Wall clock time and date at job start Tue Mar 31 2020 20:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00406 * 2 1 4 4 H 1.48495 * 109.46913 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.46963 * 119.99468 * 3 2 1 6 6 H 1.48501 * 109.47234 * 239.99559 * 3 2 1 7 7 C 1.37883 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00355 * 177.57769 * 7 2 1 9 9 C 1.50709 * 119.99528 * 357.56863 * 7 2 1 10 10 H 1.08999 * 109.46956 * 324.73552 * 9 7 2 11 11 C 1.50694 * 109.47081 * 204.72783 * 9 7 2 12 12 O 1.21285 * 120.00094 * 240.00168 * 11 9 7 13 13 N 1.34780 * 120.00032 * 60.00218 * 11 9 7 14 14 C 1.46504 * 119.99998 * 179.97438 * 13 11 9 15 15 C 1.52991 * 109.47032 * 185.12088 * 14 13 11 16 16 S 1.81405 * 115.55297 * 268.46379 * 15 14 13 17 17 N 1.65602 * 104.44691 * 294.80425 * 16 15 14 18 18 O 1.42110 * 110.53955 * 46.42684 * 16 15 14 19 19 O 1.42098 * 110.54363 * 183.17590 * 16 15 14 20 20 C 1.53002 * 117.49931 * 122.75640 * 15 14 13 21 21 C 1.53002 * 117.49987 * 54.13208 * 15 14 13 22 22 C 1.50698 * 109.46604 * 84.72894 * 9 7 2 23 23 C 1.38238 * 120.00112 * 52.42040 * 22 9 7 24 24 C 1.38234 * 119.99884 * 179.80724 * 23 22 9 25 25 C 1.38236 * 120.00015 * 0.39829 * 24 23 22 26 26 C 1.38237 * 120.00058 * 359.85531 * 25 24 23 27 27 C 1.38233 * 119.99942 * 359.96026 * 26 25 24 28 28 H 0.96998 * 120.00625 * 177.45511 * 1 2 3 29 29 H 0.97001 * 119.99798 * 359.97438 * 13 11 9 30 30 H 1.09001 * 109.47061 * 305.12558 * 14 13 11 31 31 H 1.09002 * 109.46609 * 65.12102 * 14 13 11 32 32 H 0.97002 * 120.00058 * 4.70616 * 17 16 15 33 33 H 0.97001 * 119.99578 * 184.70818 * 17 16 15 34 34 H 1.08999 * 117.49616 * 359.97438 * 20 15 14 35 35 H 1.08999 * 117.50102 * 145.01935 * 20 15 14 36 36 H 1.08996 * 117.50214 * 214.97718 * 21 15 14 37 37 H 1.09007 * 117.49816 * 359.97438 * 21 15 14 38 38 H 1.07994 * 120.00047 * 0.02562 * 23 22 9 39 39 H 1.08003 * 120.00095 * 180.23701 * 24 23 22 40 40 H 1.08002 * 120.00124 * 179.83296 * 25 24 23 41 41 H 1.07997 * 119.99979 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.99919 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1031 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0837 -1.1946 -0.0390 9 6 1.2519 -2.4986 0.0565 10 1 0.3660 -2.3804 0.6804 11 6 2.1400 -3.5661 0.6418 12 8 2.4088 -4.5546 -0.0075 13 7 2.6355 -3.4225 1.8870 14 6 3.4984 -4.4606 2.4563 15 6 3.8167 -4.1170 3.9127 16 16 5.3256 -3.1450 4.1757 17 7 6.5522 -4.1478 3.6938 18 8 5.3833 -2.0572 3.2631 19 8 5.5573 -2.9497 5.5640 20 6 3.4461 -5.1495 4.9793 21 6 2.6367 -3.8574 4.8514 22 6 0.8362 -2.8986 -1.3357 23 6 1.7756 -2.9549 -2.3483 24 6 1.3949 -3.3257 -3.6244 25 6 0.0734 -3.6323 -3.8898 26 6 -0.8670 -3.5710 -2.8784 27 6 -0.4856 -3.2039 -1.6014 28 1 -0.4851 -0.8392 -0.0373 29 1 2.4208 -2.6317 2.4062 30 1 2.9869 -5.4222 2.4131 31 1 4.4252 -4.5161 1.8851 32 1 6.3472 -5.0105 3.3005 33 1 7.4757 -3.8725 3.8049 34 1 2.9752 -6.0733 4.6434 35 1 4.1091 -5.2450 5.8392 36 1 2.7671 -3.1029 5.6272 37 1 1.6336 -3.9310 4.4312 38 1 2.8075 -2.7125 -2.1416 39 1 2.1295 -3.3734 -4.4147 40 1 -0.2246 -3.9194 -4.8874 41 1 -1.8995 -3.8101 -3.0858 42 1 -1.2202 -3.1564 -0.8111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413465713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:31 Heat of formation + Delta-G solvation = -63.801182 kcal Electronic energy + Delta-G solvation = -27568.023316 eV Core-core repulsion = 23640.692591 eV Total energy + Delta-G solvation = -3927.330725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.51464 -38.39573 -37.53521 -37.02903 -35.98978 -33.97125 -33.51921 -33.27818 -30.86045 -30.03969 -28.21174 -26.37159 -23.67706 -23.06594 -22.35678 -21.64168 -20.87573 -19.59212 -19.32850 -17.94694 -17.46996 -17.22012 -16.48042 -16.09786 -15.89657 -15.63229 -15.39749 -14.80455 -14.44791 -14.04367 -14.01864 -13.77218 -13.36731 -12.97094 -12.79872 -12.50206 -12.29270 -12.21987 -12.15224 -12.03833 -12.03236 -11.92743 -11.60710 -11.48287 -11.23334 -10.96010 -10.80231 -10.58475 -10.51828 -10.30391 -10.18875 -10.11973 -8.96931 -8.88972 -8.60908 -8.54669 -8.04174 -7.67225 -6.53179 -4.29634 0.12185 2.26382 2.31119 2.46044 3.04175 3.41464 3.43800 3.51395 3.53099 3.62437 3.82586 3.90027 4.16132 4.41697 4.44874 4.74688 4.77880 5.09821 5.15230 5.20570 5.42281 5.43635 5.55693 5.63932 5.64530 5.69148 5.81118 5.82382 6.06726 6.12955 6.38381 6.45130 6.60545 6.85653 6.88071 6.92844 6.97997 7.27395 7.34138 7.58099 7.81641 7.94394 8.15262 8.26472 8.64397 9.02440 9.42290 10.85411 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.004082 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.160525 B = 6858.484980 C = 8042.453249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.033 3.967 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.594 4.594 8 H 0.061 0.939 9 C 0.044 3.956 10 H 0.064 0.936 11 C 0.537 3.463 12 O -0.564 6.564 13 N -0.727 5.727 14 C 0.181 3.819 15 C -0.666 4.666 16 S 2.645 3.355 17 N -1.249 6.249 18 O -0.939 6.939 19 O -0.965 6.965 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.020 4.020 23 C -0.078 4.078 24 C -0.133 4.133 25 C -0.146 4.146 26 C -0.129 4.129 27 C -0.127 4.127 28 H 0.272 0.728 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.414 0.586 33 H 0.418 0.582 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -10.512 8.334 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.174 4.174 3 Si 0.891 3.109 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.631 4.631 8 H 0.079 0.921 9 C 0.023 3.977 10 H 0.082 0.918 11 C 0.326 3.674 12 O -0.442 6.442 13 N -0.381 5.381 14 C 0.056 3.944 15 C -0.755 4.755 16 S 2.734 3.266 17 N -0.923 5.923 18 O -0.928 6.928 19 O -0.955 6.955 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.021 4.021 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.147 4.147 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.244 0.756 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.240 0.760 33 H 0.248 0.752 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.238 -8.536 8.298 13.440 hybrid contribution 0.179 -2.048 -0.347 2.085 sum 6.417 -10.584 7.951 14.711 Atomic orbital electron populations 1.70808 1.06849 1.31010 1.44228 1.25839 0.96309 1.02580 0.92624 0.83596 0.75029 0.75040 0.77189 1.20694 1.20761 1.21184 1.21608 0.94480 0.89243 1.57779 0.92060 1.18157 0.95891 0.93377 0.90278 0.91799 1.21321 0.79572 0.86793 0.79682 1.90591 1.61320 1.32111 1.60194 1.45915 1.51433 1.23331 1.17412 1.20264 0.95891 0.93012 0.85258 1.32294 1.20644 1.21120 1.01488 1.03884 0.74595 0.73726 0.74348 1.53078 1.22179 1.34776 1.82248 1.93690 1.84680 1.49648 1.64761 1.93589 1.83434 1.84508 1.33947 1.22987 1.02252 0.94061 0.95680 1.22953 0.94804 1.00030 0.97237 1.20109 0.92485 0.92518 0.96952 1.20817 0.99545 0.97241 0.91986 1.20990 0.95801 1.01504 0.96779 1.20825 0.93710 1.03575 0.98277 1.20877 0.98440 1.01838 0.93563 1.20957 0.96035 1.01043 0.96499 0.91638 0.75610 0.90238 0.91462 0.76021 0.75175 0.86557 0.86503 0.86635 0.86051 0.86884 0.87393 0.87522 0.87420 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.98 13.61 55.43 0.75 -24.23 16 2 C 0.03 0.89 5.46 -17.82 -0.10 0.79 16 3 Si 1.06 24.47 29.90 -169.99 -5.08 19.38 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.59 -15.35 7.41 -34.43 -0.26 -15.60 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.04 1.05 1.93 -94.07 -0.18 0.86 16 10 H 0.06 1.54 6.69 -51.93 -0.35 1.19 16 11 C 0.54 11.66 7.04 -10.99 -0.08 11.59 16 12 O -0.56 -13.24 15.48 5.55 0.09 -13.15 16 13 N -0.73 -12.86 5.29 -60.29 -0.32 -13.18 16 14 C 0.18 2.43 5.74 -4.04 -0.02 2.41 16 15 C -0.67 -6.89 2.25 -90.62 -0.20 -7.09 16 16 S 2.65 31.74 5.88 -107.50 -0.63 31.11 16 17 N -1.25 -10.36 9.43 60.35 0.57 -9.79 16 18 O -0.94 -16.07 18.10 -57.54 -1.04 -17.12 16 19 O -0.97 -13.37 17.96 -57.54 -1.03 -14.41 16 20 C -0.11 -0.80 9.85 -26.73 -0.26 -1.07 16 21 C -0.11 -1.01 9.48 -26.73 -0.25 -1.26 16 22 C -0.02 -0.46 4.09 -104.62 -0.43 -0.89 16 23 C -0.08 -1.78 8.39 -39.58 -0.33 -2.12 16 24 C -0.13 -2.65 10.05 -39.58 -0.40 -3.05 16 25 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 27 C -0.13 -2.74 9.41 -39.58 -0.37 -3.12 16 28 H 0.27 7.48 6.38 -40.82 -0.26 7.21 16 29 H 0.41 7.10 8.07 -40.82 -0.33 6.77 16 30 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 31 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.41 2.41 8.84 -34.47 -0.30 2.10 16 33 H 0.42 2.91 8.96 -34.47 -0.31 2.60 16 34 H 0.12 0.69 8.03 -51.93 -0.42 0.27 16 35 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.11 2.66 7.84 -52.49 -0.41 2.25 16 39 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.19 7.96 -52.49 -0.42 1.77 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -36.22 373.25 -10.12 -46.34 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.36 Total: 13.96 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.68 Total: -24.55 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 1.00 Total: -47.20 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.99 Total: -44.67 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.38 kcal Atomic # 16 Polarization: 31.74 SS G_CDS: -0.63 Total: 31.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.22 -10.12 -46.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413465713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.459 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds