Wall clock time and date at job start Tue Mar 31 2020 20:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 108.90475 * 2 1 4 4 C 1.34771 * 120.00333 * 59.29614 * 3 2 1 5 5 O 1.21582 * 119.99659 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00396 * 180.02562 * 4 3 2 7 7 C 1.39243 * 120.00361 * 185.14740 * 6 4 3 8 8 C 1.39481 * 119.83580 * 214.20559 * 7 6 4 9 9 C 1.36378 * 120.16806 * 179.75540 * 8 7 6 10 10 C 1.40865 * 119.82852 * 0.51903 * 9 8 7 11 11 C 1.41156 * 120.16529 * 179.76153 * 10 9 8 12 12 H 1.07995 * 119.99967 * 205.33804 * 11 10 9 13 13 C 1.39896 * 119.99748 * 25.33380 * 11 10 9 14 14 N 1.30878 * 119.99957 * 16.83931 * 13 11 10 15 15 Si 1.86797 * 119.99808 * 196.83592 * 13 11 10 16 16 H 1.48498 * 109.47378 * 90.00601 * 15 13 11 17 17 H 1.48507 * 109.47031 * 210.00345 * 15 13 11 18 18 H 1.48501 * 109.47322 * 329.99785 * 15 13 11 19 19 C 1.40874 * 119.67356 * 359.73521 * 10 9 8 20 20 C 1.36377 * 119.82727 * 0.02562 * 19 10 9 21 21 C 1.52977 * 108.92934 * 118.68379 * 2 1 3 22 22 C 1.54950 * 108.74631 * 90.56387 * 21 2 1 23 23 S 1.83845 * 101.10457 * 42.03190 * 22 21 2 24 24 O 1.42099 * 109.61373 * 210.98328 * 23 22 21 25 25 O 1.42102 * 109.61349 * 77.03168 * 23 22 21 26 26 C 1.53622 * 108.93147 * 241.31243 * 2 1 3 27 27 H 1.09010 * 109.46843 * 60.69800 * 1 2 3 28 28 H 1.08991 * 109.47732 * 180.70185 * 1 2 3 29 29 H 1.09004 * 109.46934 * 300.70541 * 1 2 3 30 30 H 0.97008 * 119.99676 * 239.30216 * 3 2 1 31 31 H 0.97005 * 120.00073 * 5.14235 * 6 4 3 32 32 H 1.08000 * 119.91260 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.08183 * 180.22992 * 9 8 7 34 34 H 0.97004 * 120.00078 * 179.97438 * 14 13 11 35 35 H 1.07993 * 120.08489 * 179.97438 * 19 10 9 36 36 H 1.07993 * 119.91720 * 180.02562 * 20 19 10 37 37 H 1.09003 * 109.64947 * 210.51038 * 21 2 1 38 38 H 1.09000 * 109.65322 * 330.82842 * 21 2 1 39 39 H 1.08998 * 111.17083 * 284.05933 * 22 21 2 40 40 H 1.08999 * 111.09463 * 159.97743 * 22 21 2 41 41 H 1.08997 * 110.26667 * 0.73389 * 26 2 1 42 42 H 1.08998 * 110.27141 * 122.70709 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0046 1.3859 0.0000 4 6 1.6592 2.2166 1.0035 5 8 0.9539 1.8155 1.9091 6 7 2.0954 3.4917 1.0032 7 6 1.8288 4.3190 2.0911 8 6 1.5999 5.6799 1.8883 9 6 1.3334 6.4955 2.9483 10 6 1.3003 5.9622 4.2517 11 6 1.0301 6.8008 5.3546 12 1 1.3892 6.5331 6.3372 13 6 0.2971 7.9786 5.1745 14 7 -0.4125 8.1482 4.0879 15 14 0.3310 9.3093 6.4850 16 1 1.4430 10.2526 6.2041 17 1 -0.9580 10.0468 6.4751 18 1 0.5347 8.6866 7.8177 19 6 1.5378 4.5877 4.4492 20 6 1.7982 3.7838 3.3788 21 6 2.0262 -0.6945 1.2695 22 6 2.2014 -2.2056 0.9744 23 16 2.9763 -2.1534 -0.6920 24 8 2.5902 -3.3022 -1.4338 25 8 4.3498 -1.8101 -0.5688 26 6 2.0284 -0.6975 -1.2748 27 1 -0.3633 0.5030 -0.8963 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3633 0.5248 0.8836 30 1 2.5675 1.7058 -0.7224 31 1 2.5951 3.8333 0.2452 32 1 1.6296 6.0880 0.8888 33 1 1.1527 7.5483 2.7893 34 1 -0.9211 8.9647 3.9632 35 1 1.5145 4.1720 5.4456 36 1 1.9800 2.7298 3.5284 37 1 2.9817 -0.2660 1.5721 38 1 1.2973 -0.5616 2.0689 39 1 1.2382 -2.7148 0.9430 40 1 2.8658 -2.6728 1.7013 41 1 1.1837 -1.0167 -1.8853 42 1 2.6735 -0.0282 -1.8439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136738394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:40 Heat of formation + Delta-G solvation = -65.601343 kcal Electronic energy + Delta-G solvation = -26864.924859 eV Core-core repulsion = 22937.516074 eV Total energy + Delta-G solvation = -3927.408786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50966 -38.31051 -37.40520 -36.83862 -36.34422 -34.41267 -33.37439 -32.54979 -30.50678 -29.56292 -28.71695 -28.11814 -25.16001 -24.46305 -22.19604 -21.18606 -20.35871 -19.83131 -19.26368 -18.07287 -17.32274 -17.26904 -16.63031 -16.57767 -16.08009 -15.46311 -15.18555 -14.98725 -14.52198 -14.33648 -13.94348 -13.81245 -13.31233 -13.13129 -12.97163 -12.72453 -12.63292 -12.44576 -12.39156 -12.23438 -12.10591 -11.89259 -11.81543 -11.43209 -11.26634 -11.16199 -11.10850 -11.02561 -10.74136 -10.62047 -10.01572 -9.59989 -9.50820 -9.23187 -9.09552 -8.93656 -7.55515 -6.98263 -6.74756 -4.30764 -0.34658 2.05362 2.61943 2.85681 3.05563 3.08595 3.10022 3.12854 3.16803 3.55545 3.63366 3.90406 3.92169 4.18789 4.33280 4.40737 4.56062 4.62425 4.66057 4.89100 5.14089 5.26730 5.45863 5.52288 5.68434 5.68816 5.94267 6.16804 6.20376 6.38086 6.45592 6.73709 6.77299 7.02556 7.09238 7.24871 7.32974 7.59529 7.83774 7.94229 8.03553 8.27033 8.41817 8.59246 8.87789 8.88330 9.05110 10.17211 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036521 B = 0.002194 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.507916 B =12760.595447 C =12886.289178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 N -0.747 5.747 4 C 0.696 3.304 5 O -0.571 6.571 6 N -0.664 5.664 7 C 0.011 3.989 8 C -0.115 4.115 9 C -0.153 4.153 10 C 0.104 3.896 11 C -0.458 4.458 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.794 5.794 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.215 4.215 20 C -0.075 4.075 21 C -0.132 4.132 22 C -0.572 4.572 23 S 2.382 3.618 24 O -0.938 6.938 25 O -0.929 6.929 26 C -0.597 4.597 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.395 0.605 31 H 0.391 0.609 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.280 0.720 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -14.324 -10.868 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.124 3.876 3 N -0.405 5.405 4 C 0.397 3.603 5 O -0.448 6.448 6 N -0.309 5.309 7 C -0.082 4.082 8 C -0.135 4.135 9 C -0.172 4.172 10 C 0.102 3.898 11 C -0.488 4.488 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.420 5.420 15 Si 0.734 3.266 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.235 4.235 20 C -0.095 4.095 21 C -0.172 4.172 22 C -0.703 4.703 23 S 2.565 3.435 24 O -0.935 6.935 25 O -0.926 6.926 26 C -0.726 4.726 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.230 0.770 31 H 0.224 0.776 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.516 -15.105 -10.599 18.785 hybrid contribution -0.266 1.555 0.016 1.578 sum 3.250 -13.550 -10.583 17.498 Atomic orbital electron populations 1.22488 0.92618 1.02713 1.05021 1.19956 0.96133 0.81469 0.90045 1.45456 1.57320 1.10434 1.27320 1.15974 0.80538 0.81344 0.82480 1.90875 1.41119 1.75732 1.37097 1.42128 1.57557 1.09876 1.21383 1.16935 1.16518 0.89421 0.85297 1.20196 1.03281 0.92253 0.97793 1.20884 1.04848 0.99424 0.92092 1.17657 0.88311 0.90835 0.93034 1.19559 1.29667 1.03720 0.95833 0.90386 1.25919 0.93141 0.98895 0.96405 1.69847 1.20127 1.25804 1.26176 0.86297 0.78328 0.80472 0.81526 1.19301 1.20362 1.18621 1.20646 1.12385 0.93666 0.96783 1.20230 0.99983 0.98264 0.91072 1.22553 1.05761 0.89245 0.99606 1.30522 1.14017 1.04038 1.21677 1.09364 0.77026 0.77303 0.79788 1.93618 1.84495 1.45836 1.69579 1.93651 1.28860 1.84238 1.85855 1.30813 1.15619 1.19895 1.06286 0.92052 0.91688 0.88575 0.77047 0.77593 0.89299 0.86124 0.90899 0.88772 0.88006 0.88991 0.86368 0.84260 0.84217 0.83256 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 7.84 37.15 0.29 -1.36 16 2 C 0.21 1.92 0.94 -131.51 -0.12 1.80 16 3 N -0.75 -7.97 5.02 -52.13 -0.26 -8.23 16 4 C 0.70 10.95 7.67 -86.93 -0.67 10.29 16 5 O -0.57 -10.94 10.67 5.29 0.06 -10.89 16 6 N -0.66 -10.94 5.31 -14.10 -0.07 -11.01 16 7 C 0.01 0.23 6.27 -83.57 -0.52 -0.29 16 8 C -0.11 -2.55 9.89 -39.79 -0.39 -2.95 16 9 C -0.15 -3.85 8.63 -39.26 -0.34 -4.19 16 10 C 0.10 2.75 5.57 -106.80 -0.59 2.16 16 11 C -0.46 -12.02 9.04 -37.85 -0.34 -12.36 16 12 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 13 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 14 N -0.79 -20.27 10.94 55.55 0.61 -19.66 16 15 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 19 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 20 C -0.08 -1.74 8.57 -39.79 -0.34 -2.08 16 21 C -0.13 -1.24 4.37 -25.71 -0.11 -1.35 16 22 C -0.57 -3.64 7.46 38.19 0.28 -3.36 16 23 S 2.38 18.13 6.04 -107.50 -0.65 17.48 16 24 O -0.94 -9.94 18.16 -57.67 -1.05 -10.99 16 25 O -0.93 -10.49 18.16 -57.67 -1.05 -11.53 16 26 C -0.60 -3.54 6.69 37.48 0.25 -3.29 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.28 5.99 -51.93 -0.31 0.97 16 30 H 0.39 3.03 8.01 -40.82 -0.33 2.70 16 31 H 0.39 4.99 8.83 -40.82 -0.36 4.63 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.12 3.13 6.18 -52.49 -0.32 2.80 16 34 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 35 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.10 2.29 6.47 -52.49 -0.34 1.95 16 37 H 0.09 0.94 8.04 -51.93 -0.42 0.53 16 38 H 0.12 1.32 7.01 -51.93 -0.36 0.95 16 39 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.15 0.60 7.63 -51.93 -0.40 0.20 16 42 H 0.14 0.60 7.37 -51.93 -0.38 0.22 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -35.05 353.45 -10.51 -45.56 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.31 Total: 11.51 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -3.08 Total: -20.96 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.27 Total: -38.91 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -2.04 Total: -33.41 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: 18.13 SS G_CDS: -0.65 Total: 17.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.05 -10.51 -45.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136738394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.038 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds