Wall clock time and date at job start Tue Mar 31 2020 21:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21694 * 120.00256 * 359.97438 * 14 13 3 16 16 C 1.46430 * 119.99690 * 179.97438 * 14 13 3 17 17 C 1.34817 * 119.99584 * 179.97438 * 16 14 13 18 18 C 1.47209 * 119.99541 * 180.02562 * 17 16 14 19 19 C 1.39829 * 120.17468 * 359.72470 * 18 17 16 20 20 C 1.37887 * 119.83063 * 179.76766 * 19 18 17 21 21 C 1.38402 * 120.16865 * 0.53124 * 20 19 18 22 22 S 1.76202 * 119.83134 * 179.72052 * 21 20 19 23 23 N 1.65596 * 107.21569 * 269.97989 * 22 21 20 24 24 O 1.42099 * 106.40024 * 23.51758 * 22 21 20 25 25 O 1.42099 * 106.40165 * 156.43776 * 22 21 20 26 26 C 1.38405 * 120.34507 * 359.69900 * 21 20 19 27 27 C 1.37895 * 120.16616 * 0.04382 * 26 21 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.07995 * 120.00267 * 0.02562 * 16 14 13 36 36 H 1.07995 * 120.00148 * 0.02562 * 17 16 14 37 37 H 1.08006 * 120.08422 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.91782 * 180.25427 * 20 19 18 39 39 H 0.97002 * 120.00470 * 359.97438 * 23 22 21 40 40 H 0.97009 * 120.00045 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.91859 * 180.02562 * 26 21 20 42 42 H 1.08007 * 120.08372 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0477 3.3185 2.6184 17 6 -1.1698 3.8860 2.7334 18 6 -1.5591 4.5442 3.9913 19 6 -0.6713 4.5778 5.0710 20 6 -1.0415 5.2003 6.2443 21 6 -2.2924 5.7814 6.3587 22 16 -2.7590 6.5682 7.8647 23 7 -3.4764 5.4185 8.8165 24 8 -1.5509 6.9330 8.5178 25 8 -3.7751 7.5037 7.5306 26 6 -3.1786 5.7482 5.2961 27 6 -2.8210 5.1340 4.1145 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.7374 3.3470 3.4489 36 1 -1.8593 3.8579 1.9027 37 1 0.3036 4.1208 4.9848 38 1 -0.3553 5.2306 7.0778 39 1 -3.5667 4.5085 8.4931 40 1 -3.8063 5.6552 9.6975 41 1 -4.1528 6.2042 5.3928 42 1 -3.5138 5.1085 3.2863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281654431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:29 Heat of formation + Delta-G solvation = -76.653917 kcal Electronic energy + Delta-G solvation = -25625.949791 eV Core-core repulsion = 21698.061729 eV Total energy + Delta-G solvation = -3927.888061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.81153 -39.01726 -37.49619 -36.18390 -35.35304 -34.21126 -33.60795 -32.45239 -31.58300 -31.12200 -29.93120 -27.14070 -24.84279 -23.35021 -23.02810 -21.54870 -20.01159 -19.61757 -19.28460 -18.86602 -17.77516 -17.52627 -16.77629 -16.24679 -16.04872 -15.49539 -15.39175 -15.05815 -14.68756 -14.54753 -14.32810 -13.90558 -13.60407 -13.32266 -12.96408 -12.68511 -12.53406 -12.44523 -12.34385 -12.22797 -12.10413 -11.59911 -11.40771 -11.30412 -11.19796 -11.04463 -10.93100 -10.89176 -10.77535 -10.38581 -10.23750 -9.70047 -9.49472 -9.22968 -9.11162 -8.77229 -8.55320 -7.90142 -6.17384 -4.27311 -0.16884 0.11673 0.90924 1.64566 2.73213 3.10072 3.22113 3.27858 3.28632 3.38228 3.86465 3.90018 4.06448 4.29586 4.42152 4.44268 4.62439 4.83497 4.97890 5.02317 5.14058 5.26748 5.45898 5.51104 5.53795 5.64695 5.71155 5.78663 6.24288 6.33033 6.33489 6.39271 6.39928 6.55667 6.59676 6.97537 7.13477 7.28933 7.35642 7.55621 7.66693 7.83467 8.11802 8.56470 8.70535 9.01750 9.39977 10.87893 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.001908 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.690813 B =14673.469591 C =15332.732614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.698 5.698 14 C 0.524 3.476 15 O -0.547 6.547 16 C -0.157 4.157 17 C -0.076 4.076 18 C 0.009 3.991 19 C -0.135 4.135 20 C -0.016 4.016 21 C -0.682 4.682 22 S 2.703 3.297 23 N -1.251 6.251 24 O -0.964 6.964 25 O -0.965 6.965 26 C -0.018 4.018 27 C -0.127 4.127 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.266 0.734 34 H 0.390 0.610 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.417 0.583 40 H 0.420 0.580 41 H 0.144 0.856 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 7.204 20.345 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.428 6.428 16 C -0.177 4.177 17 C -0.096 4.096 18 C 0.009 3.991 19 C -0.154 4.154 20 C -0.035 4.035 21 C -0.771 4.771 22 S 2.793 3.207 23 N -0.926 5.926 24 O -0.954 6.954 25 O -0.954 6.954 26 C -0.037 4.037 27 C -0.146 4.146 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.222 0.778 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.244 0.756 40 H 0.250 0.750 41 H 0.162 0.838 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.302 8.099 19.559 25.002 hybrid contribution 1.287 -0.953 -0.033 1.602 sum -12.015 7.146 19.526 24.014 Atomic orbital electron populations 1.21843 0.98340 0.98086 1.01197 1.21937 0.92616 0.99701 1.02377 1.18829 0.94315 0.89240 0.80866 0.93171 1.21180 0.90615 1.39305 1.06406 0.92107 1.24891 0.98685 0.94735 0.95351 1.69881 1.35283 1.37418 1.09299 0.86500 0.84732 0.78340 0.77481 1.20145 1.21106 1.20171 1.46473 1.14316 1.54985 1.18656 1.18165 0.83227 0.80012 0.87555 1.90795 1.51483 1.60208 1.40312 1.23513 0.97314 0.98502 0.98419 1.22335 0.97066 0.94837 0.95322 1.19510 0.93449 0.92977 0.93161 1.21606 1.00388 1.00586 0.92785 1.20893 0.93378 0.90992 0.98276 1.30510 1.04429 1.21321 1.20796 1.01451 0.73678 0.72535 0.73067 1.53069 1.80955 1.26426 1.32118 1.93608 1.46891 1.81011 1.73866 1.93605 1.58821 1.59128 1.83887 1.20898 0.98260 0.93019 0.91560 1.21524 0.96166 0.98567 0.98340 0.93120 0.94350 0.95802 0.94995 0.88195 0.92443 0.77789 0.85566 0.84004 0.84213 0.83767 0.75572 0.75018 0.83793 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.01 5.45 -26.74 -0.15 -3.15 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.19 11.30 55.43 0.63 -23.57 16 9 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -13.68 5.02 -56.33 -0.28 -13.96 16 14 C 0.52 9.71 6.31 -12.96 -0.08 9.63 16 15 O -0.55 -12.06 13.37 5.19 0.07 -11.99 16 16 C -0.16 -2.08 9.41 -37.50 -0.35 -2.44 16 17 C -0.08 -0.91 9.46 -37.15 -0.35 -1.26 16 18 C 0.01 0.10 5.87 -105.06 -0.62 -0.52 16 19 C -0.13 -1.22 9.41 -39.12 -0.37 -1.59 16 20 C -0.02 -0.13 9.50 -39.65 -0.38 -0.51 16 21 C -0.68 -5.54 5.95 -39.46 -0.23 -5.77 16 22 S 2.70 20.67 6.28 -107.50 -0.67 20.00 16 23 N -1.25 -4.68 9.55 60.35 0.58 -4.10 16 24 O -0.96 -10.48 17.27 -57.17 -0.99 -11.47 16 25 O -0.97 -10.37 17.27 -57.17 -0.99 -11.35 16 26 C -0.02 -0.15 9.50 -39.65 -0.38 -0.52 16 27 C -0.13 -1.12 9.80 -39.11 -0.38 -1.50 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 6.51 8.52 -40.82 -0.35 6.16 16 35 H 0.13 1.28 6.07 -52.49 -0.32 0.96 16 36 H 0.14 1.80 7.52 -52.49 -0.39 1.41 16 37 H 0.14 1.04 6.17 -52.48 -0.32 0.72 16 38 H 0.14 0.97 7.60 -52.49 -0.40 0.57 16 39 H 0.42 0.70 8.92 -34.47 -0.31 0.39 16 40 H 0.42 0.92 8.96 -34.47 -0.31 0.61 16 41 H 0.14 0.92 7.60 -52.49 -0.40 0.52 16 42 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -35.27 365.09 -9.71 -44.98 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.01 Total: 7.09 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.52 Total: -16.31 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.92 Total: -41.63 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.90 Total: -34.81 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 20.67 SS G_CDS: -0.67 Total: 20.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.27 -9.71 -44.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281654431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.674 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds