Wall clock time and date at job start Tue Mar 31 2020 21:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35131 * 125.61159 * 2 1 4 4 C 1.40371 * 107.11194 * 179.97438 * 3 2 1 5 5 C 1.36547 * 106.70519 * 359.97438 * 4 3 2 6 6 C 1.46654 * 125.98459 * 180.02562 * 5 4 3 7 7 O 1.21698 * 120.00280 * 7.47487 * 6 5 4 8 8 N 1.34771 * 120.00177 * 187.47385 * 6 5 4 9 9 C 1.46968 * 120.59494 * 7.26420 * 8 6 5 10 10 C 1.53811 * 108.39868 * 124.75783 * 9 8 6 11 11 N 1.46969 * 108.57605 * 49.64124 * 10 9 8 12 12 C 1.34779 * 120.59136 * 124.62693 * 11 10 9 13 13 O 1.21280 * 119.99693 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99832 * 0.02562 * 12 11 10 15 15 S 1.81008 * 109.46714 * 180.02562 * 14 12 11 16 16 C 1.76203 * 99.99554 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00083 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99514 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47122 * 59.99732 * 20 18 16 22 22 H 1.48494 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46980 * 300.00023 * 20 18 16 24 24 C 1.46959 * 118.81275 * 304.64603 * 11 10 9 25 25 C 1.46967 * 120.59971 * 187.54859 * 8 6 5 26 26 O 1.33931 * 125.61812 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46757 * 300.02247 * 1 2 3 29 29 H 1.08993 * 109.47612 * 60.02461 * 1 2 3 30 30 H 1.08000 * 126.44880 * 359.95713 * 3 2 1 31 31 H 1.08002 * 126.64561 * 180.26269 * 4 3 2 32 32 H 1.08991 * 109.61349 * 244.54608 * 9 8 6 33 33 H 1.09003 * 109.60195 * 5.05491 * 9 8 6 34 34 H 1.09000 * 109.74397 * 289.85758 * 10 9 8 35 35 H 1.08997 * 109.53554 * 169.30719 * 10 9 8 36 36 H 1.08995 * 109.47414 * 300.00112 * 14 12 11 37 37 H 1.09002 * 109.47052 * 60.00491 * 14 12 11 38 38 H 0.97005 * 119.99736 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.60852 * 295.47997 * 24 11 10 40 40 H 1.09003 * 109.74884 * 175.05840 * 24 11 10 41 41 H 1.09006 * 109.60798 * 354.94833 * 25 8 6 42 42 H 1.09000 * 109.61264 * 115.45437 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6251 0.6532 0.0006 5 6 3.5823 -0.7116 0.0015 6 6 4.7414 -1.6100 0.0029 7 8 5.8625 -1.1568 0.1405 8 7 4.5652 -2.9376 -0.1481 9 6 3.2402 -3.4841 -0.4731 10 6 3.3651 -4.3335 -1.7493 11 7 4.4932 -5.2612 -1.5858 12 6 4.3168 -6.5889 -1.7360 13 8 5.2552 -7.3447 -1.5981 14 6 2.9534 -7.1342 -2.0751 15 16 3.0408 -8.9373 -2.2079 16 6 1.3611 -9.2968 -2.6003 17 1 0.6434 -8.4946 -2.6880 18 6 0.9606 -10.6111 -2.7977 19 7 1.8355 -11.5888 -2.6914 20 14 -0.8199 -10.9923 -3.2144 21 1 -1.1888 -10.3107 -4.4811 22 1 -0.9879 -12.4591 -3.3739 23 1 -1.6988 -10.5102 -2.1188 24 6 5.8170 -4.7152 -1.2553 25 6 5.6933 -3.8654 0.0154 26 8 2.2870 -1.0887 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3634 0.5134 -0.8901 30 1 1.9612 2.1261 -0.0007 31 1 4.5113 1.2704 0.0047 32 1 2.8889 -4.1058 0.3504 33 1 2.5391 -2.6669 -0.6428 34 1 3.5459 -3.6853 -2.6068 35 1 2.4458 -4.8988 -1.9023 36 1 2.2476 -6.8618 -1.2905 37 1 2.6205 -6.7153 -3.0247 38 1 1.5555 -12.5073 -2.8290 39 1 6.1723 -4.0942 -2.0776 40 1 6.5193 -5.5308 -1.0830 41 1 6.6126 -3.3001 0.1684 42 1 5.5125 -4.5136 0.8729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686355254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:49 Heat of formation + Delta-G solvation = -56.306393 kcal Electronic energy + Delta-G solvation = -26578.537541 eV Core-core repulsion = 22651.531815 eV Total energy + Delta-G solvation = -3927.005727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.81747 -41.52479 -40.39367 -38.18819 -35.37789 -34.56752 -34.27210 -33.31325 -32.64193 -30.84911 -29.23808 -27.81330 -27.50538 -25.05127 -24.31303 -22.90111 -22.27094 -21.46891 -20.37798 -19.66518 -18.64034 -17.99519 -17.69828 -17.27902 -17.05800 -16.86220 -16.82874 -16.47352 -16.21072 -15.81141 -15.35176 -15.09600 -14.75703 -14.51636 -14.44700 -14.19810 -14.16749 -14.01642 -13.69758 -13.48468 -13.39831 -13.16327 -12.87306 -12.84752 -12.73814 -12.66274 -12.45491 -12.41054 -11.72601 -11.48215 -11.11114 -11.05688 -10.94761 -10.50076 -10.25082 -9.66266 -9.38224 -8.66301 -8.32922 -6.11435 -0.05942 1.21891 1.31949 1.38512 1.45639 1.46148 1.52305 1.55627 1.78298 1.99397 2.16799 2.28754 3.01519 3.22247 3.28582 3.57956 3.65626 3.80730 3.89626 3.93080 4.03426 4.10004 4.16454 4.29403 4.36416 4.42867 4.50224 4.52743 4.58795 4.67425 4.68999 4.77636 4.79713 4.89358 4.92612 5.15374 5.25179 5.36378 5.43412 5.48194 5.81773 6.07303 6.19365 6.21669 6.77327 7.05835 7.08428 8.75989 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002667 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.651983 B =10497.988438 C =12298.735739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.025 3.975 3 C -0.231 4.231 4 C -0.113 4.113 5 C -0.112 4.112 6 C 0.604 3.396 7 O -0.557 6.557 8 N -0.603 5.603 9 C 0.086 3.914 10 C 0.092 3.908 11 N -0.610 5.610 12 C 0.536 3.464 13 O -0.561 6.561 14 C -0.125 4.125 15 S -0.154 6.154 16 C -0.544 4.544 17 H 0.086 0.914 18 C 0.013 3.987 19 N -0.913 5.913 20 Si 0.998 3.002 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.260 1.260 24 C 0.102 3.898 25 C 0.106 3.894 26 O -0.162 6.162 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.181 0.819 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 28.871 5.220 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.134 4.134 5 C -0.163 4.163 6 C 0.394 3.606 7 O -0.438 6.438 8 N -0.335 5.335 9 C -0.037 4.037 10 C -0.031 4.031 11 N -0.344 5.344 12 C 0.325 3.675 13 O -0.439 6.439 14 C -0.276 4.276 15 S 0.074 5.926 16 C -0.692 4.692 17 H 0.104 0.896 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.820 3.180 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.185 1.185 24 C -0.021 4.021 25 C -0.017 4.017 26 O -0.060 6.060 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.199 0.801 31 H 0.179 0.821 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.988 27.480 5.488 28.181 hybrid contribution -1.348 0.276 -0.353 1.420 sum -4.335 27.756 5.134 28.558 Atomic orbital electron populations 1.20686 0.81735 1.05607 1.05770 1.23784 0.95896 0.83887 0.99145 1.21903 0.91213 1.01310 1.10556 1.22214 0.99920 0.92615 0.98611 1.21649 0.82077 0.94552 1.18051 1.16896 0.86276 0.81234 0.76178 1.90843 1.24002 1.76049 1.52880 1.48002 1.11436 1.05224 1.68825 1.22802 0.83626 0.99643 0.97592 1.22461 0.90251 0.92247 0.98146 1.48043 1.10995 1.04967 1.70440 1.20199 0.89771 0.81991 0.75573 1.90688 1.43840 1.57988 1.51356 1.23383 0.97348 1.00748 1.06095 1.85663 1.15531 0.99056 1.92396 1.23166 0.94512 0.96102 1.55382 0.89581 1.26139 1.03816 0.94903 0.94354 1.70185 1.36816 1.00411 1.47508 0.85004 0.76423 0.77201 0.79387 1.18567 1.20721 1.18458 1.21966 0.84881 0.97972 0.97290 1.22038 0.90700 0.91332 0.97610 1.84105 1.15637 1.34927 1.71345 0.89592 0.87421 0.87215 0.80128 0.82113 0.89782 0.85234 0.89251 0.86610 0.86853 0.87109 0.92058 0.90007 0.88722 0.87386 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.41 71.24 0.74 0.45 16 2 C 0.02 0.28 7.31 24.97 0.18 0.46 16 3 C -0.23 -2.74 10.77 22.07 0.24 -2.51 16 4 C -0.11 -1.94 10.63 22.39 0.24 -1.70 16 5 C -0.11 -2.23 6.77 24.07 0.16 -2.07 16 6 C 0.60 14.31 7.64 86.44 0.66 14.97 16 7 O -0.56 -16.33 16.30 -4.34 -0.07 -16.40 16 8 N -0.60 -12.64 2.94 -821.89 -2.42 -15.06 16 9 C 0.09 1.46 6.33 86.56 0.55 2.00 16 10 C 0.09 1.70 6.52 86.56 0.56 2.26 16 11 N -0.61 -16.07 2.95 -817.16 -2.41 -18.48 16 12 C 0.54 19.53 7.72 87.66 0.68 20.20 16 13 O -0.56 -25.62 15.27 -3.03 -0.05 -25.67 16 14 C -0.12 -4.73 4.50 71.24 0.32 -4.41 16 15 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 16 C -0.54 -30.12 9.50 67.96 0.65 -29.48 16 17 H 0.09 4.35 7.80 -2.91 -0.02 4.32 16 18 C 0.01 0.70 5.49 84.86 0.47 1.17 16 19 N -0.91 -55.45 13.22 21.65 0.29 -55.17 16 20 Si 1.00 42.40 29.55 68.60 2.03 44.42 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 C 0.10 2.44 6.59 86.41 0.57 3.01 16 25 C 0.11 2.27 6.60 86.41 0.57 2.84 16 26 O -0.16 -2.59 7.23 -4.97 -0.04 -2.63 16 27 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.89 4.16 -25.44 -0.11 1.79 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.12 1.91 5.91 -2.39 -0.01 1.90 16 36 H 0.11 3.76 7.72 -2.40 -0.02 3.74 16 37 H 0.11 3.74 7.91 -2.39 -0.02 3.72 16 38 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.09 2.58 7.00 -2.39 -0.02 2.56 16 41 H 0.11 2.31 6.99 -2.38 -0.02 2.30 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -80.34 365.08 3.71 -76.63 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.95 Total: 14.65 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.58 Total: 7.21 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.54 Total: -88.71 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.15 Total: -44.69 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -80.34 3.71 -76.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686355254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.324 kcal (2) G-P(sol) polarization free energy of solvation -80.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds