Wall clock time and date at job start Tue Mar 31 2020 21:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 H 1.09000 * 109.56310 * 57.60905 * 3 2 1 5 5 C 1.50409 * 109.82504 * 297.45832 * 3 2 1 6 6 O 1.21276 * 118.46247 * 47.51678 * 5 3 2 7 7 N 1.33376 * 123.04260 * 227.77098 * 5 3 2 8 8 C 1.45651 * 124.59354 * 3.76104 * 7 5 3 9 9 C 1.52978 * 110.77073 * 338.38187 * 8 7 5 10 10 N 1.47045 * 109.56862 * 177.84346 * 3 2 1 11 11 S 1.65596 * 121.35815 * 342.70897 * 10 3 2 12 12 O 1.42100 * 106.40197 * 37.95324 * 11 10 3 13 13 O 1.42096 * 106.40546 * 170.88026 * 11 10 3 14 14 C 1.76205 * 107.21460 * 284.41920 * 11 10 3 15 15 C 1.38636 * 119.74866 * 276.80303 * 14 11 10 16 16 C 1.37613 * 120.24889 * 179.76721 * 15 14 11 17 17 C 1.40711 * 119.74732 * 0.48455 * 16 15 14 18 18 C 1.41391 * 120.24702 * 179.79237 * 17 16 15 19 19 H 1.08000 * 119.99963 * 33.62267 * 18 17 16 20 20 C 1.39945 * 119.99988 * 213.62203 * 18 17 16 21 21 N 1.30821 * 120.00403 * 358.31209 * 20 18 17 22 22 Si 1.86805 * 120.00075 * 178.31378 * 20 18 17 23 23 H 1.48506 * 109.47009 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47121 * 120.00069 * 22 20 18 25 25 H 1.48502 * 109.47200 * 240.00158 * 22 20 18 26 26 C 1.40716 * 119.51023 * 359.76768 * 17 16 15 27 27 C 1.37624 * 119.74316 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.46842 * 190.61544 * 1 2 3 29 29 H 1.08992 * 109.47391 * 310.61694 * 1 2 3 30 30 H 1.08997 * 109.47005 * 70.62424 * 1 2 3 31 31 H 1.08999 * 109.47406 * 240.00594 * 2 1 3 32 32 H 1.08999 * 109.47714 * 120.00380 * 2 1 3 33 33 H 0.97001 * 117.69900 * 184.04367 * 7 5 3 34 34 H 1.08999 * 109.21597 * 98.71937 * 8 7 5 35 35 H 1.09004 * 109.21479 * 218.09094 * 8 7 5 36 36 H 1.09003 * 109.71779 * 166.39837 * 9 8 7 37 37 H 1.09000 * 109.72283 * 287.05373 * 9 8 7 38 38 H 1.08007 * 119.87554 * 359.97438 * 15 14 11 39 39 H 1.08009 * 120.12718 * 180.23062 * 16 15 14 40 40 H 0.96997 * 120.00674 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12893 * 179.97438 * 26 17 16 42 42 H 1.07994 * 119.87146 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6429 1.9700 0.8673 5 6 1.5949 2.1409 -1.2555 6 8 0.4341 2.0408 -1.5922 7 7 2.4187 2.8611 -2.0182 8 6 3.8499 3.0007 -1.7866 9 6 4.1963 2.6911 -0.3291 10 7 3.5095 1.4453 0.0521 11 16 4.3578 0.1022 0.5197 12 8 3.6697 -1.0162 -0.0235 13 8 5.7257 0.3782 0.2520 14 6 4.2093 -0.0249 2.2709 15 6 5.0543 0.7102 3.0880 16 6 4.9442 0.6224 4.4570 17 6 3.9762 -0.2252 5.0266 18 6 3.8568 -0.3268 6.4318 19 1 4.0516 0.5343 7.0540 20 6 3.4861 -1.5430 7.0164 21 7 3.2180 -2.5770 6.2612 22 14 3.3741 -1.6901 8.8753 23 1 3.7236 -0.3874 9.4969 24 1 1.9898 -2.0658 9.2596 25 1 4.3194 -2.7337 9.3471 26 6 3.1274 -0.9705 4.1875 27 6 3.2526 -0.8638 2.8211 28 1 -0.3633 -1.0101 0.1893 29 1 -0.3634 0.6689 0.7800 30 1 -0.3633 0.3409 -0.9694 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0372 3.3277 -2.7783 34 1 4.3876 2.3113 -2.4375 35 1 4.1527 4.0221 -2.0176 36 1 5.2739 2.5632 -0.2264 37 1 3.8596 3.5071 0.3104 38 1 5.7996 1.3567 2.6486 39 1 5.6011 1.1988 5.0917 40 1 2.9614 -3.4202 6.6664 41 1 2.3812 -1.6245 4.6140 42 1 2.6026 -1.4352 2.1751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081300263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:33 Heat of formation + Delta-G solvation = -79.013612 kcal Electronic energy + Delta-G solvation = -28249.552335 eV Core-core repulsion = 24321.561949 eV Total energy + Delta-G solvation = -3927.990386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44952 -37.67775 -37.00692 -36.83726 -35.35718 -34.95178 -34.00399 -32.15963 -30.29226 -29.56677 -29.40521 -26.01006 -25.82308 -24.06021 -22.01128 -21.51643 -21.20336 -19.86615 -18.56752 -17.66275 -17.58020 -17.22782 -16.60189 -16.21170 -15.68436 -15.51185 -15.47828 -14.75567 -14.25325 -14.16205 -13.56286 -13.49058 -13.28299 -13.27692 -12.72399 -12.58063 -12.44544 -12.17193 -12.11404 -11.99893 -11.82742 -11.61244 -11.55374 -11.36570 -11.23766 -11.22195 -10.93030 -10.85530 -10.43192 -10.25948 -9.89967 -9.80988 -9.66838 -9.38778 -9.25815 -8.84101 -7.92708 -7.74420 -7.02133 -4.85922 0.97682 2.15834 2.54934 2.82642 2.87876 2.90406 2.95598 3.05362 3.42123 3.68559 4.24329 4.31946 4.43445 4.54801 4.77792 4.87296 4.95763 5.14899 5.25141 5.30087 5.37245 5.56204 5.65777 5.76014 5.87153 5.94777 6.01057 6.14099 6.29263 6.43805 6.54243 6.59911 6.68435 6.73485 6.75821 6.90515 6.98661 7.18865 7.30649 7.33048 7.57577 7.75436 7.94674 8.13256 8.31130 8.50167 8.59760 9.85659 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.003582 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.512794 B = 7815.948456 C = 8407.921382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.149 3.851 4 H 0.106 0.894 5 C 0.521 3.479 6 O -0.541 6.541 7 N -0.718 5.718 8 C 0.097 3.903 9 C 0.101 3.899 10 N -1.007 6.007 11 S 2.690 3.310 12 O -0.971 6.971 13 O -0.979 6.979 14 C -0.778 4.778 15 C -0.003 4.003 16 C -0.229 4.229 17 C 0.139 3.861 18 C -0.440 4.440 19 H 0.086 0.914 20 C 0.068 3.932 21 N -0.783 5.783 22 Si 0.923 3.077 23 H -0.258 1.258 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.170 4.170 27 C -0.023 4.023 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.287 0.713 41 H 0.133 0.867 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 8.846 -9.089 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.040 3.960 4 H 0.123 0.877 5 C 0.307 3.693 6 O -0.418 6.418 7 N -0.370 5.370 8 C -0.030 4.030 9 C -0.024 4.024 10 N -0.843 5.843 11 S 2.792 3.208 12 O -0.962 6.962 13 O -0.970 6.970 14 C -0.874 4.874 15 C -0.024 4.024 16 C -0.250 4.250 17 C 0.135 3.865 18 C -0.469 4.469 19 H 0.104 0.896 20 C -0.152 4.152 21 N -0.406 5.406 22 Si 0.747 3.253 23 H -0.182 1.182 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.191 4.191 27 C -0.044 4.044 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.675 7.860 -9.671 12.480 hybrid contribution -0.124 0.319 1.285 1.330 sum -0.798 8.179 -8.386 11.741 Atomic orbital electron populations 1.21918 0.94084 1.01328 1.03634 1.22357 0.97756 0.91493 1.06458 1.21187 0.79595 0.99387 0.95806 0.87651 1.20369 0.85520 0.78235 0.85202 1.90698 1.17914 1.61358 1.71841 1.45347 1.09025 1.51233 1.31416 1.21759 0.80986 1.02425 0.97786 1.21761 0.99593 0.87112 0.93981 1.58371 1.14096 1.28688 1.83181 1.01494 0.72113 0.71999 0.75231 1.93564 1.73999 1.49743 1.78857 1.93464 1.32606 1.84779 1.86183 1.29194 1.16657 1.20477 1.21112 1.20117 0.94048 0.94186 0.94005 1.21137 1.02473 1.07690 0.93687 1.17934 0.87176 0.87854 0.93517 1.19924 1.37870 0.96903 0.92168 0.89591 1.26104 0.92007 0.95301 1.01785 1.69756 1.30866 1.02083 1.37935 0.86001 0.78964 0.79728 0.80611 1.18188 1.19443 1.19511 1.21627 1.01813 1.04124 0.91493 1.20435 0.94104 0.93811 0.96011 0.92696 0.92963 0.90309 0.88663 0.88822 0.76780 0.91219 0.89343 0.86629 0.90169 0.88010 0.88028 0.90193 0.84939 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.14 37.16 0.34 -1.90 16 2 C -0.14 -2.28 3.83 -26.73 -0.10 -2.39 16 3 C 0.15 2.16 3.22 -68.92 -0.22 1.94 16 4 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 5 C 0.52 7.21 7.36 -11.75 -0.09 7.13 16 6 O -0.54 -8.74 14.48 5.56 0.08 -8.66 16 7 N -0.72 -7.48 5.42 -61.34 -0.33 -7.81 16 8 C 0.10 0.82 7.34 -4.51 -0.03 0.78 16 9 C 0.10 1.08 6.58 -3.63 -0.02 1.05 16 10 N -1.01 -14.47 3.29 -107.73 -0.35 -14.82 16 11 S 2.69 48.96 5.27 -107.50 -0.57 48.40 16 12 O -0.97 -19.33 12.75 -57.17 -0.73 -20.06 16 13 O -0.98 -19.10 15.88 -57.17 -0.91 -20.01 16 14 C -0.78 -16.24 5.96 -39.29 -0.23 -16.48 16 15 C 0.00 -0.07 9.49 -39.66 -0.38 -0.45 16 16 C -0.23 -5.18 9.80 -38.88 -0.38 -5.56 16 17 C 0.14 3.41 5.55 -106.83 -0.59 2.82 16 18 C -0.44 -10.60 9.05 -37.74 -0.34 -10.94 16 19 H 0.09 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.55 5.40 -17.34 -0.09 1.46 16 21 N -0.78 -18.65 10.62 55.55 0.59 -18.06 16 22 Si 0.92 17.08 29.56 -169.99 -5.02 12.05 16 23 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 24 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 26 C -0.17 -4.13 8.67 -38.87 -0.34 -4.46 16 27 C -0.02 -0.52 8.66 -39.66 -0.34 -0.86 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.08 1.21 5.83 -51.93 -0.30 0.91 16 31 H 0.09 1.63 6.77 -51.93 -0.35 1.28 16 32 H 0.09 1.62 3.55 -51.93 -0.18 1.44 16 33 H 0.40 3.40 8.80 -40.82 -0.36 3.04 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.12 1.19 6.81 -51.93 -0.35 0.84 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.87 7.76 -52.48 -0.41 1.46 16 39 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 41 H 0.13 3.30 6.15 -52.48 -0.32 2.98 16 42 H 0.11 2.26 5.79 -52.49 -0.30 1.96 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -29.95 343.11 -9.99 -39.94 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.09 Total: 11.71 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -2.83 Total: -27.86 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.10 Total: -40.69 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.56 Total: -48.72 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.02 Total: 12.05 kcal Atomic # 16 Polarization: 48.96 SS G_CDS: -0.57 Total: 48.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.95 -9.99 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.071 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds