Wall clock time and date at job start Tue Mar 31 2020 21:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00471 * 2 1 4 4 N 1.46491 * 109.47627 * 124.99791 * 3 2 1 5 5 C 1.46500 * 119.99989 * 270.00234 * 4 3 2 6 6 C 1.50699 * 109.47281 * 269.99637 * 5 4 3 7 7 H 1.07993 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99884 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00285 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99696 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46935 * 120.00138 * 10 8 6 13 13 H 1.48503 * 109.47411 * 240.00309 * 10 8 6 14 14 C 1.34773 * 120.00261 * 90.00012 * 4 3 2 15 15 O 1.21281 * 120.00273 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99780 * 0.02562 * 14 4 3 17 17 O 1.42904 * 109.47261 * 180.02562 * 16 14 4 18 18 C 1.35895 * 117.00202 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.04251 * 179.97438 * 18 17 16 20 20 C 1.38142 * 119.99431 * 180.02562 * 19 18 17 21 21 C 1.38251 * 120.07778 * 0.26239 * 20 19 18 22 22 N 1.48019 * 119.95459 * 179.72171 * 21 20 19 23 23 O 1.21796 * 120.00027 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99663 * 179.97438 * 22 21 20 25 25 C 1.38473 * 120.08702 * 359.48449 * 21 20 19 26 26 F 1.35095 * 120.00135 * 180.23634 * 25 21 20 27 27 C 1.38388 * 120.00405 * 0.51149 * 25 21 20 28 28 H 1.07995 * 120.00136 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99572 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99572 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46709 * 4.99330 * 3 2 1 32 32 H 1.09004 * 109.46989 * 245.00326 * 3 2 1 33 33 H 1.09002 * 109.47449 * 30.00365 * 5 4 3 34 34 H 1.09007 * 109.46960 * 149.99554 * 5 4 3 35 35 H 0.97000 * 119.99869 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.46913 * 59.99851 * 16 14 4 37 37 H 1.08999 * 109.47186 * 300.00025 * 16 14 4 38 38 H 1.07999 * 120.00841 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.95749 * 179.97438 * 20 19 18 40 40 H 1.07994 * 120.04338 * 179.77075 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8650 2.4247 6 6 2.8444 3.3436 2.4803 7 1 3.3042 3.8368 1.6367 8 6 2.5185 4.0667 3.6081 9 7 1.9590 3.4660 4.6356 10 14 2.8730 5.8995 3.6771 11 1 3.5019 6.3304 2.4027 12 1 1.6028 6.6421 3.8777 13 1 3.7958 6.1831 4.8056 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6973 0.3182 -0.3482 17 8 6.0573 -0.1104 -0.2538 18 6 6.6182 -0.6345 -1.3752 19 6 7.9355 -1.0702 -1.3545 20 6 8.5050 -1.6023 -2.4951 21 6 7.7656 -1.6964 -3.6594 22 7 8.3804 -2.2613 -4.8817 23 8 9.5370 -2.6424 -4.8613 24 8 7.7295 -2.3450 -5.9078 25 6 6.4492 -1.2674 -3.6824 26 9 5.7268 -1.3646 -4.8199 27 6 5.8752 -0.7339 -2.5418 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.4888 1.6966 2.5459 34 1 3.0990 1.3603 3.2259 35 1 1.7302 3.9747 5.4291 36 1 4.6126 1.0951 -1.1080 37 1 4.0681 -0.5285 -0.6227 38 1 8.5156 -0.9933 -0.4467 39 1 9.5304 -1.9408 -2.4784 40 1 4.8497 -0.3958 -2.5601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293927171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:04 Heat of formation + Delta-G solvation = -80.143945 kcal Electronic energy + Delta-G solvation = -28306.158462 eV Core-core repulsion = 23811.905886 eV Total energy + Delta-G solvation = -4494.252576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.50625 -43.24416 -41.83879 -40.59585 -38.70687 -37.69175 -37.28378 -35.14532 -33.72431 -32.60950 -32.39760 -30.80494 -28.81648 -27.18404 -26.91290 -25.10475 -24.19633 -23.55036 -21.28783 -20.63443 -20.33164 -19.94419 -19.74126 -18.76270 -18.66232 -18.37668 -17.90647 -17.63498 -17.23267 -17.10102 -16.96305 -16.27794 -15.98151 -15.74105 -15.63240 -15.13378 -14.98267 -14.45296 -14.39232 -14.14815 -13.71827 -13.65165 -13.36199 -13.02496 -12.90899 -12.86327 -12.77056 -12.62289 -12.49879 -12.33784 -12.33155 -12.25271 -12.18769 -11.66813 -10.77503 -10.66439 -10.54481 -10.33468 -10.05907 -9.57415 -8.24440 -6.38531 -1.36488 -0.40889 0.10606 0.23129 1.17124 1.36800 1.39050 1.44610 1.50411 1.62659 1.93809 2.34415 2.40706 2.54541 2.97892 3.06733 3.30971 3.40602 3.42665 3.78863 3.91578 4.01985 4.07910 4.11199 4.24776 4.36142 4.40099 4.43073 4.72733 4.83737 4.89736 4.97278 5.05131 5.19410 5.20818 5.45376 5.70568 5.71708 5.78348 5.92290 6.02595 6.40637 6.58314 6.71739 7.20522 7.35717 8.83161 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002437 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.200594 B =11487.972213 C =12361.158087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.126 3.874 4 N -0.590 5.590 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.284 1.284 14 C 0.498 3.502 15 O -0.578 6.578 16 C 0.040 3.960 17 O -0.288 6.288 18 C 0.216 3.784 19 C -0.151 4.151 20 C 0.023 3.977 21 C -0.142 4.142 22 N 0.040 4.960 23 O -0.158 6.158 24 O -0.200 6.200 25 C 0.208 3.792 26 F -0.108 7.108 27 C -0.243 4.243 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.027 0.973 34 H -0.001 1.001 35 H 0.267 0.733 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.182 0.818 39 H 0.193 0.807 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -9.899 -16.857 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C 0.004 3.996 4 N -0.321 5.321 5 C 0.143 3.857 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.210 1.210 14 C 0.286 3.714 15 O -0.458 6.458 16 C -0.037 4.037 17 O -0.198 6.198 18 C 0.167 3.833 19 C -0.170 4.170 20 C 0.005 3.995 21 C -0.228 4.228 22 N 0.553 4.447 23 O -0.376 6.376 24 O -0.406 6.406 25 C 0.187 3.813 26 F -0.085 7.085 27 C -0.262 4.262 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.045 0.955 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.199 0.801 39 H 0.210 0.790 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.001 -9.538 -15.506 18.879 hybrid contribution -0.222 0.749 -0.048 0.782 sum 4.779 -8.789 -15.554 18.494 Atomic orbital electron populations 1.24081 0.95812 1.02864 0.97821 1.23349 0.96796 0.98307 1.02290 1.20994 0.93043 0.96737 0.88811 1.48113 1.10945 1.59414 1.13635 1.18757 0.94173 0.92703 0.80025 1.21730 1.40507 0.94327 1.01456 0.92432 1.25821 0.94711 1.03550 0.94963 1.70050 1.42825 1.38029 1.05820 0.85406 0.78116 0.79295 0.78231 1.18878 1.19670 1.21027 1.20589 0.82213 0.78662 0.89976 1.90719 1.53787 1.57477 1.43788 1.23000 0.81129 1.03330 0.96248 1.86282 1.28217 1.73361 1.31940 1.19315 0.92519 0.87003 0.84457 1.20795 0.92824 1.02774 1.00594 1.20992 1.01411 0.90264 0.86876 1.21321 0.95182 1.18016 0.88278 1.43532 1.00616 0.98154 1.02425 1.94504 1.01564 1.50263 1.91294 1.94608 1.62805 1.61623 1.21575 1.17086 0.86421 0.94413 0.83419 1.91666 1.76624 1.92696 1.47556 1.21462 1.04712 1.09656 0.90399 0.86746 0.88377 0.86200 0.89998 0.86652 0.95541 0.98318 0.92430 0.84900 0.84649 0.80112 0.79007 0.79147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 14.32 67.78 0.97 -2.29 16 2 C -0.19 -3.88 9.74 25.64 0.25 -3.63 16 3 C 0.13 3.08 5.65 85.63 0.48 3.56 16 4 N -0.59 -21.57 2.44 -830.51 -2.03 -23.60 16 5 C 0.26 13.19 5.16 85.63 0.44 13.63 16 6 C -0.54 -29.26 9.39 25.60 0.24 -29.02 16 7 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.48 5.46 84.65 0.46 0.95 16 9 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 10 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.50 17.77 7.75 87.66 0.68 18.45 16 15 O -0.58 -27.73 16.08 16.00 0.26 -27.47 16 16 C 0.04 0.81 3.77 71.24 0.27 1.08 16 17 O -0.29 -6.44 9.67 -73.33 -0.71 -7.15 16 18 C 0.22 3.40 6.69 22.50 0.15 3.55 16 19 C -0.15 -1.93 9.99 22.37 0.22 -1.71 16 20 C 0.02 0.29 9.55 22.25 0.21 0.51 16 21 C -0.14 -2.59 6.86 36.43 0.25 -2.34 16 22 N 0.04 0.94 4.45 -46.32 -0.21 0.73 16 23 O -0.16 -3.73 18.44 18.89 0.35 -3.38 16 24 O -0.20 -5.47 17.42 18.89 0.33 -5.14 16 25 C 0.21 3.55 7.25 22.36 0.16 3.72 16 26 F -0.11 -2.15 15.47 44.97 0.70 -1.45 16 27 C -0.24 -3.18 9.02 22.41 0.20 -2.98 16 28 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.10 1.95 7.84 -2.91 -0.02 1.93 16 30 H 0.12 2.10 7.83 -2.91 -0.02 2.08 16 31 H 0.08 2.22 7.72 -2.38 -0.02 2.20 16 32 H 0.12 1.78 6.44 -2.38 -0.02 1.76 16 33 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 34 H 0.00 -0.08 7.42 -2.38 -0.02 -0.09 16 35 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.13 1.76 6.92 -2.39 -0.02 1.74 16 37 H 0.14 1.68 7.29 -2.39 -0.02 1.66 16 38 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.19 1.52 7.61 -2.91 -0.02 1.50 16 40 H 0.19 1.41 6.30 -2.91 -0.02 1.39 16 Total: -1.00 -77.35 364.38 7.09 -70.27 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.09 Total: 2.48 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.00 Total: 3.47 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -1.95 Total: -76.64 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: 0.23 Total: -43.14 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.70 Total: -1.45 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.35 7.09 -70.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293927171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.876 kcal (2) G-P(sol) polarization free energy of solvation -77.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds