Wall clock time and date at job start Tue Mar 31 2020 21:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46505 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.36931 * 120.00285 * 73.09093 * 4 3 2 6 6 H 1.08001 * 120.00030 * 207.86948 * 5 4 3 7 7 C 1.38816 * 119.99796 * 27.60231 * 5 4 3 8 8 N 1.31614 * 120.00048 * 27.72357 * 7 5 4 9 9 Si 1.86802 * 119.99710 * 207.71973 * 7 5 4 10 10 H 1.48499 * 109.46815 * 60.00116 * 9 7 5 11 11 H 1.48497 * 109.46784 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47208 * 299.99811 * 9 7 5 13 13 S 1.65604 * 119.99402 * 253.09461 * 4 3 2 14 14 O 1.42099 * 106.40518 * 23.53886 * 13 4 3 15 15 O 1.42100 * 106.39754 * 156.46180 * 13 4 3 16 16 C 1.76204 * 107.21558 * 269.99603 * 13 4 3 17 17 C 1.38377 * 119.91265 * 269.72457 * 16 13 4 18 18 C 1.38438 * 120.44234 * 179.78689 * 17 16 13 19 19 C 1.37770 * 119.93520 * 0.49916 * 18 17 16 20 20 C 1.39706 * 119.83767 * 359.74943 * 19 18 17 21 21 C 1.38088 * 119.90585 * 90.00412 * 16 13 4 22 22 C 1.47879 * 118.79038 * 180.02562 * 20 19 18 23 23 O 1.21550 * 120.45244 * 197.66219 * 22 20 19 24 24 N 1.34823 * 119.09714 * 17.63729 * 22 20 19 25 25 C 1.46042 * 121.16849 * 2.78494 * 24 22 20 26 26 C 1.50546 * 120.95326 * 179.69747 * 19 18 17 27 27 H 1.08998 * 109.47553 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47193 * 299.99787 * 1 2 3 29 29 H 1.08996 * 109.47334 * 59.99645 * 1 2 3 30 30 H 1.09007 * 109.46881 * 239.99765 * 2 1 3 31 31 H 1.08996 * 109.47334 * 120.00355 * 2 1 3 32 32 H 1.08993 * 109.47391 * 60.00199 * 3 2 1 33 33 H 1.09004 * 109.46995 * 300.00185 * 3 2 1 34 34 H 0.96997 * 120.00118 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.77533 * 0.02562 * 17 16 13 36 36 H 1.07998 * 120.03639 * 180.26610 * 18 17 16 37 37 H 1.08003 * 120.21969 * 359.94000 * 21 16 13 38 38 H 0.96993 * 119.41925 * 182.80948 * 24 22 20 39 39 H 1.08998 * 109.16119 * 82.65294 * 25 24 22 40 40 H 1.08996 * 109.15904 * 201.89995 * 25 24 22 41 41 H 1.09001 * 109.39440 * 25.94310 * 26 19 18 42 42 H 1.09002 * 109.31956 * 266.17860 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1892 1.0976 -1.1355 6 1 5.1753 0.6635 -1.0607 7 6 3.6131 1.3010 -2.3820 8 7 2.7289 2.2614 -2.5495 9 14 4.0930 0.2116 -3.8216 10 1 3.7681 -1.2018 -3.5025 11 1 3.3412 0.6308 -5.0316 12 1 5.5506 0.3395 -4.0749 13 16 4.3335 1.8592 1.3714 14 8 3.4522 1.6209 2.4603 15 8 5.6163 1.2576 1.2637 16 6 4.5943 3.6009 1.3142 17 6 5.7378 4.1083 0.7227 18 6 5.9518 5.4750 0.6678 19 6 5.0271 6.3381 1.2138 20 6 3.8735 5.8305 1.8166 21 6 3.6599 4.4554 1.8649 22 6 2.8962 6.7778 2.3947 23 8 2.0628 6.3934 3.1916 24 7 2.9425 8.0739 2.0262 25 6 3.8981 8.5415 1.0256 26 6 5.2399 7.8279 1.1729 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 2.3261 2.4033 -3.4204 35 1 6.4663 3.4338 0.2977 36 1 6.8445 5.8640 0.2008 37 1 2.7689 4.0599 2.3298 38 1 2.3306 8.7070 2.4330 39 1 3.4974 8.3483 0.0305 40 1 4.0487 9.6140 1.1486 41 1 5.8784 8.0792 0.3260 42 1 5.7211 8.1489 2.0967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092368132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:48 Heat of formation + Delta-G solvation = -87.138429 kcal Electronic energy + Delta-G solvation = -28081.251273 eV Core-core repulsion = 24152.908569 eV Total energy + Delta-G solvation = -3928.342704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.44802 -37.90492 -36.41395 -36.06561 -35.82418 -34.40658 -32.68726 -32.03967 -31.15450 -30.79231 -29.01204 -26.06432 -24.19291 -23.83360 -23.79732 -21.54048 -20.61782 -19.69220 -18.41393 -17.74219 -17.25990 -16.81615 -16.37001 -15.93483 -15.52535 -15.07874 -14.84923 -14.59554 -14.20094 -14.06479 -13.84125 -13.50546 -13.38323 -13.29609 -13.04044 -12.85057 -12.38560 -11.94350 -11.91519 -11.72797 -11.61098 -11.38870 -11.19837 -11.07120 -10.95601 -10.70423 -10.68319 -10.60671 -10.46443 -10.12136 -10.01382 -9.73670 -9.63424 -9.39174 -9.21872 -8.70222 -8.64608 -7.96269 -6.64825 -4.13789 1.01473 1.46386 1.78495 2.92930 3.05620 3.10694 3.17819 3.20966 3.87718 3.98232 4.41736 4.50128 4.59134 4.63649 4.66392 4.98829 5.06504 5.09208 5.21085 5.40551 5.60747 5.65476 5.69314 5.81229 5.83001 5.87640 5.99446 6.05720 6.22934 6.27676 6.42998 6.54120 6.55903 6.62876 6.68384 6.77850 6.79474 6.88046 7.12135 7.13731 7.20415 7.28985 7.52261 8.20420 8.24843 8.60203 9.06901 10.25330 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.004477 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.987091 B = 6252.877537 C = 6690.152078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.112 3.888 4 N -0.795 5.795 5 C -0.239 4.239 6 H 0.115 0.885 7 C 0.038 3.962 8 N -0.815 5.815 9 Si 0.923 3.077 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.266 1.266 13 S 2.519 3.481 14 O -0.999 6.999 15 O -0.986 6.986 16 C -0.660 4.660 17 C 0.008 3.992 18 C -0.150 4.150 19 C -0.029 4.029 20 C -0.169 4.169 21 C 0.033 3.967 22 C 0.570 3.430 23 O -0.535 6.535 24 N -0.731 5.731 25 C 0.116 3.884 26 C -0.102 4.102 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.277 0.723 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.402 0.598 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 10.079 -0.917 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.014 4.014 4 N -0.617 5.617 5 C -0.389 4.389 6 H 0.132 0.868 7 C -0.177 4.177 8 N -0.452 5.452 9 Si 0.747 3.253 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.191 1.191 13 S 2.619 3.381 14 O -0.989 6.989 15 O -0.975 6.975 16 C -0.737 4.737 17 C -0.011 4.011 18 C -0.168 4.168 19 C -0.030 4.030 20 C -0.173 4.173 21 C 0.013 3.987 22 C 0.359 3.641 23 O -0.412 6.412 24 N -0.384 5.384 25 C -0.009 4.009 26 C -0.140 4.140 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.238 0.762 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.615 9.466 0.276 9.606 hybrid contribution 0.056 0.879 -0.873 1.240 sum 1.672 10.344 -0.597 10.495 Atomic orbital electron populations 1.21690 0.96604 1.00655 1.01426 1.21710 0.94333 0.98449 1.02055 1.21584 0.79535 0.96599 1.03676 1.54155 1.12347 1.66992 1.28235 1.19894 1.04571 1.31225 0.83199 0.86754 1.25732 0.97040 0.95726 0.99156 1.69968 1.25376 1.24880 1.25007 0.86034 0.79389 0.80690 0.79138 1.19134 1.20610 1.19101 1.11982 0.74022 0.74904 0.77148 1.93357 1.65243 1.85099 1.55158 1.93336 1.41766 1.75203 1.87239 1.32584 1.00947 1.32212 1.07948 1.21103 0.94353 0.95154 0.90497 1.20979 0.99697 0.93547 1.02624 1.19988 0.93592 0.95030 0.94355 1.19692 0.96828 0.94311 1.06453 1.20840 0.96895 0.90896 0.90026 1.18330 0.83207 0.82106 0.80491 1.90804 1.38072 1.77692 1.34664 1.45680 1.39300 1.09274 1.44196 1.21270 0.88626 0.98653 0.92331 1.20861 0.97683 0.91333 1.04098 0.93448 0.93113 0.92898 0.91418 0.92761 0.92452 0.87395 0.91265 0.84317 0.85346 0.84144 0.76210 0.91353 0.89484 0.88485 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 37.15 0.37 -2.01 16 2 C -0.13 -2.48 6.08 -26.74 -0.16 -2.64 16 3 C 0.11 2.47 5.06 -4.04 -0.02 2.45 16 4 N -0.79 -18.68 2.94 -59.91 -0.18 -18.85 16 5 C -0.24 -5.66 8.89 -15.06 -0.13 -5.79 16 6 H 0.12 2.71 7.34 -52.49 -0.39 2.32 16 7 C 0.04 0.86 4.98 -17.43 -0.09 0.77 16 8 N -0.81 -18.78 11.14 55.49 0.62 -18.16 16 9 Si 0.92 17.66 29.63 -169.99 -5.04 12.63 16 10 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 11 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 13 S 2.52 60.08 5.61 -107.50 -0.60 59.48 16 14 O -1.00 -25.49 16.03 -57.17 -0.92 -26.41 16 15 O -0.99 -25.10 16.09 -57.17 -0.92 -26.02 16 16 C -0.66 -14.29 5.97 -39.58 -0.24 -14.53 16 17 C 0.01 0.16 9.51 -39.46 -0.38 -0.22 16 18 C -0.15 -2.35 9.73 -39.68 -0.39 -2.74 16 19 C -0.03 -0.44 5.68 -104.32 -0.59 -1.03 16 20 C -0.17 -3.12 5.78 -105.03 -0.61 -3.73 16 21 C 0.03 0.70 9.11 -39.27 -0.36 0.35 16 22 C 0.57 9.91 7.79 -12.29 -0.10 9.82 16 23 O -0.54 -11.12 17.46 5.32 0.09 -11.03 16 24 N -0.73 -8.91 5.58 -61.70 -0.34 -9.26 16 25 C 0.12 1.04 7.03 -4.45 -0.03 1.01 16 26 C -0.10 -1.02 6.04 -28.12 -0.17 -1.19 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.36 7.98 -51.93 -0.41 0.94 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.24 7.22 -51.93 -0.37 0.87 16 33 H 0.11 2.46 5.36 -51.93 -0.28 2.18 16 34 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 35 H 0.14 2.56 7.59 -52.49 -0.40 2.17 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.14 3.09 7.41 -52.48 -0.39 2.70 16 38 H 0.40 4.00 8.92 -40.82 -0.36 3.64 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.45 360.64 -10.28 -41.73 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.54 Total: 9.93 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.89 Total: -19.47 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.10 Total: -46.27 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -1.74 Total: -63.45 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.04 Total: 12.63 kcal Atomic # 16 Polarization: 60.08 SS G_CDS: -0.60 Total: 59.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.45 -10.28 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.409 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds