 * 12 11 9 32 32 H 1.08990 * 109.47071 * 212.51588 * 17 8 5 33 33 H 1.09003 * 109.46861 * 332.52345 * 17 8 5 34 34 H 1.08001 * 119.97375 * 179.97438 * 20 4 3 35 35 H 1.07999 * 120.03293 * 179.97438 * 21 20 4 36 36 H 1.08993 * 109.47282 * 323.51145 * 24 23 22 37 37 H 1.08993 * 109.47560 * 300.00286 * 25 24 23 38 38 H 1.09003 * 109.47104 * 180.02562 * 25 24 23 39 39 H 1.09002 * 109.47079 * 60.00485 * 25 24 23 40 40 H 1.09000 * 109.46868 * 59.99936 * 26 24 23 41 41 H 1.09003 * 109.46719 * 179.97438 * 26 24 23 42 42 H 1.08998 * 109.46695 * 299.99884 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5808 1.1969 -0.0053 5 16 4.4597 2.7241 -0.0120 6 8 3.5788 3.6963 0.5343 7 8 5.7453 2.4497 0.5276 8 7 4.6974 3.1459 -1.5956 9 6 3.7679 3.9118 -2.2472 10 1 2.9241 4.3138 -1.7059 11 6 3.9100 4.1714 -3.6034 12 7 4.5824 3.3359 -4.3665 13 14 3.1471 5.7066 -4.3454 14 1 4.1228 6.8242 -4.2825 15 1 2.7852 5.4445 -5.7616 16 1 1.9267 6.0713 -3.5821 17 6 5.9024 2.6998 -2.2995 18 6 5.6248 1.4303 -2.9910 19 7 5.4107 0.4505 -3.5246 20 6 4.2752 0.0010 -0.0059 21 6 3.5888 -1.1975 -0.0006 22 6 2.2012 -1.2009 0.0047 23 8 1.5234 -2.3789 0.0098 24 6 2.2996 -3.5743 -0.0935 25 6 1.4276 -4.7019 -0.6494 26 6 2.8188 -3.9665 1.2914 27 1 -0.3632 0.0040 1.0277 28 1 -0.3633 0.8879 -0.5173 29 1 -0.3632 -0.8921 -0.5102 30 1 1.6584 2.1315 0.0004 31 1 4.6814 3.5172 -5.3142 32 1 6.1972 3.4540 -3.0290 33 1 6.7094 2.5535 -1.5815 34 1 5.3552 0.0042 -0.0105 35 1 4.1314 -2.1312 -0.0014 36 1 3.1427 -3.4034 -0.7626 37 1 0.5844 -4.8728 0.0198 38 1 2.0194 -5.6139 -0.7278 39 1 1.0577 -4.4225 -1.6359 40 1 1.9755 -4.1374 1.9605 41 1 3.4104 -4.8786 1.2126 42 1 3.4399 -3.1631 1.6874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299699721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:23 Heat of formation + Delta-G solvation = -50.512758 kcal Electronic energy + Delta-G solvation = -27954.885006 eV Core-core repulsion = 24028.130510 eV Total energy + Delta-G solvation = -3926.754496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.23150 -37.53098 -36.73281 -36.05903 -34.64121 -34.49728 -33.49042 -32.18669 -31.73690 -29.79583 -27.54152 -27.46412 -26.53038 -24.13719 -23.40450 -21.65842 -20.73502 -18.66824 -18.04778 -18.01882 -17.07073 -16.50647 -16.05973 -15.88146 -15.53249 -14.75006 -14.61273 -14.51271 -14.10786 -13.68302 -13.58330 -13.19501 -13.03754 -12.84097 -12.68499 -12.58336 -12.48358 -12.36700 -12.15924 -11.88998 -11.76599 -11.73464 -11.50054 -11.44406 -11.20821 -11.11115 -10.93391 -10.91232 -10.80412 -10.59436 -10.49628 -10.30080 -10.17560 -10.00127 -9.61944 -8.53995 -8.48259 -8.01929 -6.76153 -4.10180 1.34029 1.63408 1.67661 3.06045 3.13796 3.17809 3.18651 3.61812 3.92110 3.95114 4.08883 4.48212 4.59243 4.60754 4.72422 4.88927 4.91306 5.00725 5.03840 5.28781 5.31696 5.33232 5.45161 5.51222 5.57677 5.63052 5.65090 5.78108 5.86710 5.92618 5.93617 5.98386 6.08101 6.15826 6.35328 6.47647 6.53998 6.59902 6.71962 6.89049 7.08003 7.17997 7.56041 8.04210 8.45736 8.81913 8.87073 10.24001 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.004087 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.007905 B = 6849.307286 C = 6953.800124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.145 4.145 3 C 0.014 3.986 4 C -0.694 4.694 5 S 2.559 3.441 6 O -0.975 6.975 7 O -0.993 6.993 8 N -0.803 5.803 9 C -0.255 4.255 10 H 0.127 0.873 11 C 0.032 3.968 12 N -0.841 5.841 13 Si 0.935 3.065 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.223 3.777 18 C 0.241 3.759 19 N -0.476 5.476 20 C 0.006 3.994 21 C -0.229 4.229 22 C 0.161 3.839 23 O -0.308 6.308 24 C 0.073 3.927 25 C -0.146 4.146 26 C -0.180 4.180 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.280 0.720 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -7.913 4.710 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.146 4.146 3 C -0.005 4.005 4 C -0.774 4.774 5 S 2.657 3.343 6 O -0.965 6.965 7 O -0.983 6.983 8 N -0.627 5.627 9 C -0.399 4.399 10 H 0.144 0.856 11 C -0.179 4.179 12 N -0.481 5.481 13 Si 0.760 3.240 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.187 1.187 17 C 0.093 3.907 18 C -0.078 4.078 19 N -0.156 5.156 20 C -0.013 4.013 21 C -0.248 4.248 22 C 0.116 3.884 23 O -0.222 6.222 24 C 0.017 3.983 25 C -0.203 4.203 26 C -0.238 4.238 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.950 -9.137 4.733 10.704 hybrid contribution -0.481 -0.037 -0.741 0.885 sum -3.431 -9.174 3.992 10.576 Atomic orbital electron populations 1.20555 0.90585 1.02640 1.01868 1.19340 0.96437 0.90522 1.08351 1.20607 0.92409 0.97175 0.90291 1.32142 1.06387 1.23283 1.15560 1.09859 0.73409 0.73994 0.77027 1.93387 1.66186 1.58378 1.78565 1.93371 1.39966 1.85910 1.79045 1.55225 1.24329 1.51795 1.31361 1.20129 1.09053 1.17190 0.93566 0.85562 1.25512 0.97518 0.99232 0.95644 1.69987 1.38387 1.32884 1.06866 0.85761 0.79747 0.80506 0.77968 1.19535 1.20855 1.18737 1.19088 0.87653 0.88462 0.95487 1.29617 0.92457 0.93343 0.92406 1.80867 1.08793 1.15193 1.10778 1.20574 0.99506 0.90719 0.90476 1.21262 0.93034 0.99338 1.11155 1.18887 0.90477 0.85237 0.93833 1.86089 1.36233 1.12245 1.87616 1.22443 0.94730 0.83709 0.97402 1.21829 1.00308 0.96369 1.01835 1.22397 1.02066 1.02351 0.96960 0.91786 0.91490 0.91573 0.84230 0.90892 0.84580 0.88165 0.85238 0.85490 0.90760 0.91555 0.90606 0.91614 0.91514 0.91088 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 9.79 36.01 0.35 -1.11 16 2 C -0.15 -2.61 5.89 -104.47 -0.62 -3.23 16 3 C 0.01 0.28 9.17 -39.61 -0.36 -0.08 16 4 C -0.69 -14.38 5.97 -39.57 -0.24 -14.61 16 5 S 2.56 55.79 5.65 -107.50 -0.61 55.18 16 6 O -0.98 -23.02 16.06 -57.17 -0.92 -23.94 16 7 O -0.99 -22.25 15.85 -57.17 -0.91 -23.16 16 8 N -0.80 -17.52 2.88 -62.77 -0.18 -17.70 16 9 C -0.25 -5.75 9.48 -15.06 -0.14 -5.90 16 10 H 0.13 2.83 7.23 -52.48 -0.38 2.45 16 11 C 0.03 0.70 4.93 -17.43 -0.09 0.61 16 12 N -0.84 -19.15 9.02 55.49 0.50 -18.65 16 13 Si 0.94 17.58 29.63 -169.99 -5.04 12.54 16 14 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 15 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 17 C 0.22 4.48 5.44 -6.83 -0.04 4.44 16 18 C 0.24 5.30 13.51 -20.76 -0.28 5.02 16 19 N -0.48 -11.20 18.54 42.15 0.78 -10.41 16 20 C 0.01 0.13 9.51 -39.61 -0.38 -0.25 16 21 C -0.23 -4.02 8.19 -39.43 -0.32 -4.34 16 22 C 0.16 2.82 6.56 -39.22 -0.26 2.57 16 23 O -0.31 -4.69 8.85 -19.45 -0.17 -4.87 16 24 C 0.07 0.88 2.85 -26.73 -0.08 0.80 16 25 C -0.15 -1.38 9.56 37.16 0.36 -1.02 16 26 C -0.18 -1.85 9.15 37.16 0.34 -1.51 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 30 H 0.14 2.61 7.61 -52.48 -0.40 2.21 16 31 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 32 H 0.14 2.67 6.28 -51.93 -0.33 2.34 16 33 H 0.10 1.76 6.96 -51.93 -0.36 1.39 16 34 H 0.13 2.39 7.61 -52.49 -0.40 1.99 16 35 H 0.13 1.89 5.40 -52.49 -0.28 1.61 16 36 H 0.07 0.92 6.36 -51.93 -0.33 0.59 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.75 6.80 -51.93 -0.35 0.40 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -29.02 364.86 -8.10 -37.12 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.32 Total: 7.00 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.75 Total: -18.61 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 1.10 Total: -46.77 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -2.00 Total: -51.96 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.04 Total: 12.54 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -0.61 Total: 55.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.02 -8.10 -37.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299699721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.388 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds