Wall clock time and date at job start Tue Mar 31 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99855 * 2 1 4 4 H 1.48503 * 109.47013 * 270.00044 * 3 2 1 5 5 H 1.48500 * 109.47006 * 30.00195 * 3 2 1 6 6 H 1.48499 * 109.46797 * 150.00382 * 3 2 1 7 7 C 1.37876 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99853 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.46997 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54533 * 68.37782 * 10 9 7 12 12 O 1.42099 * 110.54497 * 291.62453 * 10 9 7 13 13 N 1.65601 * 104.44982 * 180.02562 * 10 9 7 14 14 C 1.34779 * 119.99701 * 64.99926 * 13 10 9 15 15 O 1.21283 * 120.00307 * 0.02562 * 14 13 10 16 16 C 1.50695 * 119.99731 * 179.97438 * 14 13 10 17 17 H 1.08997 * 110.64956 * 298.30420 * 16 14 13 18 18 C 1.54593 * 110.72528 * 61.45547 * 16 14 13 19 19 C 1.53997 * 105.14126 * 140.49070 * 18 16 14 20 20 N 1.47906 * 107.05871 * 1.22735 * 19 18 16 21 21 C 1.39668 * 110.99797 * 214.15532 * 20 19 18 22 22 C 1.38912 * 120.07209 * 239.59460 * 21 20 19 23 23 C 1.38109 * 119.92749 * 179.77403 * 22 21 20 24 24 C 1.38294 * 120.06864 * 0.50554 * 23 22 21 25 25 C 1.38288 * 120.15136 * 359.74931 * 24 23 22 26 26 C 1.38105 * 120.07423 * 359.97438 * 25 24 23 27 27 C 1.48529 * 105.81645 * 334.66750 * 20 19 18 28 28 H 0.97006 * 120.00275 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47007 * 60.00487 * 9 7 2 30 30 H 1.08996 * 109.47300 * 300.00183 * 9 7 2 31 31 H 0.96994 * 120.00160 * 244.99706 * 13 10 9 32 32 H 1.09005 * 110.30819 * 21.57781 * 18 16 14 33 33 H 1.08998 * 110.39751 * 259.45374 * 18 16 14 34 34 H 1.08998 * 109.91454 * 120.57744 * 19 18 16 35 35 H 1.09004 * 109.92077 * 241.87416 * 19 18 16 36 36 H 1.08003 * 120.04054 * 0.02562 * 22 21 20 37 37 H 1.07997 * 119.96720 * 180.25664 * 23 22 21 38 38 H 1.08001 * 119.91985 * 179.72507 * 24 23 22 39 39 H 1.07997 * 119.95818 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.03605 * 180.02562 * 26 25 24 41 41 H 1.08995 * 110.67216 * 280.77320 * 27 20 19 42 42 H 1.09004 * 110.80922 * 157.70497 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 8 3.1266 -3.9383 1.2364 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2341 -0.0013 14 6 0.6892 -5.5025 -1.0595 15 8 0.6743 -4.7511 -2.0114 16 6 -0.1752 -6.7369 -1.0604 17 1 0.4384 -7.6358 -1.0020 18 6 -1.1931 -6.6929 0.1023 19 6 -2.4985 -7.2616 -0.4841 20 7 -2.2179 -7.6327 -1.8881 21 6 -3.3379 -7.4205 -2.6952 22 6 -3.9063 -8.4808 -3.3897 23 6 -5.0166 -8.2685 -4.1832 24 6 -5.5560 -7.0001 -4.2951 25 6 -4.9894 -5.9413 -3.6092 26 6 -3.8826 -6.1478 -2.8095 27 6 -1.0838 -6.7739 -2.3149 28 1 -0.4851 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 1.4917 -5.8352 0.7598 32 1 -1.3436 -5.6657 0.4347 33 1 -0.8497 -7.3116 0.9314 34 1 -2.8052 -8.1432 0.0788 35 1 -3.2819 -6.5046 -0.4496 36 1 -3.4830 -9.4709 -3.3060 37 1 -5.4615 -9.0932 -4.7202 38 1 -6.4216 -6.8360 -4.9198 39 1 -5.4135 -4.9521 -3.6985 40 1 -3.4408 -5.3206 -2.2738 41 1 -1.4329 -5.7725 -2.5666 42 1 -0.5567 -7.2195 -3.1586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:34 Heat of formation + Delta-G solvation = -76.396952 kcal Electronic energy + Delta-G solvation = -27016.895933 eV Core-core repulsion = 23089.019014 eV Total energy + Delta-G solvation = -3927.876919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82461 -39.58878 -37.61903 -36.26835 -35.21072 -34.26655 -33.39011 -32.80200 -31.10496 -29.38124 -29.08364 -28.68823 -24.14897 -23.54190 -22.88726 -22.40973 -20.81290 -20.47323 -19.22508 -18.12362 -17.34214 -17.05251 -16.49236 -16.45122 -15.72032 -15.66744 -15.14816 -14.77014 -14.62544 -14.45194 -14.24720 -14.05572 -13.79914 -13.62756 -13.34537 -12.60739 -12.48236 -12.40379 -12.19430 -12.04625 -11.90399 -11.58067 -11.50730 -11.45746 -11.36620 -11.32926 -11.23202 -11.04800 -10.93865 -10.68517 -10.53701 -9.99427 -9.81713 -9.20873 -9.11633 -8.84127 -8.82572 -8.74058 -6.36754 -4.47823 0.98366 1.07534 1.21959 2.30102 3.08705 3.20140 3.25609 3.30769 3.53529 3.62539 4.18446 4.20505 4.33177 4.45509 4.59640 4.76005 4.79049 4.83264 4.93101 4.96157 5.06706 5.14495 5.16129 5.24072 5.26897 5.28972 5.44866 5.55267 5.59209 5.70029 5.75426 5.80957 5.87299 6.18838 6.31788 6.33140 6.42674 6.52995 6.61625 6.70635 6.94313 7.17904 7.38360 7.67222 7.71794 8.53158 9.19795 10.75001 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.003087 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.083581 B = 9067.734422 C =10415.804156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.071 0.929 9 C -0.403 4.403 10 S 2.553 3.447 11 O -0.968 6.968 12 O -0.952 6.952 13 N -1.059 6.059 14 C 0.541 3.459 15 O -0.484 6.484 16 C -0.115 4.115 17 H 0.120 0.880 18 C -0.127 4.127 19 C 0.040 3.960 20 N -0.484 5.484 21 C 0.081 3.919 22 C -0.095 4.095 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.146 4.146 27 C 0.055 3.945 28 H 0.269 0.731 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.425 0.575 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 -17.620 -2.369 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.540 4.540 10 S 2.655 3.345 11 O -0.959 6.959 12 O -0.942 6.942 13 N -0.818 5.818 14 C 0.326 3.674 15 O -0.355 6.355 16 C -0.139 4.139 17 H 0.138 0.862 18 C -0.165 4.165 19 C -0.086 4.086 20 N -0.205 5.205 21 C -0.014 4.014 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.128 4.128 26 C -0.166 4.166 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.394 -17.591 -3.127 20.670 hybrid contribution -0.439 1.555 0.533 1.702 sum -10.833 -16.035 -2.595 19.525 Atomic orbital electron populations 1.69949 1.06272 1.27765 1.47328 1.24916 0.95041 0.99593 0.93341 0.86337 0.79965 0.81609 0.78847 1.19809 1.20574 1.19049 1.20283 0.92757 0.88454 1.55938 0.91126 1.27595 1.09874 1.09270 1.07267 1.07146 0.77287 0.75969 0.74075 1.93522 1.71144 1.85953 1.45290 1.93532 1.70797 1.85202 1.44718 1.55485 1.56062 1.43801 1.26456 1.20262 0.78752 0.87223 0.81162 1.90925 1.63483 1.48533 1.32526 1.22314 0.96802 0.97158 0.97618 0.86217 1.22486 0.93826 1.02926 0.97253 1.22985 0.96994 1.00282 0.88352 1.62460 1.04190 1.52146 1.01739 1.18996 0.92915 0.92621 0.96821 1.20998 0.95561 0.98681 0.96107 1.21110 0.96341 0.97171 0.99021 1.21197 1.00213 0.93028 0.99808 1.21079 0.95901 0.99199 0.96657 1.21764 0.97305 0.97449 1.00087 1.23231 0.90312 0.97121 0.96497 0.92153 0.88473 0.89766 0.74113 0.90018 0.89324 0.89496 0.92559 0.85379 0.85837 0.86093 0.85928 0.85830 0.91086 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.29 55.43 0.74 -24.06 16 2 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 3 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -14.86 9.13 -34.44 -0.31 -15.17 16 8 H 0.07 1.92 7.71 -52.48 -0.40 1.51 16 9 C -0.40 -9.84 5.64 36.00 0.20 -9.64 16 10 S 2.55 54.13 5.03 -107.50 -0.54 53.59 16 11 O -0.97 -21.73 18.08 -57.54 -1.04 -22.77 16 12 O -0.95 -23.43 17.03 -64.80 -1.10 -24.53 16 13 N -1.06 -16.10 5.55 31.22 0.17 -15.93 16 14 C 0.54 8.41 6.78 -10.99 -0.07 8.34 16 15 O -0.48 -9.67 13.90 -11.61 -0.16 -9.83 16 16 C -0.12 -1.27 3.44 -89.91 -0.31 -1.58 16 17 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.13 -1.14 6.44 -25.37 -0.16 -1.31 16 19 C 0.04 0.37 6.51 -2.75 -0.02 0.36 16 20 N -0.48 -5.16 5.28 -167.16 -0.88 -6.04 16 21 C 0.08 0.89 4.85 -83.79 -0.41 0.48 16 22 C -0.09 -0.92 9.97 -39.38 -0.39 -1.31 16 23 C -0.12 -1.01 10.04 -39.61 -0.40 -1.41 16 24 C -0.12 -1.10 10.04 -39.54 -0.40 -1.50 16 25 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 26 C -0.15 -1.65 7.90 -39.38 -0.31 -1.96 16 27 C 0.05 0.66 5.45 -1.90 -0.01 0.65 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 2.48 7.19 -51.92 -0.37 2.11 16 30 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.42 4.57 8.78 -34.47 -0.30 4.27 16 32 H 0.08 0.80 7.84 -51.93 -0.41 0.40 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.55 6.68 -51.93 -0.35 0.20 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.45 7.05 -52.49 -0.37 1.08 16 41 H 0.07 0.98 6.05 -51.93 -0.31 0.67 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -35.75 363.26 -10.91 -46.66 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.46 Total: 4.93 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -3.09 Total: -23.50 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.03 Total: -46.02 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -2.31 Total: -57.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.54 Total: 53.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.75 -10.91 -46.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.739 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds