Wall clock time and date at job start Tue Mar 31 2020 21:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00471 * 2 1 4 4 N 1.46491 * 109.47627 * 124.99791 * 3 2 1 5 5 C 1.46500 * 119.99989 * 270.00234 * 4 3 2 6 6 C 1.50699 * 109.47281 * 269.99637 * 5 4 3 7 7 H 1.07993 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99884 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00285 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99696 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46935 * 120.00138 * 10 8 6 13 13 H 1.48503 * 109.47411 * 240.00309 * 10 8 6 14 14 C 1.34773 * 120.00261 * 90.00012 * 4 3 2 15 15 O 1.21281 * 120.00273 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99780 * 0.02562 * 14 4 3 17 17 O 1.42904 * 109.47261 * 180.02562 * 16 14 4 18 18 C 1.35895 * 117.00202 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.04251 * 179.97438 * 18 17 16 20 20 C 1.38142 * 119.99431 * 180.02562 * 19 18 17 21 21 C 1.38251 * 120.07778 * 0.26239 * 20 19 18 22 22 N 1.48019 * 119.95459 * 179.72171 * 21 20 19 23 23 O 1.21796 * 120.00027 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99663 * 179.97438 * 22 21 20 25 25 C 1.38473 * 120.08702 * 359.48449 * 21 20 19 26 26 F 1.35095 * 120.00135 * 180.23634 * 25 21 20 27 27 C 1.38388 * 120.00405 * 0.51149 * 25 21 20 28 28 H 1.07995 * 120.00136 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99572 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99572 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46709 * 4.99330 * 3 2 1 32 32 H 1.09004 * 109.46989 * 245.00326 * 3 2 1 33 33 H 1.09002 * 109.47449 * 30.00365 * 5 4 3 34 34 H 1.09007 * 109.46960 * 149.99554 * 5 4 3 35 35 H 0.97000 * 119.99869 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.46913 * 59.99851 * 16 14 4 37 37 H 1.08999 * 109.47186 * 300.00025 * 16 14 4 38 38 H 1.07999 * 120.00841 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.95749 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.04338 * 179.77075 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8650 2.4247 6 6 2.8444 3.3436 2.4803 7 1 3.3042 3.8368 1.6367 8 6 2.5185 4.0667 3.6081 9 7 1.9590 3.4660 4.6356 10 14 2.8730 5.8995 3.6771 11 1 3.5019 6.3304 2.4027 12 1 1.6028 6.6421 3.8777 13 1 3.7958 6.1831 4.8056 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6973 0.3182 -0.3482 17 8 6.0573 -0.1104 -0.2538 18 6 6.6182 -0.6345 -1.3752 19 6 7.9355 -1.0702 -1.3545 20 6 8.5050 -1.6023 -2.4951 21 6 7.7656 -1.6964 -3.6594 22 7 8.3804 -2.2613 -4.8817 23 8 9.5370 -2.6424 -4.8613 24 8 7.7295 -2.3450 -5.9078 25 6 6.4492 -1.2674 -3.6824 26 9 5.7268 -1.3646 -4.8199 27 6 5.8752 -0.7339 -2.5418 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.4888 1.6966 2.5459 34 1 3.0990 1.3603 3.2259 35 1 1.7302 3.9747 5.4291 36 1 4.6126 1.0951 -1.1080 37 1 4.0681 -0.5285 -0.6227 38 1 8.5156 -0.9933 -0.4467 39 1 9.5304 -1.9408 -2.4784 40 1 4.8497 -0.3958 -2.5601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293927171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:05 Heat of formation + Delta-G solvation = -61.336269 kcal Electronic energy + Delta-G solvation = -28305.342900 eV Core-core repulsion = 23811.905886 eV Total energy + Delta-G solvation = -4493.437014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.75554 -42.35915 -40.96817 -39.33423 -37.82764 -36.76318 -35.93172 -33.39818 -32.32131 -31.81365 -31.69843 -29.49108 -27.36884 -26.28229 -25.63938 -23.97130 -23.01874 -22.54843 -20.25635 -19.84323 -19.23623 -19.10056 -18.71666 -17.88611 -17.45934 -16.98261 -16.81633 -16.55321 -16.26060 -16.12322 -15.70976 -15.09263 -14.88105 -14.70328 -14.44886 -14.34794 -13.96294 -13.40563 -13.10412 -12.89145 -12.66962 -12.34344 -12.15876 -11.95914 -11.81350 -11.67484 -11.43772 -11.41643 -11.36511 -11.23056 -11.01727 -10.75922 -10.32679 -9.89803 -9.80441 -9.42718 -9.31699 -9.28556 -8.57118 -7.99370 -6.18267 -4.23995 -0.52951 0.22214 0.94903 1.04516 2.12504 2.31800 2.60780 2.95322 3.10936 3.20905 3.29346 3.32233 3.63748 3.74046 3.99615 4.06514 4.31902 4.50039 4.61082 4.63857 4.74845 4.79338 5.01881 5.04549 5.06568 5.15551 5.18286 5.31433 5.33690 5.56697 5.80483 5.94391 6.06871 6.46939 6.57660 6.68465 6.84525 7.21036 7.29517 7.37310 7.76700 8.03430 8.06213 8.60964 8.81560 9.41729 10.89971 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002437 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.200594 B =11487.972213 C =12361.158087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.178 4.178 3 C 0.131 3.869 4 N -0.585 5.585 5 C 0.249 3.751 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.508 3.492 15 O -0.512 6.512 16 C 0.028 3.972 17 O -0.262 6.262 18 C 0.223 3.777 19 C -0.158 4.158 20 C 0.011 3.989 21 C -0.133 4.133 22 N 0.039 4.961 23 O -0.163 6.163 24 O -0.158 6.158 25 C 0.218 3.782 26 F -0.099 7.099 27 C -0.258 4.258 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -10.093 -15.272 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C 0.008 3.992 4 N -0.318 5.318 5 C 0.130 3.870 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.292 3.708 15 O -0.387 6.387 16 C -0.050 4.050 17 O -0.171 6.171 18 C 0.173 3.827 19 C -0.177 4.177 20 C -0.008 4.008 21 C -0.218 4.218 22 N 0.557 4.443 23 O -0.377 6.377 24 O -0.373 6.373 25 C 0.197 3.803 26 F -0.077 7.077 27 C -0.279 4.279 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.980 -9.719 -13.803 17.600 hybrid contribution -0.218 0.854 -0.609 1.071 sum 4.762 -8.864 -14.412 17.577 Atomic orbital electron populations 1.23876 0.95801 1.02063 0.99209 1.23375 0.96587 0.98672 1.01141 1.20685 0.93392 0.96010 0.89152 1.48194 1.09493 1.59867 1.14216 1.19385 0.95676 0.93955 0.77951 1.21418 1.41049 0.93074 1.01505 0.92308 1.24932 0.94868 0.98928 0.95252 1.69933 1.41682 1.36244 1.05180 0.86428 0.78006 0.84672 0.78230 1.19775 1.20879 1.20767 1.19516 0.83272 0.79913 0.88088 1.90756 1.52127 1.54942 1.40914 1.23076 0.80516 1.01008 1.00373 1.86322 1.27936 1.72521 1.30350 1.19201 0.92002 0.86590 0.84940 1.20578 0.93149 1.03884 1.00132 1.20763 1.00684 0.91257 0.88055 1.21079 0.94624 1.17364 0.88749 1.43233 1.00722 0.98441 1.01903 1.94534 1.01287 1.50743 1.91149 1.94607 1.62584 1.59786 1.20368 1.16937 0.86493 0.93672 0.83195 1.91685 1.76468 1.92532 1.46972 1.21322 1.03824 1.11038 0.91672 0.88545 0.88051 0.87796 0.88697 0.91043 0.94437 0.93619 0.92593 0.88419 0.88575 0.81625 0.81230 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 14.32 29.01 0.42 -1.44 16 2 C -0.18 -2.07 9.74 -36.03 -0.35 -2.42 16 3 C 0.13 1.75 5.65 -5.20 -0.03 1.72 16 4 N -0.59 -10.82 2.44 -176.44 -0.43 -11.25 16 5 C 0.25 5.98 5.16 -5.19 -0.03 5.96 16 6 C -0.53 -14.10 9.39 -34.44 -0.32 -14.42 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 10 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.51 9.24 7.75 -10.99 -0.09 9.16 16 15 O -0.51 -11.95 16.08 -14.35 -0.23 -12.18 16 16 C 0.03 0.33 3.77 36.01 0.14 0.47 16 17 O -0.26 -3.28 9.67 -39.32 -0.38 -3.66 16 18 C 0.22 2.10 6.69 -39.23 -0.26 1.84 16 19 C -0.16 -1.24 9.99 -39.42 -0.39 -1.64 16 20 C 0.01 0.09 9.55 -39.61 -0.38 -0.29 16 21 C -0.13 -1.34 6.86 -79.85 -0.55 -1.89 16 22 N 0.04 0.49 4.45 34.01 0.15 0.64 16 23 O -0.16 -2.02 18.44 -29.46 -0.54 -2.56 16 24 O -0.16 -2.17 17.42 -29.46 -0.51 -2.68 16 25 C 0.22 2.12 7.25 -39.44 -0.29 1.84 16 26 F -0.10 -1.06 15.47 2.25 0.03 -1.03 16 27 C -0.26 -2.16 9.02 -39.36 -0.35 -2.52 16 28 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.10 1.08 7.84 -52.48 -0.41 0.67 16 30 H 0.10 1.09 7.83 -52.48 -0.41 0.68 16 31 H 0.09 1.35 7.72 -51.92 -0.40 0.95 16 32 H 0.07 0.71 6.44 -51.93 -0.33 0.37 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.10 0.89 6.92 -51.93 -0.36 0.53 16 37 H 0.10 0.83 7.29 -51.93 -0.38 0.45 16 38 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.17 0.94 7.61 -52.49 -0.40 0.54 16 40 H 0.17 1.03 6.30 -52.49 -0.33 0.70 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -33.27 364.38 -7.51 -40.78 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.22 Total: -2.79 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.58 Total: -2.02 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.46 Total: -35.21 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.67 Total: -21.08 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.03 Total: -1.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.27 -7.51 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293927171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.561 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds