Wall clock time and date at job start Tue Mar 31 2020 21:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 H 1.09000 * 109.56310 * 57.60905 * 3 2 1 5 5 C 1.50409 * 109.82504 * 297.45832 * 3 2 1 6 6 O 1.21276 * 118.46247 * 47.51678 * 5 3 2 7 7 N 1.33376 * 123.04260 * 227.77098 * 5 3 2 8 8 C 1.45651 * 124.59354 * 3.76104 * 7 5 3 9 9 C 1.52978 * 110.77073 * 338.38187 * 8 7 5 10 10 N 1.47045 * 109.56862 * 177.84346 * 3 2 1 11 11 S 1.65596 * 121.35815 * 342.70897 * 10 3 2 12 12 O 1.42100 * 106.40197 * 37.95324 * 11 10 3 13 13 O 1.42096 * 106.40546 * 170.88026 * 11 10 3 14 14 C 1.76205 * 107.21460 * 284.41920 * 11 10 3 15 15 C 1.38636 * 119.74866 * 276.80303 * 14 11 10 16 16 C 1.37613 * 120.24889 * 179.76721 * 15 14 11 17 17 C 1.40711 * 119.74732 * 0.48455 * 16 15 14 18 18 C 1.41391 * 120.24702 * 179.79237 * 17 16 15 19 19 H 1.08000 * 119.99963 * 33.62267 * 18 17 16 20 20 C 1.39945 * 119.99988 * 213.62203 * 18 17 16 21 21 N 1.30821 * 120.00403 * 358.31209 * 20 18 17 22 22 Si 1.86805 * 120.00075 * 178.31378 * 20 18 17 23 23 H 1.48506 * 109.47009 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47121 * 120.00069 * 22 20 18 25 25 H 1.48502 * 109.47200 * 240.00158 * 22 20 18 26 26 C 1.40716 * 119.51023 * 359.76768 * 17 16 15 27 27 C 1.37624 * 119.74316 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.46842 * 190.61544 * 1 2 3 29 29 H 1.08992 * 109.47391 * 310.61694 * 1 2 3 30 30 H 1.08997 * 109.47005 * 70.62424 * 1 2 3 31 31 H 1.08999 * 109.47406 * 240.00594 * 2 1 3 32 32 H 1.08999 * 109.47714 * 120.00380 * 2 1 3 33 33 H 0.97001 * 117.69900 * 184.04367 * 7 5 3 34 34 H 1.08999 * 109.21597 * 98.71937 * 8 7 5 35 35 H 1.09004 * 109.21479 * 218.09094 * 8 7 5 36 36 H 1.09003 * 109.71779 * 166.39837 * 9 8 7 37 37 H 1.09000 * 109.72283 * 287.05373 * 9 8 7 38 38 H 1.08007 * 119.87554 * 359.97438 * 15 14 11 39 39 H 1.08009 * 120.12718 * 180.23062 * 16 15 14 40 40 H 0.96997 * 120.00674 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12893 * 179.97438 * 26 17 16 42 42 H 1.07994 * 119.87146 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6429 1.9700 0.8673 5 6 1.5949 2.1409 -1.2555 6 8 0.4341 2.0408 -1.5922 7 7 2.4187 2.8611 -2.0182 8 6 3.8499 3.0007 -1.7866 9 6 4.1963 2.6911 -0.3291 10 7 3.5095 1.4453 0.0521 11 16 4.3578 0.1022 0.5197 12 8 3.6697 -1.0162 -0.0235 13 8 5.7257 0.3782 0.2520 14 6 4.2093 -0.0249 2.2709 15 6 5.0543 0.7102 3.0880 16 6 4.9442 0.6224 4.4570 17 6 3.9762 -0.2252 5.0266 18 6 3.8568 -0.3268 6.4318 19 1 4.0516 0.5343 7.0540 20 6 3.4861 -1.5430 7.0164 21 7 3.2180 -2.5770 6.2612 22 14 3.3741 -1.6901 8.8753 23 1 3.7236 -0.3874 9.4969 24 1 1.9898 -2.0658 9.2596 25 1 4.3194 -2.7337 9.3471 26 6 3.1274 -0.9705 4.1875 27 6 3.2526 -0.8638 2.8211 28 1 -0.3633 -1.0101 0.1893 29 1 -0.3634 0.6689 0.7800 30 1 -0.3633 0.3409 -0.9694 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0372 3.3277 -2.7783 34 1 4.3876 2.3113 -2.4375 35 1 4.1527 4.0221 -2.0176 36 1 5.2739 2.5632 -0.2264 37 1 3.8596 3.5071 0.3104 38 1 5.7996 1.3567 2.6486 39 1 5.6011 1.1988 5.0917 40 1 2.9614 -3.4202 6.6664 41 1 2.3812 -1.6245 4.6140 42 1 2.6026 -1.4352 2.1751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081300263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:32 Heat of formation + Delta-G solvation = -99.819414 kcal Electronic energy + Delta-G solvation = -28250.454542 eV Core-core repulsion = 24321.561949 eV Total energy + Delta-G solvation = -3928.892593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49720 -39.41555 -38.48654 -37.91674 -36.86120 -36.07956 -35.71364 -33.29962 -32.04057 -31.30514 -30.38418 -27.62350 -27.06396 -25.06219 -23.25996 -23.22895 -22.83463 -20.98705 -19.83962 -19.41310 -18.85330 -18.40091 -17.97468 -17.36491 -17.19716 -16.84067 -16.50327 -16.09822 -15.86089 -15.27363 -15.15923 -14.94361 -14.63620 -14.40902 -14.14352 -13.88810 -13.73468 -13.69170 -13.59812 -13.36792 -13.11622 -13.01918 -12.94074 -12.85920 -12.74307 -12.58595 -12.38329 -12.10073 -11.94695 -11.64103 -11.56050 -11.41204 -11.20038 -10.80521 -10.18577 -9.94184 -9.67228 -9.51769 -8.72457 -6.67113 -0.47692 0.45038 1.04301 1.37657 1.41454 1.48450 1.53463 1.93864 2.14075 2.29716 2.57304 2.84900 3.34878 3.42177 3.50309 3.60322 3.87922 4.02875 4.13630 4.21342 4.29934 4.34469 4.51532 4.56227 4.62192 4.80723 4.87998 4.88561 4.95940 5.00611 5.11355 5.15356 5.23697 5.28252 5.33800 5.51271 5.55718 5.57675 5.77150 5.87925 5.98105 6.17891 6.23535 6.53146 6.72374 6.81517 7.15896 8.18383 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.003582 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.512794 B = 7815.948456 C = 8407.921382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 H 0.114 0.886 5 C 0.521 3.479 6 O -0.570 6.570 7 N -0.705 5.705 8 C 0.094 3.906 9 C 0.086 3.914 10 N -1.000 6.000 11 S 2.719 3.281 12 O -0.990 6.990 13 O -0.988 6.988 14 C -0.785 4.785 15 C -0.005 4.005 16 C -0.245 4.245 17 C 0.111 3.889 18 C -0.473 4.473 19 H 0.090 0.910 20 C 0.028 3.972 21 N -0.819 5.819 22 Si 0.996 3.004 23 H -0.253 1.253 24 H -0.263 1.263 25 H -0.267 1.267 26 C -0.196 4.196 27 C -0.026 4.026 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.293 0.707 41 H 0.116 0.884 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 10.876 -10.008 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.039 3.961 4 H 0.132 0.868 5 C 0.306 3.694 6 O -0.449 6.449 7 N -0.356 5.356 8 C -0.031 4.031 9 C -0.038 4.038 10 N -0.839 5.839 11 S 2.817 3.183 12 O -0.980 6.980 13 O -0.979 6.979 14 C -0.878 4.878 15 C -0.024 4.024 16 C -0.265 4.265 17 C 0.107 3.893 18 C -0.501 4.501 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.443 5.443 22 Si 0.815 3.185 23 H -0.176 1.176 24 H -0.188 1.188 25 H -0.191 1.191 26 C -0.216 4.216 27 C -0.046 4.046 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.147 9.910 -10.580 14.497 hybrid contribution -0.321 -0.229 1.343 1.399 sum -0.174 9.681 -9.237 13.382 Atomic orbital electron populations 1.21863 0.93289 1.01723 1.03551 1.22286 0.98566 0.92541 1.04958 1.21188 0.79324 0.98550 0.97065 0.86833 1.20136 0.85494 0.78614 0.85194 1.90692 1.19147 1.62654 1.72431 1.45275 1.09660 1.49813 1.30877 1.22003 0.79494 1.05397 0.96170 1.22231 0.99812 0.85741 0.95995 1.58006 1.14068 1.29299 1.82554 1.00676 0.71769 0.72250 0.73630 1.93552 1.74357 1.51644 1.78459 1.93447 1.33495 1.85170 1.85752 1.29771 1.15317 1.19168 1.23562 1.20474 0.94295 0.94134 0.93528 1.21384 1.02477 1.07804 0.94819 1.18281 0.87988 0.88748 0.94244 1.20191 1.39711 0.97855 0.92383 0.89144 1.26989 0.90985 0.94467 1.06342 1.69826 1.31808 1.02764 1.39938 0.84939 0.79069 0.79770 0.74680 1.17572 1.18792 1.19144 1.21606 1.02399 1.05069 0.92548 1.20596 0.94575 0.93968 0.95446 0.92309 0.92446 0.90711 0.89933 0.90429 0.75320 0.90793 0.84638 0.85956 0.87912 0.85012 0.86673 0.89591 0.86581 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.14 71.98 0.66 -3.66 16 2 C -0.14 -4.63 3.83 30.59 0.12 -4.51 16 3 C 0.15 4.07 3.22 44.05 0.14 4.21 16 4 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 5 C 0.52 13.35 7.36 87.78 0.65 13.99 16 6 O -0.57 -17.66 14.48 -3.02 -0.04 -17.70 16 7 N -0.70 -12.28 5.42 -467.14 -2.53 -14.81 16 8 C 0.09 1.18 7.34 86.53 0.63 1.81 16 9 C 0.09 1.51 6.58 86.22 0.57 2.08 16 10 N -1.00 -26.55 3.29 -494.74 -1.63 -28.18 16 11 S 2.72 95.43 5.27 -56.49 -0.30 95.13 16 12 O -0.99 -39.03 12.75 -128.00 -1.63 -40.66 16 13 O -0.99 -36.38 15.88 -128.00 -2.03 -38.41 16 14 C -0.79 -32.54 5.96 22.46 0.13 -32.41 16 15 C 0.00 -0.19 9.49 22.22 0.21 0.02 16 16 C -0.24 -11.12 9.80 22.73 0.22 -10.90 16 17 C 0.11 5.62 5.55 -21.29 -0.12 5.50 16 18 C -0.47 -23.47 9.05 23.46 0.21 -23.26 16 19 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 20 C 0.03 1.32 5.40 85.26 0.46 1.78 16 21 N -0.82 -40.48 10.62 21.83 0.23 -40.25 16 22 Si 1.00 35.27 29.56 68.60 2.03 37.30 16 23 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 24 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 25 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 26 C -0.20 -9.92 8.67 22.73 0.20 -9.73 16 27 C -0.03 -1.19 8.66 22.22 0.19 -1.00 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.60 8.11 -2.39 -0.02 1.58 16 30 H 0.07 2.29 5.83 -2.39 -0.01 2.27 16 31 H 0.08 2.82 6.77 -2.39 -0.02 2.81 16 32 H 0.08 2.72 3.55 -2.39 -0.01 2.71 16 33 H 0.41 5.55 8.80 -92.71 -0.82 4.74 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.14 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.12 2.04 6.81 -2.39 -0.02 2.03 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 4.53 7.76 -2.91 -0.02 4.51 16 39 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 41 H 0.12 6.16 6.15 -2.91 -0.02 6.14 16 42 H 0.12 5.04 5.79 -2.91 -0.02 5.02 16 Total: -1.00 -66.58 343.11 -1.37 -67.95 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.26 Total: 35.69 kcal Atomic # 6 Polarization: -60.34 SS G_CDS: 4.28 Total: -56.06 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -3.93 Total: -83.24 kcal Atomic # 8 Polarization: -93.06 SS G_CDS: -3.71 Total: -96.77 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 95.43 SS G_CDS: -0.30 Total: 95.13 kcal Total: -66.58 -1.37 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.872 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds