Wall clock time and date at job start Tue Mar 31 2020 21:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46505 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.36931 * 120.00285 * 73.09093 * 4 3 2 6 6 H 1.08001 * 120.00030 * 207.86948 * 5 4 3 7 7 C 1.38816 * 119.99796 * 27.60231 * 5 4 3 8 8 N 1.31614 * 120.00048 * 27.72357 * 7 5 4 9 9 Si 1.86802 * 119.99710 * 207.71973 * 7 5 4 10 10 H 1.48499 * 109.46815 * 60.00116 * 9 7 5 11 11 H 1.48497 * 109.46784 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47208 * 299.99811 * 9 7 5 13 13 S 1.65604 * 119.99402 * 253.09461 * 4 3 2 14 14 O 1.42099 * 106.40518 * 23.53886 * 13 4 3 15 15 O 1.42100 * 106.39754 * 156.46180 * 13 4 3 16 16 C 1.76204 * 107.21558 * 269.99603 * 13 4 3 17 17 C 1.38377 * 119.91265 * 269.72457 * 16 13 4 18 18 C 1.38438 * 120.44234 * 179.78689 * 17 16 13 19 19 C 1.37770 * 119.93520 * 0.49916 * 18 17 16 20 20 C 1.39706 * 119.83767 * 359.74943 * 19 18 17 21 21 C 1.38088 * 119.90585 * 90.00412 * 16 13 4 22 22 C 1.47879 * 118.79038 * 180.02562 * 20 19 18 23 23 O 1.21550 * 120.45244 * 197.66219 * 22 20 19 24 24 N 1.34823 * 119.09714 * 17.63729 * 22 20 19 25 25 C 1.46042 * 121.16849 * 2.78494 * 24 22 20 26 26 C 1.50546 * 120.95326 * 179.69747 * 19 18 17 27 27 H 1.08998 * 109.47553 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47193 * 299.99787 * 1 2 3 29 29 H 1.08996 * 109.47334 * 59.99645 * 1 2 3 30 30 H 1.09007 * 109.46881 * 239.99765 * 2 1 3 31 31 H 1.08996 * 109.47334 * 120.00355 * 2 1 3 32 32 H 1.08993 * 109.47391 * 60.00199 * 3 2 1 33 33 H 1.09004 * 109.46995 * 300.00185 * 3 2 1 34 34 H 0.96997 * 120.00118 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.77533 * 0.02562 * 17 16 13 36 36 H 1.07998 * 120.03639 * 180.26610 * 18 17 16 37 37 H 1.08003 * 120.21969 * 359.94000 * 21 16 13 38 38 H 0.96993 * 119.41925 * 182.80948 * 24 22 20 39 39 H 1.08998 * 109.16119 * 82.65294 * 25 24 22 40 40 H 1.08996 * 109.15904 * 201.89995 * 25 24 22 41 41 H 1.09001 * 109.39440 * 25.94310 * 26 19 18 42 42 H 1.09002 * 109.31956 * 266.17860 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1892 1.0976 -1.1355 6 1 5.1753 0.6635 -1.0607 7 6 3.6131 1.3010 -2.3820 8 7 2.7289 2.2614 -2.5495 9 14 4.0930 0.2116 -3.8216 10 1 3.7681 -1.2018 -3.5025 11 1 3.3412 0.6308 -5.0316 12 1 5.5506 0.3395 -4.0749 13 16 4.3335 1.8592 1.3714 14 8 3.4522 1.6209 2.4603 15 8 5.6163 1.2576 1.2637 16 6 4.5943 3.6009 1.3142 17 6 5.7378 4.1083 0.7227 18 6 5.9518 5.4750 0.6678 19 6 5.0271 6.3381 1.2138 20 6 3.8735 5.8305 1.8166 21 6 3.6599 4.4554 1.8649 22 6 2.8962 6.7778 2.3947 23 8 2.0628 6.3934 3.1916 24 7 2.9425 8.0739 2.0262 25 6 3.8981 8.5415 1.0256 26 6 5.2399 7.8279 1.1729 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 2.3261 2.4033 -3.4204 35 1 6.4663 3.4338 0.2977 36 1 6.8445 5.8640 0.2008 37 1 2.7689 4.0599 2.3298 38 1 2.3306 8.7070 2.4330 39 1 3.4974 8.3483 0.0305 40 1 4.0487 9.6140 1.1486 41 1 5.8784 8.0792 0.3260 42 1 5.7211 8.1489 2.0967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092368132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:47 Heat of formation + Delta-G solvation = -109.828579 kcal Electronic energy + Delta-G solvation = -28082.235192 eV Core-core repulsion = 24152.908569 eV Total energy + Delta-G solvation = -3929.326623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70831 -39.28856 -38.17598 -37.76247 -37.19616 -36.35979 -34.35846 -33.25994 -32.87075 -32.19320 -30.13325 -27.77280 -25.59559 -25.28274 -25.09941 -22.82477 -22.25254 -21.02444 -20.11003 -19.24191 -18.60920 -18.41535 -18.16091 -17.11967 -16.90929 -16.72366 -16.35895 -16.14924 -15.71584 -15.44871 -15.28869 -15.09669 -14.77779 -14.56800 -14.34959 -14.16626 -13.62767 -13.47990 -13.42756 -13.30515 -12.97577 -12.90119 -12.72419 -12.59563 -12.58212 -12.35255 -12.32380 -12.23510 -12.10618 -11.79734 -11.59009 -11.38689 -11.17455 -11.05092 -10.38221 -10.09790 -9.95681 -9.72863 -8.40497 -5.97697 -0.38840 -0.09206 0.07640 1.51447 1.56156 1.57735 1.66165 2.15086 2.26764 2.50724 2.70851 2.88260 3.24285 3.38016 3.57000 3.63484 3.79228 3.95311 4.19326 4.21267 4.31449 4.34531 4.39916 4.45490 4.53911 4.63987 4.64904 4.77885 4.85114 4.98704 5.03054 5.06956 5.10677 5.19182 5.22745 5.23147 5.24727 5.38966 5.61763 5.71691 5.73482 5.88329 6.01869 6.39302 6.78743 7.05137 7.26576 8.50847 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.004477 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.987091 B = 6252.877537 C = 6690.152078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.112 3.888 4 N -0.801 5.801 5 C -0.258 4.258 6 H 0.107 0.893 7 C 0.014 3.986 8 N -0.832 5.832 9 Si 0.983 3.017 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.261 1.261 13 S 2.512 3.488 14 O -1.030 7.030 15 O -1.012 7.012 16 C -0.685 4.685 17 C -0.012 4.012 18 C -0.139 4.139 19 C -0.014 4.014 20 C -0.186 4.186 21 C 0.004 3.996 22 C 0.563 3.437 23 O -0.585 6.585 24 N -0.710 5.710 25 C 0.107 3.893 26 C -0.101 4.101 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.285 0.715 35 H 0.138 0.862 36 H 0.179 0.821 37 H 0.111 0.889 38 H 0.415 0.585 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 12.992 -3.278 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.014 4.014 4 N -0.622 5.622 5 C -0.408 4.408 6 H 0.125 0.875 7 C -0.200 4.200 8 N -0.469 5.469 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.185 1.185 13 S 2.618 3.382 14 O -1.020 7.020 15 O -1.002 7.002 16 C -0.766 4.766 17 C -0.031 4.031 18 C -0.157 4.157 19 C -0.015 4.015 20 C -0.189 4.189 21 C -0.016 4.016 22 C 0.351 3.649 23 O -0.467 6.467 24 N -0.362 5.362 25 C -0.016 4.016 26 C -0.137 4.137 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.196 0.804 37 H 0.130 0.870 38 H 0.253 0.747 39 H 0.089 0.911 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.747 12.404 -2.082 12.874 hybrid contribution -0.255 0.156 -0.180 0.349 sum 2.492 12.560 -2.262 13.003 Atomic orbital electron populations 1.21653 0.93783 1.02446 1.01841 1.21704 0.96816 0.96575 1.01294 1.21651 0.78995 0.98030 1.02727 1.54217 1.12696 1.67185 1.28136 1.20064 1.04957 1.31905 0.83893 0.87526 1.26452 0.96538 0.96274 1.00712 1.70013 1.25392 1.25487 1.25997 0.85136 0.79380 0.78805 0.76229 1.19014 1.19540 1.18538 1.12225 0.73348 0.75572 0.77086 1.93286 1.65871 1.86104 1.56715 1.93267 1.42820 1.76528 1.87548 1.32110 1.02894 1.30877 1.10686 1.21324 0.93531 0.97395 0.90846 1.21496 1.01100 0.91770 1.01331 1.20675 0.91222 0.98489 0.91086 1.19975 0.98703 0.93346 1.06911 1.20700 0.96420 0.92826 0.91645 1.18347 0.82596 0.83714 0.80245 1.90773 1.39872 1.78956 1.37073 1.45644 1.39543 1.07329 1.43704 1.21703 0.87214 1.01404 0.91283 1.21122 0.99055 0.86648 1.06919 0.90947 0.92922 0.92273 0.91767 0.93826 0.93499 0.88039 0.90473 0.84451 0.80407 0.87048 0.74694 0.91087 0.84226 0.84386 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.91 71.98 0.71 -3.81 16 2 C -0.12 -5.06 6.08 30.59 0.19 -4.88 16 3 C 0.11 5.20 5.06 86.38 0.44 5.64 16 4 N -0.80 -39.76 2.94 -343.45 -1.01 -40.77 16 5 C -0.26 -12.57 8.89 84.04 0.75 -11.82 16 6 H 0.11 5.26 7.34 -2.91 -0.02 5.24 16 7 C 0.01 0.63 4.98 84.86 0.42 1.05 16 8 N -0.83 -38.34 11.14 21.65 0.24 -38.10 16 9 Si 0.98 35.39 29.63 68.60 2.03 37.42 16 10 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 11 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 12 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 13 S 2.51 128.93 5.61 -56.49 -0.32 128.61 16 14 O -1.03 -57.26 16.03 -128.00 -2.05 -59.31 16 15 O -1.01 -54.84 16.09 -128.00 -2.06 -56.90 16 16 C -0.69 -31.50 5.97 22.27 0.13 -31.37 16 17 C -0.01 -0.45 9.51 22.35 0.21 -0.24 16 18 C -0.14 -4.00 9.73 22.21 0.22 -3.78 16 19 C -0.01 -0.38 5.68 -19.67 -0.11 -0.49 16 20 C -0.19 -6.90 5.78 -20.13 -0.12 -7.02 16 21 C 0.00 0.20 9.11 22.47 0.20 0.40 16 22 C 0.56 19.59 7.79 86.79 0.68 20.27 16 23 O -0.59 -25.48 17.46 -3.87 -0.07 -25.55 16 24 N -0.71 -15.38 5.58 -467.38 -2.61 -17.99 16 25 C 0.11 1.36 7.03 86.36 0.61 1.97 16 26 C -0.10 -1.43 6.04 29.70 0.18 -1.26 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.62 7.98 -2.38 -0.02 2.60 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.22 7.22 -2.39 -0.02 2.20 16 33 H 0.10 4.82 5.36 -2.39 -0.01 4.81 16 34 H 0.28 12.06 8.31 -92.71 -0.77 11.29 16 35 H 0.14 5.23 7.59 -2.91 -0.02 5.21 16 36 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.11 5.52 7.41 -2.91 -0.02 5.50 16 38 H 0.42 7.11 8.92 -92.71 -0.83 6.29 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.14 1.00 8.08 -2.39 -0.02 0.98 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.35 360.64 -1.10 -76.46 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.23 Total: 31.46 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 4.51 Total: -35.34 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -3.38 Total: -96.86 kcal Atomic # 8 Polarization: -137.57 SS G_CDS: -4.18 Total: -141.75 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Atomic # 16 Polarization: 128.93 SS G_CDS: -0.32 Total: 128.61 kcal Total: -75.35 -1.10 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.372 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds