Wall clock time and date at job start Tue Mar 31 2020 21:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47120 * 2 1 4 4 H 1.08996 * 109.47233 * 55.22345 * 3 2 1 5 5 C 1.50699 * 109.47055 * 175.22054 * 3 2 1 6 6 H 1.08001 * 119.99773 * 119.99812 * 5 3 2 7 7 C 1.37878 * 120.00056 * 299.99947 * 5 3 2 8 8 N 1.31516 * 119.99908 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99976 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46850 * 89.99838 * 9 7 5 11 11 H 1.48498 * 109.47203 * 209.99773 * 9 7 5 12 12 H 1.48497 * 109.47370 * 330.00440 * 9 7 5 13 13 N 1.46502 * 109.46932 * 295.21981 * 3 2 1 14 14 S 1.65603 * 119.99626 * 144.21919 * 13 3 2 15 15 O 1.42099 * 106.40199 * 310.38985 * 14 13 3 16 16 O 1.42101 * 106.40013 * 177.47481 * 14 13 3 17 17 C 1.76198 * 107.21858 * 63.93299 * 14 13 3 18 18 C 1.38378 * 119.90498 * 269.97465 * 17 14 13 19 19 C 1.38435 * 120.44093 * 180.02562 * 18 17 14 20 20 C 1.37770 * 119.93196 * 359.97438 * 19 18 17 21 21 C 1.39711 * 119.84214 * 359.95830 * 20 19 18 22 22 C 1.38082 * 119.91055 * 89.99948 * 17 14 13 23 23 C 1.47878 * 118.77668 * 180.09633 * 21 20 19 24 24 O 1.21554 * 120.45181 * 197.37447 * 23 21 20 25 25 N 1.34824 * 119.10314 * 17.64744 * 23 21 20 26 26 C 1.46045 * 121.17520 * 2.73506 * 25 23 21 27 27 C 1.50551 * 120.94759 * 179.97438 * 20 19 18 28 28 H 1.09003 * 109.47370 * 55.26730 * 1 2 3 29 29 H 1.08998 * 109.47669 * 175.26751 * 1 2 3 30 30 H 1.09006 * 109.47427 * 295.26963 * 1 2 3 31 31 H 1.09000 * 109.47143 * 240.00397 * 2 1 3 32 32 H 1.08997 * 109.47155 * 120.00042 * 2 1 3 33 33 H 0.96997 * 119.99570 * 179.97438 * 8 7 5 34 34 H 0.96992 * 120.00211 * 324.21614 * 13 3 2 35 35 H 1.08004 * 119.78245 * 0.03055 * 18 17 14 36 36 H 1.08000 * 120.03446 * 179.97438 * 19 18 17 37 37 H 1.08008 * 120.21656 * 359.96212 * 22 17 14 38 38 H 0.96992 * 119.41601 * 182.72277 * 25 23 21 39 39 H 1.08993 * 109.16476 * 201.87514 * 26 25 23 40 40 H 1.09000 * 109.11482 * 82.65529 * 26 25 23 41 41 H 1.08999 * 109.39764 * 266.13637 * 27 20 19 42 42 H 1.09000 * 109.39944 * 25.86462 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9805 0.8441 5 6 3.5423 1.4442 0.1184 6 1 4.1447 1.8897 -0.6594 7 6 4.1477 0.8769 1.2196 8 7 3.4140 0.3338 2.1665 9 14 6.0099 0.8783 1.3660 10 1 6.4503 2.1103 2.0684 11 1 6.4468 -0.3137 2.1363 12 1 6.6132 0.8395 0.0096 13 7 1.6478 2.0991 -1.2496 14 16 1.2325 3.7022 -1.2476 15 8 0.2864 3.8703 -0.2007 16 8 0.9654 4.0491 -2.5995 17 6 2.6654 4.6117 -0.7742 18 6 2.9003 4.8824 0.5624 19 6 4.0222 5.5965 0.9467 20 6 4.9132 6.0416 -0.0052 21 6 4.6812 5.7696 -1.3558 22 6 3.5505 5.0528 -1.7379 23 6 5.6539 6.2568 -2.3574 24 8 5.3476 6.3238 -3.5318 25 7 6.8870 6.6203 -1.9512 26 6 7.2935 6.4851 -0.5550 27 6 6.1403 6.8206 0.3871 28 1 -0.3634 0.5855 -0.8446 29 1 -0.3634 -1.0241 -0.0848 30 1 -0.3634 0.4387 0.9294 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8400 -0.0656 2.9410 34 1 1.6316 1.5949 -2.0780 35 1 2.2037 4.5342 1.3107 36 1 4.1989 5.8044 1.9917 37 1 3.3677 4.8416 -2.7812 38 1 7.5155 6.9778 -2.5977 39 1 8.1255 7.1610 -0.3575 40 1 7.6153 5.4594 -0.3746 41 1 5.9255 7.8877 0.3296 42 1 6.4210 6.5638 1.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186437872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:14 Heat of formation + Delta-G solvation = -119.361625 kcal Electronic energy + Delta-G solvation = -28264.953335 eV Core-core repulsion = 24335.213328 eV Total energy + Delta-G solvation = -3929.740007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74967 -39.35824 -38.36051 -37.66868 -37.23292 -36.92524 -34.12179 -33.36702 -32.28376 -32.22498 -30.24252 -28.50627 -25.45518 -25.20967 -24.83438 -22.91094 -21.92192 -21.26864 -20.16151 -19.07584 -18.57923 -18.44599 -18.30408 -17.20268 -17.08895 -16.98329 -16.48149 -16.22113 -15.69110 -15.47787 -15.25547 -14.86798 -14.82772 -14.70044 -14.48164 -14.20807 -13.58940 -13.50295 -13.36640 -13.22361 -13.13383 -13.04993 -12.96079 -12.81559 -12.73101 -12.60112 -12.39748 -12.11081 -11.92926 -11.60648 -11.56345 -11.42493 -11.14265 -10.43850 -10.41224 -10.16773 -10.03432 -9.94056 -8.06117 -6.20319 -0.56653 -0.35563 -0.05608 1.41140 1.46757 1.53220 1.54428 2.13866 2.14105 2.46066 2.51835 2.84262 3.20762 3.26130 3.50397 3.52689 3.61304 3.88083 4.09347 4.27712 4.31919 4.36981 4.50032 4.60509 4.61512 4.72677 4.76291 4.82548 4.90239 4.90882 4.99491 5.05185 5.14658 5.20129 5.37156 5.45396 5.64550 5.70198 5.81527 5.85890 6.01594 6.04228 6.26103 6.44082 6.87496 7.05362 7.48997 8.96467 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.005771 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.734440 B = 4850.727903 C = 6462.101490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.029 0.971 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.032 3.968 8 N -0.907 5.907 9 Si 0.938 3.062 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.280 1.280 13 N -1.098 6.098 14 S 2.707 3.293 15 O -0.986 6.986 16 O -0.997 6.997 17 C -0.679 4.679 18 C 0.017 3.983 19 C -0.142 4.142 20 C 0.004 3.996 21 C -0.186 4.186 22 C 0.024 3.976 23 C 0.564 3.436 24 O -0.580 6.580 25 N -0.711 5.711 26 C 0.105 3.895 27 C -0.106 4.106 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.264 0.736 34 H 0.416 0.584 35 H 0.141 0.859 36 H 0.174 0.826 37 H 0.132 0.868 38 H 0.416 0.584 39 H 0.139 0.861 40 H 0.066 0.934 41 H 0.115 0.885 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.310 11.289 1.102 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.047 0.953 5 C -0.574 4.574 6 H 0.072 0.928 7 C -0.169 4.169 8 N -0.546 5.546 9 Si 0.764 3.236 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.859 5.859 14 S 2.798 3.202 15 O -0.976 6.976 16 O -0.987 6.987 17 C -0.768 4.768 18 C -0.002 4.002 19 C -0.160 4.160 20 C 0.003 3.997 21 C -0.190 4.190 22 C 0.004 3.996 23 C 0.353 3.647 24 O -0.462 6.462 25 N -0.363 5.363 26 C -0.018 4.018 27 C -0.143 4.143 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.251 0.749 35 H 0.159 0.841 36 H 0.191 0.809 37 H 0.150 0.850 38 H 0.254 0.746 39 H 0.157 0.843 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.247 11.606 0.812 13.707 hybrid contribution 1.528 -0.531 -0.422 1.672 sum 8.776 11.075 0.389 14.136 Atomic orbital electron populations 1.21777 0.96854 1.00906 1.00678 1.21703 0.94006 0.98094 1.02222 1.18425 0.93373 0.91191 0.79524 0.95281 1.21688 0.92230 1.38025 1.05476 0.92755 1.25431 1.01301 0.94780 0.95405 1.69959 1.36230 1.38534 1.09880 0.85865 0.81862 0.78088 0.77799 1.18866 1.21325 1.20487 1.55301 1.85934 1.26579 1.18053 1.01052 0.73979 0.72945 0.72194 1.93518 1.59062 1.86278 1.58772 1.93508 1.85108 1.83819 1.36262 1.30678 1.23529 1.20377 1.02182 1.21293 0.96156 0.89416 0.93356 1.21422 0.93762 0.99375 1.01448 1.20728 0.95949 0.92087 0.90938 1.19871 0.97673 1.06644 0.94771 1.20764 0.90212 0.89897 0.98729 1.18286 0.83267 0.76365 0.86831 1.90785 1.79501 1.56343 1.19538 1.45650 1.13222 1.64865 1.12582 1.21670 0.97957 1.03953 0.78182 1.21160 0.89823 1.00930 1.02404 0.93396 0.92310 0.94224 0.93638 0.89954 0.92617 0.74928 0.84082 0.80874 0.84967 0.74630 0.84281 0.91584 0.86688 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.85 71.98 0.71 -4.74 16 2 C -0.12 -5.22 5.38 30.59 0.16 -5.05 16 3 C 0.28 12.70 2.28 44.25 0.10 12.80 16 4 H 0.03 1.46 7.53 -2.39 -0.02 1.44 16 5 C -0.53 -25.92 8.84 25.60 0.23 -25.69 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.03 1.55 5.29 84.65 0.45 2.00 16 8 N -0.91 -46.46 11.29 21.45 0.24 -46.21 16 9 Si 0.94 39.06 29.54 68.60 2.03 41.09 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 13 N -1.10 -43.84 4.81 -172.52 -0.83 -44.67 16 14 S 2.71 108.51 5.70 -56.49 -0.32 108.19 16 15 O -0.99 -43.09 16.65 -128.00 -2.13 -45.22 16 16 O -1.00 -42.47 17.28 -128.00 -2.21 -44.68 16 17 C -0.68 -25.58 5.93 22.27 0.13 -25.44 16 18 C 0.02 0.59 9.51 22.35 0.21 0.80 16 19 C -0.14 -3.75 9.73 22.21 0.22 -3.53 16 20 C 0.00 0.10 5.68 -19.67 -0.11 -0.01 16 21 C -0.19 -5.96 5.78 -20.13 -0.12 -6.07 16 22 C 0.02 0.91 9.11 22.47 0.20 1.11 16 23 C 0.56 17.33 7.79 86.79 0.68 18.00 16 24 O -0.58 -22.41 17.46 -3.89 -0.07 -22.48 16 25 N -0.71 -13.82 5.58 -467.45 -2.61 -16.43 16 26 C 0.11 1.28 7.03 86.35 0.61 1.88 16 27 C -0.11 -1.39 6.04 29.68 0.18 -1.22 16 28 H 0.05 1.70 7.62 -2.39 -0.02 1.68 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 4.00 5.96 -2.39 -0.01 3.99 16 33 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 34 H 0.42 14.80 8.84 -96.75 -0.86 13.94 16 35 H 0.14 4.83 7.60 -2.91 -0.02 4.81 16 36 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.13 5.15 7.41 -2.91 -0.02 5.13 16 38 H 0.42 6.29 8.92 -92.71 -0.83 5.46 16 39 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.13 1.03 8.07 -2.39 -0.02 1.01 16 Total: -1.00 -71.47 362.85 -2.86 -74.33 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.61 Total: 31.24 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.65 Total: -35.16 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -3.20 Total: -107.31 kcal Atomic # 8 Polarization: -107.97 SS G_CDS: -4.41 Total: -112.38 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.32 Total: 108.19 kcal Total: -71.47 -2.86 -74.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186437872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.029 kcal (2) G-P(sol) polarization free energy of solvation -71.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds