Wall clock time and date at job start Tue Mar 31 2020 20:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99812 * 2 1 4 4 H 1.48491 * 109.46729 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.46971 * 29.99931 * 3 2 1 6 6 H 1.48502 * 109.47016 * 149.99768 * 3 2 1 7 7 C 1.37869 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99966 * 186.03856 * 7 2 1 9 9 C 1.50704 * 120.00207 * 5.77202 * 7 2 1 10 10 H 1.08997 * 109.47027 * 175.07391 * 9 7 2 11 11 C 1.52998 * 109.46905 * 55.07839 * 9 7 2 12 12 C 1.50700 * 109.47475 * 65.00082 * 11 9 7 13 13 O 1.21277 * 119.99881 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99842 * 180.02562 * 12 11 9 15 15 C 1.47067 * 136.06036 * 359.62073 * 14 12 11 16 16 C 1.53757 * 87.88684 * 152.96896 * 15 14 12 17 17 S 1.81402 * 114.26469 * 139.79433 * 16 15 14 18 18 N 1.65595 * 104.44787 * 86.47913 * 17 16 15 19 19 O 1.42104 * 110.53872 * 198.10176 * 17 16 15 20 20 O 1.42097 * 110.54294 * 334.84950 * 17 16 15 21 21 C 1.47066 * 136.05447 * 180.02562 * 14 12 11 22 22 C 1.50700 * 109.46954 * 295.07821 * 9 7 2 23 23 C 1.38232 * 119.99656 * 270.63589 * 22 9 7 24 24 C 1.38239 * 119.99962 * 179.78928 * 23 22 9 25 25 C 1.38241 * 119.99490 * 0.44075 * 24 23 22 26 26 C 1.38233 * 119.99909 * 359.81360 * 25 24 23 27 27 C 1.38230 * 119.99964 * 90.91080 * 22 9 7 28 28 H 0.96995 * 120.00187 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47177 * 185.00352 * 11 9 7 30 30 H 1.09001 * 109.46885 * 305.00025 * 11 9 7 31 31 H 1.08990 * 113.46962 * 267.70461 * 15 14 12 32 32 H 1.09000 * 113.46042 * 38.14366 * 15 14 12 33 33 H 1.09001 * 114.39583 * 272.68017 * 16 15 14 34 34 H 0.97000 * 120.00430 * 359.97438 * 18 17 16 35 35 H 0.97000 * 120.00005 * 180.02562 * 18 17 16 36 36 H 1.08999 * 113.46993 * 321.85928 * 21 14 12 37 37 H 1.09002 * 113.47367 * 92.24052 * 21 14 12 38 38 H 1.08004 * 120.00377 * 359.97438 * 23 22 9 39 39 H 1.07991 * 120.00115 * 180.27372 * 24 23 22 40 40 H 1.07993 * 119.99432 * 179.83235 * 25 24 23 41 41 H 1.08001 * 119.99408 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.00244 * 359.97433 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0801 -1.1965 0.0989 9 6 1.2568 -2.4959 -0.1301 10 1 1.9687 -3.3185 -0.1977 11 6 0.3935 -2.4636 -1.3929 12 6 1.2824 -2.3908 -2.6076 13 8 2.4879 -2.3675 -2.4763 14 7 0.7378 -2.3515 -3.8398 15 6 -0.6231 -2.3672 -4.3971 16 6 -0.0743 -1.5967 -5.6092 17 16 -0.7492 -2.1371 -7.2039 18 7 -2.1437 -1.2616 -7.3803 19 8 0.0789 -1.6958 -8.2711 20 8 -1.1895 -3.4860 -7.1278 21 6 1.2432 -2.2814 -5.2191 22 6 0.3753 -2.6921 1.0763 23 6 0.8677 -3.3393 2.1941 24 6 0.0605 -3.5155 3.3024 25 6 -1.2420 -3.0525 3.2894 26 6 -1.7360 -2.4100 2.1695 27 6 -0.9274 -2.2300 1.0629 28 1 -0.4850 0.8400 0.0004 29 1 -0.2140 -3.3673 -1.4409 30 1 -0.2572 -1.5895 -1.3658 31 1 -0.9797 -3.3671 -4.6436 32 1 -1.3403 -1.7968 -3.8069 33 1 -0.0679 -0.5134 -5.4889 34 1 -2.4119 -0.6326 -6.6923 35 1 -2.6929 -1.3783 -8.1714 36 1 2.1161 -1.6380 -5.3294 37 1 1.3792 -3.2588 -5.6819 38 1 1.8840 -3.7046 2.2028 39 1 0.4466 -4.0171 4.1774 40 1 -1.8735 -3.1925 4.1542 41 1 -2.7535 -2.0480 2.1596 42 1 -1.3134 -1.7280 0.1880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363280921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:15 Heat of formation + Delta-G solvation = -30.712679 kcal Electronic energy + Delta-G solvation = -27323.081816 eV Core-core repulsion = 23397.185916 eV Total energy + Delta-G solvation = -3925.895900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13451 -38.43551 -37.35746 -37.13338 -36.16689 -34.27713 -33.43971 -31.19265 -30.24371 -29.79378 -28.29866 -26.43004 -25.68558 -23.38006 -22.23011 -21.37430 -19.84316 -19.56363 -18.75331 -17.98989 -17.61739 -16.75881 -16.45614 -16.13353 -15.93944 -15.56416 -15.17305 -14.82624 -14.39676 -14.02383 -13.77743 -13.69209 -13.12643 -12.96087 -12.83915 -12.51519 -12.38258 -12.33665 -12.26651 -12.17975 -11.76083 -11.53806 -11.47988 -11.18830 -11.02436 -10.95453 -10.86673 -10.70397 -10.50875 -10.22322 -10.00962 -9.35377 -9.27639 -8.96389 -8.57620 -8.40785 -7.83961 -7.49106 -6.04856 -4.15810 -0.05164 2.45924 2.52242 2.54946 3.04021 3.24876 3.27101 3.30790 3.37244 3.44718 3.53342 4.21191 4.36431 4.55908 4.71263 4.93549 5.06053 5.13727 5.18576 5.29930 5.54210 5.61976 5.74426 5.78560 5.86219 5.97675 6.14515 6.28149 6.41522 6.48325 6.66422 6.73460 6.75382 7.05239 7.10372 7.21796 7.37690 7.49607 7.64044 7.86054 8.01077 8.11649 8.13191 8.26502 8.80769 8.94561 9.47741 10.88003 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.003376 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.768135 B = 8291.711033 C = 9136.242448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.471 4.471 8 H 0.060 0.940 9 C 0.086 3.914 10 H 0.039 0.961 11 C -0.130 4.130 12 C 0.556 3.444 13 O -0.514 6.514 14 N -0.649 5.649 15 C 0.135 3.865 16 C -0.643 4.643 17 S 2.627 3.373 18 N -1.249 6.249 19 O -0.961 6.961 20 O -0.957 6.957 21 C 0.139 3.861 22 C -0.028 4.028 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.144 4.144 27 C -0.066 4.066 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.415 0.585 35 H 0.419 0.581 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -2.670 -9.863 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.067 3.933 10 H 0.057 0.943 11 C -0.170 4.170 12 C 0.348 3.652 13 O -0.387 6.387 14 N -0.390 5.390 15 C 0.010 3.990 16 C -0.752 4.752 17 S 2.717 3.283 18 N -0.923 5.923 19 O -0.950 6.950 20 O -0.946 6.946 21 C 0.013 3.987 22 C -0.029 4.029 23 C -0.149 4.149 24 C -0.160 4.160 25 C -0.171 4.171 26 C -0.162 4.162 27 C -0.085 4.085 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.184 0.816 34 H 0.241 0.759 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.185 -3.272 -10.118 12.833 hybrid contribution -0.014 1.950 0.604 2.041 sum -7.199 -1.322 -9.514 12.003 Atomic orbital electron populations 1.69696 1.05565 1.26124 1.51582 1.24892 0.94932 0.98995 0.95168 0.86567 0.80103 0.83326 0.77942 1.20938 1.21371 1.19917 1.21010 0.93408 0.89407 1.47015 0.92173 1.17665 0.91740 0.97098 0.86784 0.94307 1.21914 0.99450 1.03654 0.91967 1.21018 0.89376 0.73430 0.81350 1.90653 1.15442 1.48193 1.84368 1.49862 1.07785 1.77256 1.04090 1.22594 0.88288 0.99410 0.88663 1.32542 1.10909 1.12306 1.19463 1.04429 0.73961 0.74226 0.75717 1.53062 1.44826 1.60955 1.33477 1.93618 1.68594 1.82030 1.50778 1.93623 1.79893 1.34656 1.86456 1.22284 0.93837 0.99048 0.83501 1.20273 0.93647 0.92301 0.96684 1.20897 0.98866 1.01270 0.93915 1.20800 0.94686 1.02641 0.97874 1.20774 0.95912 1.02384 0.98043 1.21042 0.99228 1.01111 0.94818 1.21359 0.93292 0.94911 0.98895 0.92931 0.92544 0.85051 0.87904 0.88311 0.81638 0.75876 0.75153 0.88541 0.89445 0.87656 0.88063 0.88279 0.88081 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.80 7.92 55.43 0.44 -21.36 16 2 C 0.06 1.52 5.11 -17.82 -0.09 1.43 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.47 -12.34 7.27 -34.44 -0.25 -12.59 16 8 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 9 C 0.09 2.02 1.97 -92.92 -0.18 1.84 16 10 H 0.04 0.93 7.90 -51.93 -0.41 0.52 16 11 C -0.13 -2.68 3.93 -27.88 -0.11 -2.79 16 12 C 0.56 11.53 7.83 -10.98 -0.09 11.45 16 13 O -0.51 -12.60 15.76 5.56 0.09 -12.51 16 14 N -0.65 -10.32 3.69 -185.07 -0.68 -11.00 16 15 C 0.14 1.48 8.01 -8.37 -0.07 1.41 16 16 C -0.64 -5.88 4.79 -26.07 -0.12 -6.01 16 17 S 2.63 23.16 6.02 -107.50 -0.65 22.52 16 18 N -1.25 -6.75 9.43 60.35 0.57 -6.18 16 19 O -0.96 -12.02 18.10 -57.54 -1.04 -13.06 16 20 O -0.96 -11.33 17.25 -57.54 -0.99 -12.32 16 21 C 0.14 1.74 8.22 -8.50 -0.07 1.67 16 22 C -0.03 -0.63 4.68 -104.63 -0.49 -1.12 16 23 C -0.13 -2.75 9.70 -39.58 -0.38 -3.13 16 24 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 25 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 26 C -0.14 -2.77 10.05 -39.59 -0.40 -3.17 16 27 C -0.07 -1.40 7.40 -39.59 -0.29 -1.69 16 28 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.13 2.82 4.77 -51.93 -0.25 2.58 16 31 H 0.10 0.98 7.42 -51.93 -0.39 0.60 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.17 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.41 1.24 8.83 -34.47 -0.30 0.94 16 35 H 0.42 1.83 8.96 -34.47 -0.31 1.52 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 38 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.14 2.99 5.13 -52.49 -0.27 2.73 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -35.27 360.13 -10.48 -45.75 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.27 Total: 5.77 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.34 Total: -18.99 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.33 Total: -38.54 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.95 Total: -37.89 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 23.16 SS G_CDS: -0.65 Total: 22.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.27 -10.48 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363280921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.039 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds