Wall clock time and date at job start Tue Mar 31 2020 21:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35131 * 125.61159 * 2 1 4 4 C 1.40371 * 107.11194 * 179.97438 * 3 2 1 5 5 C 1.36547 * 106.70519 * 359.97438 * 4 3 2 6 6 C 1.46654 * 125.98459 * 180.02562 * 5 4 3 7 7 O 1.21698 * 120.00280 * 7.47487 * 6 5 4 8 8 N 1.34771 * 120.00177 * 187.47385 * 6 5 4 9 9 C 1.46968 * 120.59494 * 7.26420 * 8 6 5 10 10 C 1.53811 * 108.39868 * 124.75783 * 9 8 6 11 11 N 1.46969 * 108.57605 * 49.64124 * 10 9 8 12 12 C 1.34779 * 120.59136 * 124.62693 * 11 10 9 13 13 O 1.21280 * 119.99693 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99832 * 0.02562 * 12 11 10 15 15 S 1.81008 * 109.46714 * 180.02562 * 14 12 11 16 16 C 1.76203 * 99.99554 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00083 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99514 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47122 * 59.99732 * 20 18 16 22 22 H 1.48494 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46980 * 300.00023 * 20 18 16 24 24 C 1.46959 * 118.81275 * 304.64603 * 11 10 9 25 25 C 1.46967 * 120.59971 * 187.54859 * 8 6 5 26 26 O 1.33931 * 125.61812 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46757 * 300.02247 * 1 2 3 29 29 H 1.08993 * 109.47612 * 60.02461 * 1 2 3 30 30 H 1.08000 * 126.44880 * 359.95713 * 3 2 1 31 31 H 1.08002 * 126.64561 * 180.26269 * 4 3 2 32 32 H 1.08991 * 109.61349 * 244.54608 * 9 8 6 33 33 H 1.09003 * 109.60195 * 5.05491 * 9 8 6 34 34 H 1.09000 * 109.74397 * 289.85758 * 10 9 8 35 35 H 1.08997 * 109.53554 * 169.30719 * 10 9 8 36 36 H 1.08995 * 109.47414 * 300.00112 * 14 12 11 37 37 H 1.09002 * 109.47052 * 60.00491 * 14 12 11 38 38 H 0.97005 * 119.99736 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.60852 * 295.47997 * 24 11 10 40 40 H 1.09003 * 109.74884 * 175.05840 * 24 11 10 41 41 H 1.09006 * 109.60798 * 354.94833 * 25 8 6 42 42 H 1.09000 * 109.61264 * 115.45437 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6251 0.6532 0.0006 5 6 3.5823 -0.7116 0.0015 6 6 4.7414 -1.6100 0.0029 7 8 5.8625 -1.1568 0.1405 8 7 4.5652 -2.9376 -0.1481 9 6 3.2402 -3.4841 -0.4731 10 6 3.3651 -4.3335 -1.7493 11 7 4.4932 -5.2612 -1.5858 12 6 4.3168 -6.5889 -1.7360 13 8 5.2552 -7.3447 -1.5981 14 6 2.9534 -7.1342 -2.0751 15 16 3.0408 -8.9373 -2.2079 16 6 1.3611 -9.2968 -2.6003 17 1 0.6434 -8.4946 -2.6880 18 6 0.9606 -10.6111 -2.7977 19 7 1.8355 -11.5888 -2.6914 20 14 -0.8199 -10.9923 -3.2144 21 1 -1.1888 -10.3107 -4.4811 22 1 -0.9879 -12.4591 -3.3739 23 1 -1.6988 -10.5102 -2.1188 24 6 5.8170 -4.7152 -1.2553 25 6 5.6933 -3.8654 0.0154 26 8 2.2870 -1.0887 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3634 0.5134 -0.8901 30 1 1.9612 2.1261 -0.0007 31 1 4.5113 1.2704 0.0047 32 1 2.8889 -4.1058 0.3504 33 1 2.5391 -2.6669 -0.6428 34 1 3.5459 -3.6853 -2.6068 35 1 2.4458 -4.8988 -1.9023 36 1 2.2476 -6.8618 -1.2905 37 1 2.6205 -6.7153 -3.0247 38 1 1.5555 -12.5073 -2.8290 39 1 6.1723 -4.0942 -2.0776 40 1 6.5193 -5.5308 -1.0830 41 1 6.6126 -3.3001 0.1684 42 1 5.5125 -4.5136 0.8729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686355254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:50 Heat of formation + Delta-G solvation = -32.790744 kcal Electronic energy + Delta-G solvation = -26577.517826 eV Core-core repulsion = 22651.531815 eV Total energy + Delta-G solvation = -3925.986012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.17917 -40.47213 -39.20585 -37.04922 -34.32150 -33.58824 -32.55881 -32.46374 -31.88304 -29.46718 -28.37220 -26.88952 -25.51901 -24.13161 -23.40889 -22.17533 -21.50128 -20.60702 -19.21512 -18.06104 -17.35925 -17.01452 -16.88132 -16.16589 -16.02915 -15.72748 -15.52761 -15.27494 -14.83721 -14.54587 -14.05894 -14.02967 -13.70053 -13.60379 -13.54316 -13.45623 -13.30173 -13.21704 -12.70932 -12.49196 -12.37323 -11.96803 -11.79303 -11.60342 -11.51546 -11.07889 -11.06902 -10.79782 -10.55608 -10.40527 -9.85473 -9.51010 -9.42310 -9.09358 -8.90215 -8.44160 -8.27708 -6.54588 -6.24888 -3.96188 0.66001 1.92413 2.11341 2.50482 2.79515 2.96175 2.98258 3.20619 3.23041 3.26559 3.52724 3.99247 4.16590 4.31940 4.49289 4.51644 4.59658 4.82824 4.86289 4.90433 4.95673 4.99710 5.08082 5.10568 5.12258 5.22788 5.32709 5.36970 5.45494 5.46631 5.55126 5.66232 5.69004 5.74886 5.81150 5.97474 6.03465 6.11766 6.43275 6.50722 6.92863 7.42577 7.55509 7.65859 8.31166 8.45321 9.20138 10.82448 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002667 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.651983 B =10497.988438 C =12298.735739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.017 3.983 3 C -0.224 4.224 4 C -0.112 4.112 5 C -0.082 4.082 6 C 0.605 3.395 7 O -0.522 6.522 8 N -0.603 5.603 9 C 0.080 3.920 10 C 0.097 3.903 11 N -0.622 5.622 12 C 0.536 3.464 13 O -0.513 6.513 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.100 3.900 25 C 0.099 3.901 26 O -0.156 6.156 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 26.276 5.412 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C -0.243 4.243 4 C -0.133 4.133 5 C -0.134 4.134 6 C 0.393 3.607 7 O -0.401 6.401 8 N -0.335 5.335 9 C -0.043 4.043 10 C -0.028 4.028 11 N -0.359 5.359 12 C 0.324 3.676 13 O -0.386 6.386 14 C -0.302 4.302 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.023 4.023 25 C -0.024 4.024 26 O -0.054 6.054 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.159 24.829 5.677 25.470 hybrid contribution -2.312 0.875 -0.442 2.511 sum -2.153 25.704 5.235 26.320 Atomic orbital electron populations 1.20462 0.84453 1.04781 1.04106 1.23017 0.94514 0.84493 1.01486 1.21585 0.92272 0.99899 1.10587 1.21955 0.98694 0.92838 0.99780 1.21940 0.81834 0.94510 1.15087 1.16689 0.86117 0.80986 0.76884 1.90873 1.22579 1.75440 1.51168 1.47941 1.11036 1.05412 1.69126 1.22753 0.84034 0.99375 0.98113 1.22173 0.91141 0.92535 0.96940 1.48079 1.09374 1.06110 1.72351 1.20388 0.90836 0.80753 0.75601 1.90700 1.42760 1.56356 1.48808 1.23562 0.95850 1.06659 1.04159 1.85443 1.14238 0.91584 1.92006 1.22808 0.94535 0.95361 1.55767 0.90969 1.24994 0.98657 0.95146 0.94750 1.70006 1.34196 0.99952 1.46072 0.86223 0.82823 0.77451 0.78999 1.19920 1.20803 1.19926 1.21901 0.85953 0.98271 0.96212 1.22150 0.90235 0.91543 0.98427 1.84163 1.16130 1.34036 1.71047 0.89968 0.89131 0.89051 0.82645 0.82242 0.90066 0.86743 0.90881 0.87753 0.89193 0.89181 0.92082 0.91182 0.87356 0.87589 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.01 0.37 0.07 16 2 C 0.02 0.12 7.31 -35.41 -0.26 -0.14 16 3 C -0.22 -1.63 10.77 -39.88 -0.43 -2.06 16 4 C -0.11 -1.04 10.63 -39.39 -0.42 -1.46 16 5 C -0.08 -0.87 6.77 -36.80 -0.25 -1.12 16 6 C 0.60 7.35 7.64 -12.87 -0.10 7.25 16 7 O -0.52 -7.62 16.30 5.19 0.08 -7.54 16 8 N -0.60 -6.66 2.94 -173.76 -0.51 -7.17 16 9 C 0.08 0.77 6.33 -3.36 -0.02 0.75 16 10 C 0.10 1.02 6.52 -3.36 -0.02 0.99 16 11 N -0.62 -8.58 2.95 -172.22 -0.51 -9.09 16 12 C 0.54 9.84 7.72 -10.98 -0.08 9.75 16 13 O -0.51 -11.37 15.27 5.56 0.08 -11.29 16 14 C -0.15 -2.95 4.50 36.01 0.16 -2.79 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 17 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 20 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.10 1.22 6.59 -3.60 -0.02 1.20 16 25 C 0.10 1.08 6.60 -3.60 -0.02 1.06 16 26 O -0.16 -1.43 7.23 5.01 0.04 -1.39 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 0.99 4.16 -53.38 -0.22 0.76 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.04 5.91 -51.93 -0.31 0.73 16 36 H 0.09 1.59 7.72 -51.92 -0.40 1.19 16 37 H 0.09 1.61 7.91 -51.92 -0.41 1.20 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.11 1.44 7.00 -51.93 -0.36 1.07 16 41 H 0.11 1.13 6.99 -51.93 -0.36 0.77 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -35.78 365.08 -8.13 -43.90 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.42 Total: -0.85 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.90 Total: 0.85 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.28 Total: -41.34 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.21 Total: -20.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.78 -8.13 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686355254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.113 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds