Wall clock time and date at job start Tue Mar 31 2020 20:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99861 * 2 1 4 4 H 1.48494 * 109.46930 * 270.00183 * 3 2 1 5 5 H 1.48496 * 109.46869 * 30.00097 * 3 2 1 6 6 H 1.48500 * 109.46792 * 150.00294 * 3 2 1 7 7 C 1.37877 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00368 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99455 * 0.02562 * 7 2 1 10 10 S 1.81402 * 109.46922 * 179.97438 * 9 7 2 11 11 O 1.42099 * 110.54296 * 68.37635 * 10 9 7 12 12 O 1.42100 * 110.54235 * 291.62582 * 10 9 7 13 13 N 1.65598 * 104.45194 * 179.97438 * 10 9 7 14 14 C 1.34782 * 120.00277 * 64.99645 * 13 10 9 15 15 O 1.21281 * 119.99509 * 359.72939 * 14 13 10 16 16 C 1.50693 * 120.00353 * 180.02562 * 14 13 10 17 17 H 1.09001 * 109.90690 * 300.35388 * 16 14 13 18 18 C 1.53996 * 109.91700 * 61.45709 * 16 14 13 19 19 C 1.54597 * 105.13956 * 120.57629 * 18 16 14 20 20 C 1.54943 * 102.92113 * 21.96001 * 19 18 16 21 21 N 1.47902 * 109.91674 * 179.04852 * 16 14 13 22 22 C 1.39672 * 111.00195 * 94.80524 * 21 16 14 23 23 C 1.38914 * 120.07097 * 53.87434 * 22 21 16 24 24 C 1.38108 * 119.91881 * 179.76856 * 23 22 21 25 25 C 1.38291 * 120.07649 * 0.51409 * 24 23 22 26 26 C 1.38281 * 120.14682 * 359.73954 * 25 24 23 27 27 C 1.38107 * 120.07996 * 0.02562 * 26 25 24 28 28 H 0.96998 * 120.00313 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47728 * 60.00197 * 9 7 2 30 30 H 1.08998 * 109.47721 * 299.99719 * 9 7 2 31 31 H 0.97007 * 120.00147 * 245.00153 * 13 10 9 32 32 H 1.09000 * 110.31066 * 239.49303 * 18 16 14 33 33 H 1.09009 * 110.30604 * 1.56345 * 18 16 14 34 34 H 1.09001 * 110.72248 * 140.31821 * 19 18 16 35 35 H 1.09006 * 110.72464 * 263.42319 * 19 18 16 36 36 H 1.08996 * 110.66352 * 81.02014 * 20 19 18 37 37 H 1.08995 * 110.66431 * 203.98395 * 20 19 18 38 38 H 1.07996 * 120.04013 * 0.02562 * 23 22 21 39 39 H 1.08000 * 119.96182 * 180.25524 * 24 23 22 40 40 H 1.07993 * 119.92587 * 179.72416 * 25 24 23 41 41 H 1.08003 * 119.95970 * 179.97438 * 26 25 24 42 42 H 1.07991 * 120.04075 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 16 2.4299 -3.8779 -0.0029 11 8 3.1266 -3.9393 1.2340 12 8 3.1266 -3.9371 -1.2400 13 7 1.4796 -5.2341 -0.0034 14 6 0.6884 -5.5023 -1.0611 15 8 0.6689 -4.7477 -2.0105 16 6 -0.1768 -6.7361 -1.0614 17 1 0.4457 -7.6258 -0.9663 18 6 -1.1820 -6.6721 0.1035 19 6 -2.5759 -6.7342 -0.5623 20 6 -2.2755 -7.3871 -1.9349 21 7 -0.9646 -6.7987 -2.3115 22 6 -0.3205 -7.5839 -3.2703 23 6 0.0664 -8.8819 -2.9614 24 6 0.6988 -9.6572 -3.9135 25 6 0.9565 -9.1392 -5.1695 26 6 0.5774 -7.8457 -5.4785 27 6 -0.0597 -7.0666 -4.5328 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 1.4922 -5.8355 0.7576 32 1 -1.0430 -7.5230 0.7704 33 1 -1.0650 -5.7381 0.6533 34 1 -3.2544 -7.3569 0.0208 35 1 -2.9873 -5.7329 -0.6901 36 1 -2.1973 -8.4699 -1.8370 37 1 -3.0423 -7.1223 -2.6629 38 1 -0.1308 -9.2856 -1.9794 39 1 0.9963 -10.6677 -3.6754 40 1 1.4552 -9.7460 -5.9107 41 1 0.7805 -7.4441 -6.4603 42 1 -0.3552 -6.0564 -4.7747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835408317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:26 Heat of formation + Delta-G solvation = -69.256743 kcal Electronic energy + Delta-G solvation = -27651.655590 eV Core-core repulsion = 23724.088294 eV Total energy + Delta-G solvation = -3927.567296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90489 -39.15826 -37.56673 -36.19542 -35.14064 -34.12745 -33.33104 -32.71041 -31.02610 -29.67726 -29.02544 -28.52279 -23.97955 -23.47864 -22.81008 -22.10475 -21.28395 -20.28195 -19.14728 -17.78637 -17.67043 -17.11407 -16.41008 -16.11495 -15.62957 -15.55346 -14.99340 -14.73033 -14.66881 -14.43827 -14.15147 -13.92119 -13.72626 -13.52964 -13.15835 -12.64909 -12.53485 -12.36786 -12.12967 -11.93523 -11.69025 -11.53586 -11.44361 -11.40116 -11.32386 -11.26499 -11.16826 -11.00678 -10.89380 -10.62278 -10.39817 -9.91189 -9.74073 -9.13709 -9.02874 -8.86683 -8.68609 -8.62105 -6.30750 -4.41849 1.05619 1.14654 1.31912 2.48787 3.08609 3.23989 3.29197 3.34469 3.61103 3.67992 4.22895 4.30926 4.32364 4.58375 4.64391 4.74882 4.78032 4.84764 4.95838 5.00115 5.01950 5.18100 5.24281 5.28929 5.33234 5.36839 5.51186 5.53050 5.58972 5.63691 5.78618 5.95024 5.96163 6.24970 6.34339 6.42106 6.44238 6.62257 6.71261 6.80362 7.05955 7.27189 7.44124 7.75873 7.91579 8.59130 9.25299 10.80983 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.003414 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.435375 B = 8200.712469 C = 8453.604281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.070 0.930 9 C -0.403 4.403 10 S 2.553 3.447 11 O -0.971 6.971 12 O -0.953 6.953 13 N -1.063 6.063 14 C 0.537 3.463 15 O -0.460 6.460 16 C 0.049 3.951 17 H 0.090 0.910 18 C -0.128 4.128 19 C -0.123 4.123 20 C 0.043 3.957 21 N -0.460 5.460 22 C 0.081 3.919 23 C -0.155 4.155 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.079 4.079 28 H 0.269 0.731 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.422 0.578 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -20.448 -3.095 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.088 0.912 9 C -0.540 4.540 10 S 2.655 3.345 11 O -0.962 6.962 12 O -0.943 6.943 13 N -0.823 5.823 14 C 0.321 3.679 15 O -0.327 6.327 16 C -0.064 4.064 17 H 0.108 0.892 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.083 4.083 21 N -0.181 5.181 22 C -0.013 4.013 23 C -0.175 4.175 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.097 4.097 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.256 0.744 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.788 -19.320 -4.067 20.575 hybrid contribution 0.017 -0.165 0.803 0.820 sum -5.771 -19.486 -3.264 20.583 Atomic orbital electron populations 1.69954 1.06241 1.27710 1.47292 1.24911 0.95030 0.99533 0.93394 0.86350 0.79960 0.81687 0.78830 1.19820 1.20586 1.19074 1.20286 0.92722 0.88512 1.55949 0.91193 1.27590 1.09840 1.09119 1.07406 1.07129 0.77292 0.75997 0.74036 1.93513 1.71267 1.86025 1.45346 1.93529 1.70871 1.85229 1.44693 1.55515 1.56431 1.43799 1.26597 1.20182 0.78820 0.87590 0.81344 1.90895 1.62120 1.47452 1.32247 1.22578 0.95821 0.96716 0.91301 0.89223 1.22474 0.93995 1.04142 0.96008 1.22521 0.96230 1.02513 0.94797 1.23354 0.90487 0.97017 0.97415 1.61931 1.02435 1.47366 1.06406 1.18973 0.98296 0.90532 0.93491 1.21608 1.01210 0.94833 0.99872 1.20964 0.99218 0.99607 0.93594 1.21180 1.00265 0.95932 0.96797 1.21179 0.98363 0.94177 0.99607 1.21161 0.96654 1.00147 0.91775 0.92170 0.88258 0.89756 0.74445 0.89842 0.89458 0.90213 0.89720 0.92980 0.89106 0.86325 0.86200 0.86108 0.85618 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.08 2.19 5.46 -17.82 -0.10 2.10 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.21 9.13 -34.44 -0.31 -15.53 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 9 C -0.40 -10.18 5.64 36.01 0.20 -9.97 16 10 S 2.55 56.70 5.03 -107.50 -0.54 56.16 16 11 O -0.97 -22.55 18.08 -57.54 -1.04 -23.59 16 12 O -0.95 -24.42 17.05 -64.76 -1.10 -25.52 16 13 N -1.06 -17.50 5.47 31.22 0.17 -17.33 16 14 C 0.54 9.28 6.73 -10.99 -0.07 9.20 16 15 O -0.46 -10.02 14.56 -11.48 -0.17 -10.18 16 16 C 0.05 0.61 2.66 -67.80 -0.18 0.43 16 17 H 0.09 0.95 6.29 -51.93 -0.33 0.63 16 18 C -0.13 -1.20 6.47 -25.37 -0.16 -1.37 16 19 C -0.12 -1.07 7.06 -24.87 -0.18 -1.25 16 20 C 0.04 0.41 6.43 -1.89 -0.01 0.40 16 21 N -0.46 -6.03 4.41 -161.01 -0.71 -6.74 16 22 C 0.08 1.05 4.86 -83.79 -0.41 0.64 16 23 C -0.16 -1.67 7.91 -39.38 -0.31 -1.98 16 24 C -0.12 -1.13 10.04 -39.61 -0.40 -1.53 16 25 C -0.12 -1.24 10.04 -39.55 -0.40 -1.63 16 26 C -0.11 -1.29 10.04 -39.61 -0.40 -1.69 16 27 C -0.08 -1.06 9.97 -39.38 -0.39 -1.45 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.10 2.65 7.18 -51.93 -0.37 2.27 16 30 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 31 H 0.42 4.98 8.75 -34.47 -0.30 4.68 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.89 7.62 -51.92 -0.40 0.49 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.42 7.05 -51.93 -0.37 0.06 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.12 1.04 7.04 -52.49 -0.37 0.67 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -37.31 364.07 -10.79 -48.10 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.48 Total: 5.41 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.12 Total: -23.63 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.20 Total: -48.55 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -2.31 Total: -59.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 56.70 SS G_CDS: -0.54 Total: 56.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.31 -10.79 -48.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.158 kcal (2) G-P(sol) polarization free energy of solvation -37.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds