Wall clock time and date at job start Tue Mar 31 2020 20:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99665 * 2 1 4 4 H 1.48502 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47231 * 299.99619 * 3 2 1 6 6 H 1.48498 * 109.47289 * 60.00383 * 3 2 1 7 7 C 1.38810 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00402 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.36095 * 0.02562 * 9 7 2 11 11 C 1.53912 * 107.62780 * 178.78926 * 10 9 7 12 12 H 1.08994 * 109.52720 * 100.76808 * 11 10 9 13 13 O 1.40846 * 110.30284 * 221.41111 * 11 10 9 14 14 C 1.41321 * 118.31075 * 68.00337 * 13 11 10 15 15 C 1.51962 * 111.61033 * 56.89696 * 14 13 11 16 16 N 1.44965 * 111.93472 * 319.69816 * 15 14 13 17 17 C 1.34774 * 117.33739 * 203.72797 * 16 15 14 18 18 O 1.21282 * 120.00245 * 177.45429 * 17 16 15 19 19 C 1.50706 * 119.99890 * 357.45595 * 17 16 15 20 20 O 1.42903 * 109.47147 * 179.97438 * 19 17 16 21 21 C 1.36230 * 117.00079 * 179.97438 * 20 19 17 22 22 C 1.38664 * 122.58740 * 180.22526 * 21 20 19 23 23 C 1.33433 * 114.88373 * 180.31286 * 22 21 20 24 24 S 1.75865 * 109.65901 * 359.73863 * 23 22 21 25 25 C 1.33622 * 122.58414 * 0.02934 * 21 20 19 26 26 C 1.44545 * 125.32279 * 24.00950 * 16 15 14 27 27 H 1.08998 * 109.64123 * 106.19051 * 26 16 15 28 28 C 1.46868 * 125.36635 * 180.02562 * 9 7 2 29 29 H 0.97000 * 120.00464 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.82202 * 59.26287 * 10 9 7 31 31 H 1.09004 * 109.82465 * 298.31105 * 10 9 7 32 32 H 1.08997 * 109.05345 * 296.34882 * 14 13 11 33 33 H 1.09005 * 108.99744 * 177.40661 * 14 13 11 34 34 H 1.08997 * 108.99190 * 199.06251 * 15 14 13 35 35 H 1.09001 * 108.92040 * 80.27928 * 15 14 13 36 36 H 1.09001 * 109.47012 * 60.00151 * 19 17 16 37 37 H 1.08995 * 109.46928 * 299.99976 * 19 17 16 38 38 H 1.08001 * 122.55633 * 0.04984 * 22 21 20 39 39 H 1.08003 * 125.16553 * 179.69162 * 23 22 21 40 40 H 1.08005 * 125.20080 * 359.97099 * 25 21 20 41 41 H 1.09003 * 110.06395 * 317.05757 * 28 9 7 42 42 H 1.09004 * 110.06450 * 78.52021 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 -0.1357 -2.5252 0.0017 11 6 -0.4626 -4.0289 -0.0279 12 1 -0.7256 -4.3644 0.9752 13 8 -1.5363 -4.2784 -0.9048 14 6 -1.3291 -4.0868 -2.2895 15 6 -0.1712 -4.9261 -2.8036 16 7 0.9384 -4.9471 -1.8709 17 6 2.1616 -5.2132 -2.3702 18 8 3.1308 -5.1973 -1.6413 19 6 2.3251 -5.5304 -3.8344 20 8 3.7045 -5.7735 -4.1180 21 6 4.0269 -6.0772 -5.4063 22 6 5.3278 -6.3385 -5.8088 23 6 5.4695 -6.6124 -7.1071 24 16 3.9001 -6.5548 -7.8986 25 6 3.1133 -6.1501 -6.3787 26 6 0.8389 -4.7115 -0.4483 27 1 0.9523 -5.6537 0.0879 28 6 1.9379 -3.7230 0.0028 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5527 -2.0388 -0.8801 31 1 -0.5492 -2.0748 0.9041 32 1 -1.1154 -3.0343 -2.4751 33 1 -2.2362 -4.3655 -2.8259 34 1 0.1712 -4.5145 -3.7530 35 1 -0.5186 -5.9467 -2.9644 36 1 1.9752 -4.6873 -4.4301 37 1 1.7413 -6.4170 -4.0815 38 1 6.1632 -6.3176 -5.1247 39 1 6.4058 -6.8348 -7.5973 40 1 2.0541 -5.9816 -6.2516 41 1 2.7751 -3.7511 -0.6947 42 1 2.2790 -3.9771 1.0064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083248721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:09 Heat of formation + Delta-G solvation = -11.499327 kcal Electronic energy + Delta-G solvation = -27893.802622 eV Core-core repulsion = 23968.739875 eV Total energy + Delta-G solvation = -3925.062746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97924 -39.88748 -38.32190 -36.16979 -35.80182 -34.92623 -32.45874 -30.05918 -29.48021 -29.21942 -27.94255 -26.90093 -24.65437 -23.80464 -23.27007 -21.20769 -20.01651 -19.87057 -18.76502 -18.35653 -17.48426 -17.14561 -16.87669 -16.51568 -16.39315 -15.40193 -15.22043 -14.80043 -14.72284 -14.47947 -14.23047 -13.97579 -13.61454 -13.52106 -13.10458 -13.03042 -12.68513 -12.38224 -12.15347 -12.01168 -11.94347 -11.41208 -11.16867 -11.14103 -11.09283 -10.92426 -10.67334 -10.64682 -10.45426 -10.06695 -9.73508 -9.41376 -9.09106 -8.92334 -8.60340 -8.31231 -8.22126 -6.80420 -5.71734 -3.04760 0.73108 1.36675 1.72135 2.48853 2.51400 2.63690 3.39886 3.43124 3.46352 3.49040 4.03025 4.31667 4.50557 4.64390 4.74893 4.79195 4.82872 5.00727 5.07996 5.08288 5.13795 5.25813 5.37874 5.51499 5.60920 5.64201 5.67947 5.71260 5.81196 5.93310 5.95340 6.02658 6.25191 6.44799 6.78984 7.02707 7.11489 7.34016 7.41696 7.51972 7.72280 7.86021 8.22084 8.28355 9.22320 9.82440 10.45430 11.39783 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.003293 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.552702 B = 8499.978161 C = 9620.000358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.112 0.888 13 O -0.369 6.369 14 C 0.059 3.941 15 C 0.074 3.926 16 N -0.580 5.580 17 C 0.510 3.490 18 O -0.500 6.500 19 C 0.046 3.954 20 O -0.276 6.276 21 C 0.121 3.879 22 C -0.138 4.138 23 C -0.187 4.187 24 S 0.113 5.887 25 C -0.328 4.328 26 C 0.110 3.890 27 H 0.075 0.925 28 C 0.109 3.891 29 H 0.251 0.749 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.173 0.827 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -15.643 -14.572 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.027 3.973 11 C 0.010 3.990 12 H 0.129 0.871 13 O -0.286 6.286 14 C -0.019 4.019 15 C -0.049 4.049 16 N -0.315 5.315 17 C 0.296 3.704 18 O -0.375 6.375 19 C -0.033 4.033 20 O -0.189 6.189 21 C 0.064 3.936 22 C -0.170 4.170 23 C -0.323 4.323 24 S 0.372 5.628 25 C -0.463 4.463 26 C 0.006 3.994 27 H 0.093 0.907 28 C -0.017 4.017 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.170 0.830 39 H 0.190 0.810 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.230 -15.661 -15.365 21.974 hybrid contribution 0.767 1.291 1.153 1.894 sum 1.997 -14.370 -14.211 20.309 Atomic orbital electron populations 1.69953 1.04809 1.24871 1.57674 1.24785 0.95747 0.97636 1.02413 0.86033 0.78840 0.83700 0.77194 1.20463 1.21845 1.21714 1.19122 0.90554 0.82182 1.43071 0.90302 1.44245 1.01084 1.00282 1.87358 1.21678 0.85300 0.87990 1.02315 1.23019 0.84584 0.98668 0.92727 0.87085 1.86875 1.37223 1.88968 1.15572 1.22208 0.97034 0.99714 0.82925 1.21724 0.89111 1.01282 0.92827 1.46476 1.06743 1.70081 1.08231 1.19917 0.83389 0.78352 0.88754 1.90663 1.38431 1.48784 1.59597 1.22564 0.82586 1.02420 0.95715 1.86218 1.25397 1.84430 1.22868 1.17923 0.93195 0.98366 0.84112 1.19520 0.96043 1.05287 0.96165 1.25514 1.01850 1.07807 0.97108 1.84122 0.98618 1.70214 1.09800 1.25339 1.03799 1.20449 0.96762 1.21886 0.99147 0.99142 0.79183 0.90735 1.22176 0.95763 0.84528 0.99248 0.93843 0.92606 0.92981 0.91835 0.87823 0.90232 0.91473 0.89077 0.89205 0.82997 0.81000 0.81604 0.89665 0.95535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.26 55.49 0.57 -26.54 16 2 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.33 10.25 -15.06 -0.15 -6.48 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -15.70 3.39 -171.20 -0.58 -16.28 16 10 C 0.15 3.67 5.02 -3.41 -0.02 3.66 16 11 C 0.07 1.30 3.82 -26.33 -0.10 1.20 16 12 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 13 O -0.37 -6.32 10.24 -34.44 -0.35 -6.68 16 14 C 0.06 0.82 6.72 36.63 0.25 1.06 16 15 C 0.07 0.91 5.87 -5.39 -0.03 0.88 16 16 N -0.58 -9.39 3.08 -168.51 -0.52 -9.91 16 17 C 0.51 8.57 7.22 -10.98 -0.08 8.49 16 18 O -0.50 -10.36 13.39 -14.35 -0.19 -10.55 16 19 C 0.05 0.58 3.90 36.01 0.14 0.72 16 20 O -0.28 -4.09 9.74 -40.38 -0.39 -4.49 16 21 C 0.12 1.48 6.64 -41.04 -0.27 1.21 16 22 C -0.14 -1.48 10.17 -41.10 -0.42 -1.89 16 23 C -0.19 -1.58 11.22 29.05 0.33 -1.25 16 24 S 0.11 0.95 23.34 -107.50 -2.51 -1.56 16 25 C -0.33 -3.33 10.09 29.12 0.29 -3.04 16 26 C 0.11 2.04 3.45 -68.23 -0.24 1.81 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 C 0.11 2.45 6.30 -3.03 -0.02 2.43 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.06 1.48 5.74 -51.93 -0.30 1.18 16 31 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 32 H 0.06 1.05 6.81 -51.93 -0.35 0.70 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.80 6.31 -51.93 -0.33 0.47 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.01 6.86 -51.93 -0.36 0.65 16 37 H 0.09 0.85 7.79 -51.93 -0.40 0.45 16 38 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.17 1.37 7.02 -52.48 -0.37 1.00 16 41 H 0.09 2.08 4.81 -52.38 -0.25 1.83 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -34.46 346.27 -9.46 -43.92 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.26 Total: 0.95 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.42 Total: 8.40 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.53 Total: -52.73 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.94 Total: -21.72 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.46 -9.46 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083248721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.419 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds