Wall clock time and date at job start Tue Mar 31 2020 20:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 108.90475 * 2 1 4 4 C 1.34771 * 120.00333 * 59.29614 * 3 2 1 5 5 O 1.21582 * 119.99659 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00396 * 180.02562 * 4 3 2 7 7 C 1.39243 * 120.00361 * 185.14740 * 6 4 3 8 8 C 1.39481 * 119.83580 * 214.20559 * 7 6 4 9 9 C 1.36378 * 120.16806 * 179.75540 * 8 7 6 10 10 C 1.40865 * 119.82852 * 0.51903 * 9 8 7 11 11 C 1.41156 * 120.16529 * 179.76153 * 10 9 8 12 12 H 1.07995 * 119.99967 * 205.33804 * 11 10 9 13 13 C 1.39896 * 119.99748 * 25.33380 * 11 10 9 14 14 N 1.30878 * 119.99957 * 16.83931 * 13 11 10 15 15 Si 1.86797 * 119.99808 * 196.83592 * 13 11 10 16 16 H 1.48498 * 109.47378 * 90.00601 * 15 13 11 17 17 H 1.48507 * 109.47031 * 210.00345 * 15 13 11 18 18 H 1.48501 * 109.47322 * 329.99785 * 15 13 11 19 19 C 1.40874 * 119.67356 * 359.73521 * 10 9 8 20 20 C 1.36377 * 119.82727 * 0.02562 * 19 10 9 21 21 C 1.52977 * 108.92934 * 118.68379 * 2 1 3 22 22 C 1.54950 * 108.74631 * 90.56387 * 21 2 1 23 23 S 1.83845 * 101.10457 * 42.03190 * 22 21 2 24 24 O 1.42099 * 109.61373 * 210.98328 * 23 22 21 25 25 O 1.42102 * 109.61349 * 77.03168 * 23 22 21 26 26 C 1.53622 * 108.93147 * 241.31243 * 2 1 3 27 27 H 1.09010 * 109.46843 * 60.69800 * 1 2 3 28 28 H 1.08991 * 109.47732 * 180.70185 * 1 2 3 29 29 H 1.09004 * 109.46934 * 300.70541 * 1 2 3 30 30 H 0.97008 * 119.99676 * 239.30216 * 3 2 1 31 31 H 0.97005 * 120.00073 * 5.14235 * 6 4 3 32 32 H 1.08000 * 119.91260 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.08183 * 180.22992 * 9 8 7 34 34 H 0.97004 * 120.00078 * 179.97438 * 14 13 11 35 35 H 1.07993 * 120.08489 * 179.97438 * 19 10 9 36 36 H 1.07993 * 119.91720 * 180.02562 * 20 19 10 37 37 H 1.09003 * 109.64947 * 210.51038 * 21 2 1 38 38 H 1.09000 * 109.65322 * 330.82842 * 21 2 1 39 39 H 1.08998 * 111.17083 * 284.05933 * 22 21 2 40 40 H 1.08999 * 111.09463 * 159.97743 * 22 21 2 41 41 H 1.08997 * 110.26667 * 0.73389 * 26 2 1 42 42 H 1.08998 * 110.27141 * 122.70709 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0046 1.3859 0.0000 4 6 1.6592 2.2166 1.0035 5 8 0.9539 1.8155 1.9091 6 7 2.0954 3.4917 1.0032 7 6 1.8288 4.3190 2.0911 8 6 1.5999 5.6799 1.8883 9 6 1.3334 6.4955 2.9483 10 6 1.3003 5.9622 4.2517 11 6 1.0301 6.8008 5.3546 12 1 1.3892 6.5331 6.3372 13 6 0.2971 7.9786 5.1745 14 7 -0.4125 8.1482 4.0879 15 14 0.3310 9.3093 6.4850 16 1 1.4430 10.2526 6.2041 17 1 -0.9580 10.0468 6.4751 18 1 0.5347 8.6866 7.8177 19 6 1.5378 4.5877 4.4492 20 6 1.7982 3.7838 3.3788 21 6 2.0262 -0.6945 1.2695 22 6 2.2014 -2.2056 0.9744 23 16 2.9763 -2.1534 -0.6920 24 8 2.5902 -3.3022 -1.4338 25 8 4.3498 -1.8101 -0.5688 26 6 2.0284 -0.6975 -1.2748 27 1 -0.3633 0.5030 -0.8963 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3633 0.5248 0.8836 30 1 2.5675 1.7058 -0.7224 31 1 2.5951 3.8333 0.2452 32 1 1.6296 6.0880 0.8888 33 1 1.1527 7.5483 2.7893 34 1 -0.9211 8.9647 3.9632 35 1 1.5145 4.1720 5.4456 36 1 1.9800 2.7298 3.5284 37 1 2.9817 -0.2660 1.5721 38 1 1.2973 -0.5616 2.0689 39 1 1.2382 -2.7148 0.9430 40 1 2.8658 -2.6728 1.7013 41 1 1.1837 -1.0167 -1.8853 42 1 2.6735 -0.0282 -1.8439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136738394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:40 Heat of formation + Delta-G solvation = -92.298602 kcal Electronic energy + Delta-G solvation = -26866.082539 eV Core-core repulsion = 22937.516074 eV Total energy + Delta-G solvation = -3928.566466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69129 -39.71030 -38.31445 -38.02853 -37.08166 -36.03666 -34.86604 -33.72798 -31.50607 -31.26950 -30.37672 -28.79394 -26.80188 -25.30538 -23.66715 -22.85765 -21.88992 -20.82398 -19.99761 -19.37838 -19.04787 -18.32073 -17.61784 -17.30366 -17.07899 -16.84240 -16.31230 -16.27098 -15.69664 -15.62460 -15.11182 -14.89323 -14.66582 -14.42499 -13.96712 -13.88186 -13.78725 -13.55656 -13.44839 -13.20747 -13.15119 -13.13441 -12.92424 -12.81350 -12.74971 -12.58724 -12.41933 -12.07418 -11.85650 -11.72692 -11.39672 -11.33740 -11.09996 -10.83429 -10.59173 -10.14221 -9.43017 -8.78934 -8.56482 -6.24278 -0.95216 0.88554 1.17897 1.39999 1.43332 1.50303 1.53068 1.81676 2.22398 2.25062 2.54988 2.78513 2.98247 3.29100 3.34890 3.54945 3.69244 3.76752 3.90328 3.99570 4.31452 4.42006 4.53909 4.64252 4.69027 4.77570 4.81419 4.94753 4.95752 5.11664 5.16628 5.21427 5.33239 5.40088 5.48490 5.54690 5.67803 5.82812 6.07411 6.14766 6.26610 6.41818 6.69271 6.96296 7.03798 7.19046 7.72027 8.35834 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.036521 B = 0.002194 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.507916 B =12760.595447 C =12886.289178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.206 3.794 3 N -0.727 5.727 4 C 0.694 3.306 5 O -0.606 6.606 6 N -0.661 5.661 7 C 0.034 3.966 8 C -0.115 4.115 9 C -0.171 4.171 10 C 0.072 3.928 11 C -0.497 4.497 12 H 0.073 0.927 13 C 0.034 3.966 14 N -0.826 5.826 15 Si 0.983 3.017 16 H -0.260 1.260 17 H -0.269 1.269 18 H -0.261 1.261 19 C -0.231 4.231 20 C -0.085 4.085 21 C -0.137 4.137 22 C -0.558 4.558 23 S 2.398 3.602 24 O -0.967 6.967 25 O -0.969 6.969 26 C -0.579 4.579 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.413 0.587 31 H 0.412 0.588 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.288 0.712 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.179 0.821 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -15.015 -12.802 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.118 3.882 3 N -0.386 5.386 4 C 0.395 3.605 5 O -0.485 6.485 6 N -0.309 5.309 7 C -0.061 4.061 8 C -0.135 4.135 9 C -0.191 4.191 10 C 0.069 3.931 11 C -0.527 4.527 12 H 0.091 0.909 13 C -0.180 4.180 14 N -0.453 5.453 15 Si 0.804 3.196 16 H -0.185 1.185 17 H -0.193 1.193 18 H -0.185 1.185 19 C -0.251 4.251 20 C -0.105 4.105 21 C -0.177 4.177 22 C -0.690 4.690 23 S 2.585 3.415 24 O -0.964 6.964 25 O -0.966 6.966 26 C -0.709 4.709 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.251 0.749 31 H 0.249 0.751 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.182 0.818 40 H 0.170 0.830 41 H 0.197 0.803 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.599 -15.852 -12.612 20.575 hybrid contribution -0.292 1.602 0.501 1.704 sum 3.307 -14.250 -12.111 18.992 Atomic orbital electron populations 1.22483 0.92774 1.04217 1.03478 1.20154 0.96099 0.80496 0.91441 1.45314 1.56514 1.10489 1.26275 1.16128 0.80125 0.81224 0.83004 1.90876 1.42551 1.76289 1.38800 1.41941 1.58175 1.09940 1.20847 1.16943 1.13260 0.89750 0.86108 1.20449 1.02141 0.92405 0.98547 1.20887 1.06210 0.99351 0.92664 1.17969 0.89604 0.91553 0.93934 1.19765 1.31584 1.05564 0.95780 0.90917 1.26731 0.92067 1.00480 0.98744 1.69889 1.20698 1.26732 1.27939 0.85192 0.78751 0.77293 0.78380 1.18462 1.19316 1.18521 1.20777 1.13214 0.93697 0.97457 1.20351 1.00289 0.98251 0.91654 1.22492 1.04443 0.91391 0.99365 1.30498 1.15512 1.02197 1.20799 1.08725 0.76131 0.77029 0.79660 1.93583 1.84716 1.47602 1.70532 1.93600 1.31769 1.84799 1.86474 1.30720 1.16584 1.18464 1.05145 0.91216 0.88768 0.92438 0.74899 0.75107 0.86076 0.87367 0.90141 0.88965 0.87644 0.90229 0.88379 0.81799 0.82979 0.80315 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 7.84 71.98 0.56 -2.33 16 2 C 0.21 3.16 0.94 3.80 0.00 3.17 16 3 N -0.73 -13.59 5.02 -437.12 -2.19 -15.79 16 4 C 0.69 20.81 7.67 179.06 1.37 22.18 16 5 O -0.61 -23.08 10.67 -3.97 -0.04 -23.12 16 6 N -0.66 -20.52 5.31 -316.79 -1.68 -22.20 16 7 C 0.03 1.41 6.27 38.57 0.24 1.66 16 8 C -0.11 -5.05 9.89 22.14 0.22 -4.84 16 9 C -0.17 -8.83 8.63 22.48 0.19 -8.64 16 10 C 0.07 3.95 5.57 -21.27 -0.12 3.83 16 11 C -0.50 -27.19 9.04 23.39 0.21 -26.98 16 12 H 0.07 3.87 7.90 -2.91 -0.02 3.85 16 13 C 0.03 1.73 5.15 85.24 0.44 2.17 16 14 N -0.83 -43.15 10.94 21.82 0.24 -42.91 16 15 Si 0.98 38.31 29.59 68.60 2.03 40.34 16 16 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 17 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 19 C -0.23 -11.95 9.74 22.48 0.22 -11.73 16 20 C -0.09 -4.00 8.57 22.14 0.19 -3.81 16 21 C -0.14 -2.37 4.37 31.25 0.14 -2.24 16 22 C -0.56 -5.82 7.46 72.65 0.54 -5.28 16 23 S 2.40 30.86 6.04 -56.49 -0.34 30.52 16 24 O -0.97 -18.34 18.16 -127.52 -2.32 -20.66 16 25 O -0.97 -20.47 18.16 -127.52 -2.32 -22.78 16 26 C -0.58 -4.59 6.69 72.19 0.48 -4.11 16 27 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.49 5.99 -2.38 -0.01 1.47 16 30 H 0.41 4.80 8.01 -92.70 -0.74 4.05 16 31 H 0.41 9.29 8.83 -92.70 -0.82 8.47 16 32 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 34 H 0.29 13.54 8.30 -92.70 -0.77 12.77 16 35 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.11 4.83 6.47 -2.91 -0.02 4.81 16 37 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16 38 H 0.10 2.16 7.01 -2.39 -0.02 2.14 16 39 H 0.16 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.18 0.51 7.63 -2.39 -0.02 0.49 16 42 H 0.17 0.62 7.37 -2.39 -0.02 0.60 16 Total: -1.00 -79.55 353.45 -2.40 -81.96 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.48 Total: 31.60 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.70 Total: -36.95 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.64 Total: -80.90 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -4.67 Total: -66.56 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 30.86 SS G_CDS: -0.34 Total: 30.52 kcal Total: -79.55 -2.40 -81.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136738394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.343 kcal (2) G-P(sol) polarization free energy of solvation -79.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds