Wall clock time and date at job start Tue Mar 31 2020 20:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 120.00130 * 2 1 4 4 H 1.48499 * 109.47483 * 269.99618 * 3 2 1 5 5 H 1.48499 * 109.47171 * 30.00119 * 3 2 1 6 6 H 1.48503 * 109.47088 * 149.99737 * 3 2 1 7 7 C 1.39949 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99374 * 163.71278 * 7 2 1 9 9 C 1.41390 * 120.00239 * 343.71331 * 7 2 1 10 10 C 1.40738 * 120.24382 * 334.19181 * 9 7 2 11 11 C 1.37602 * 119.74222 * 180.28163 * 10 9 7 12 12 C 1.38657 * 120.25124 * 359.69969 * 11 10 9 13 13 C 1.38618 * 120.50036 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24335 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.12311 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47161 * 265.00290 * 15 14 13 17 17 O 1.21281 * 120.00103 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00351 * 180.02562 * 16 15 14 19 19 C 1.47029 * 125.64243 * 0.02562 * 18 16 15 20 20 C 1.54319 * 107.39734 * 178.98084 * 19 18 16 21 21 C 1.55152 * 102.94637 * 337.72957 * 20 19 18 22 22 H 1.09000 * 111.00415 * 277.42809 * 21 20 19 23 23 S 1.81396 * 111.00584 * 153.61530 * 21 20 19 24 24 N 1.65592 * 104.45200 * 61.45228 * 23 21 20 25 25 O 1.42104 * 110.54508 * 173.08286 * 23 21 20 26 26 O 1.42102 * 110.54159 * 309.82781 * 23 21 20 27 27 C 1.47729 * 125.82189 * 179.91627 * 18 16 15 28 28 H 0.97006 * 119.99749 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.12884 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.87307 * 179.72487 * 11 10 9 31 31 H 1.07993 * 119.74774 * 180.02562 * 12 11 10 32 32 H 1.07996 * 119.87517 * 179.97438 * 13 12 11 33 33 H 1.08996 * 109.46899 * 144.99903 * 15 14 13 34 34 H 1.09008 * 109.46885 * 25.00061 * 15 14 13 35 35 H 1.08996 * 109.88107 * 59.48493 * 19 18 16 36 36 H 1.09000 * 109.87936 * 298.47684 * 19 18 16 37 37 H 1.09008 * 110.72019 * 96.09748 * 20 19 18 38 38 H 1.09003 * 110.72071 * 219.18329 * 20 19 18 39 39 H 0.96998 * 120.00193 * 149.99548 * 24 23 21 40 40 H 0.97008 * 120.00219 * 330.00618 * 24 23 21 41 41 H 1.09001 * 110.28972 * 85.26218 * 27 18 16 42 42 H 1.08997 * 110.47418 * 323.03209 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0554 -1.2309 -0.2618 9 6 1.3435 -2.4118 0.3445 10 6 0.2100 -2.3805 1.1782 11 6 -0.4252 -3.5548 1.5110 12 6 0.0436 -4.7651 1.0234 13 6 1.1556 -4.8074 0.1969 14 6 1.8068 -3.6451 -0.1492 15 6 3.0152 -3.6941 -1.0484 16 6 4.2659 -3.7193 -0.2082 17 8 4.1841 -3.6990 1.0017 18 7 5.4754 -3.7634 -0.8011 19 6 5.7184 -3.7904 -2.2510 20 6 7.2468 -3.8125 -2.4624 21 6 7.7901 -3.2240 -1.1336 22 1 7.7628 -2.1345 -1.1487 23 16 9.4680 -3.8241 -0.7946 24 7 10.3695 -3.2729 -2.0695 25 8 10.0164 -3.1598 0.3356 26 8 9.5246 -5.2392 -0.9112 27 6 6.7787 -3.7904 -0.1060 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1572 -1.4388 1.5586 30 1 -1.2925 -3.5336 2.1543 31 1 -0.4615 -5.6818 1.2894 32 1 1.5124 -5.7557 -0.1769 33 1 3.0263 -2.8132 -1.6902 34 1 2.9733 -4.5923 -1.6646 35 1 5.2928 -2.9005 -2.7147 36 1 5.2710 -4.6845 -2.6852 37 1 7.6016 -4.8333 -2.6057 38 1 7.5283 -3.1857 -3.3086 39 1 11.3099 -3.0693 -1.9466 40 1 9.9572 -3.1535 -2.9395 41 1 7.0430 -4.8134 0.1620 42 1 6.7493 -3.1616 0.7838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777399421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:43 Heat of formation + Delta-G solvation = -85.729499 kcal Electronic energy + Delta-G solvation = -27160.880412 eV Core-core repulsion = 23232.598804 eV Total energy + Delta-G solvation = -3928.281608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86076 -37.92860 -37.35671 -36.78373 -36.26780 -33.64035 -33.63294 -32.26193 -31.33200 -29.53117 -29.40709 -26.92106 -25.11736 -23.72099 -22.16121 -20.94382 -20.19372 -19.69808 -18.90895 -18.21279 -17.62875 -17.19374 -16.85193 -16.59145 -15.91658 -15.49188 -15.13093 -14.89217 -14.43004 -14.33766 -13.95320 -13.68894 -13.55908 -12.93678 -12.64456 -12.59698 -12.51968 -12.43076 -12.33262 -12.21993 -12.01726 -11.76135 -11.58551 -11.48168 -11.18237 -11.11172 -11.04731 -10.98497 -10.75079 -10.68589 -10.41357 -9.49573 -9.40287 -9.28455 -9.16656 -8.53644 -7.31971 -7.30444 -6.75040 -4.35855 -0.15378 2.44776 2.74931 2.89967 3.04532 3.09454 3.17118 3.23580 3.25623 3.30428 3.61584 3.91586 3.92303 4.22740 4.50725 4.64830 4.82208 4.88480 5.06452 5.22346 5.43521 5.46594 5.52705 5.57101 5.63191 5.76684 5.95505 6.03955 6.27449 6.37319 6.39868 6.51088 6.63451 6.78570 7.06998 7.28960 7.41525 7.61565 7.73878 7.92132 8.05737 8.12667 8.30370 8.62664 8.70120 8.90252 9.00563 10.19052 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.003315 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.821522 B = 8443.678771 C = 9715.977687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.106 4.106 12 C -0.239 4.239 13 C -0.080 4.080 14 C -0.185 4.185 15 C -0.063 4.063 16 C 0.532 3.468 17 O -0.512 6.512 18 N -0.627 5.627 19 C 0.109 3.891 20 C -0.115 4.115 21 C -0.611 4.611 22 H 0.154 0.846 23 S 2.628 3.372 24 N -1.248 6.248 25 O -0.958 6.958 26 O -0.953 6.953 27 C 0.132 3.868 28 H 0.280 0.720 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.420 0.580 40 H 0.413 0.587 41 H 0.076 0.924 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.084 -3.132 -10.167 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.125 4.125 12 C -0.258 4.258 13 C -0.098 4.098 14 C -0.187 4.187 15 C -0.102 4.102 16 C 0.322 3.678 17 O -0.385 6.385 18 N -0.367 5.367 19 C -0.016 4.016 20 C -0.153 4.153 21 C -0.720 4.720 22 H 0.172 0.828 23 S 2.718 3.282 24 N -0.922 5.922 25 O -0.947 6.947 26 O -0.942 6.942 27 C 0.007 3.993 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.250 0.750 40 H 0.240 0.760 41 H 0.094 0.906 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.932 -3.533 -8.537 18.417 hybrid contribution 0.156 1.438 -0.796 1.651 sum 16.088 -2.095 -9.333 18.716 Atomic orbital electron populations 1.69821 1.07457 1.29070 1.35659 1.25869 0.94689 1.01085 0.92358 0.86422 0.80853 0.81050 0.79068 1.19580 1.20012 1.18588 1.19444 0.97070 0.91017 1.41145 0.90931 1.17327 0.90770 0.91232 0.87944 1.21303 0.98961 0.96703 1.00852 1.20689 0.98662 0.93453 0.99675 1.20314 1.01548 0.96190 1.07764 1.20307 0.95919 0.95510 0.98113 1.19053 0.99367 0.94117 1.06136 1.20244 0.89855 1.02784 0.97335 1.21149 0.82823 0.74621 0.89171 1.90710 1.85779 1.47419 1.14588 1.48714 1.04764 1.76758 1.06423 1.21889 0.94372 1.02903 0.82397 1.22586 0.96609 1.02286 0.93835 1.31863 1.21339 1.13003 1.05817 0.82834 1.04454 0.75653 0.74813 0.73294 1.53177 1.23706 1.88137 1.27132 1.93626 1.75601 1.76071 1.49420 1.93632 1.85379 1.29561 1.85609 1.21755 0.82371 1.00818 0.94381 0.90944 0.86489 0.89534 0.89604 0.89726 0.88501 0.90499 0.90472 0.90514 0.88627 0.88326 0.74964 0.76018 0.90631 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 10.95 55.55 0.61 -19.73 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -11.93 8.14 -37.74 -0.31 -12.24 16 8 H 0.07 1.84 6.67 -52.48 -0.35 1.49 16 9 C 0.13 3.45 5.56 -106.83 -0.59 2.86 16 10 C -0.16 -4.25 8.69 -38.87 -0.34 -4.59 16 11 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 13 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 14 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 15 C -0.06 -1.21 4.37 -29.03 -0.13 -1.33 16 16 C 0.53 10.43 7.46 -10.99 -0.08 10.35 16 17 O -0.51 -12.41 16.31 5.56 0.09 -12.32 16 18 N -0.63 -9.20 3.34 -170.28 -0.57 -9.77 16 19 C 0.11 1.05 6.48 -3.06 -0.02 1.03 16 20 C -0.11 -0.72 6.12 -24.90 -0.15 -0.87 16 21 C -0.61 -4.95 3.78 -24.59 -0.09 -5.04 16 22 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 23 S 2.63 22.36 5.49 -107.50 -0.59 21.77 16 24 N -1.25 -5.48 9.35 60.35 0.56 -4.91 16 25 O -0.96 -11.97 18.10 -57.54 -1.04 -13.01 16 26 O -0.95 -11.19 17.69 -57.54 -1.02 -12.21 16 27 C 0.13 1.67 6.41 -2.36 -0.02 1.66 16 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 30 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.10 1.82 7.08 -51.93 -0.37 1.45 16 34 H 0.08 1.24 8.05 -51.92 -0.42 0.82 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.53 7.67 -51.92 -0.40 0.13 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.42 1.46 8.96 -34.46 -0.31 1.15 16 40 H 0.41 0.65 8.66 -34.47 -0.30 0.35 16 41 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 42 H 0.10 1.34 8.05 -51.93 -0.42 0.92 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -37.52 362.91 -10.37 -47.89 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.40 Total: 5.63 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.45 Total: -22.42 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.60 Total: -34.42 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.97 Total: -37.54 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 22.36 SS G_CDS: -0.59 Total: 21.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.52 -10.37 -47.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777399421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.841 kcal (2) G-P(sol) polarization free energy of solvation -37.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds