Wall clock time and date at job start Tue Mar 31 2020 20:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30124 * 124.94103 * 2 1 4 4 C 1.35782 * 109.66163 * 179.97438 * 3 2 1 5 5 C 1.39771 * 133.50852 * 180.02562 * 4 3 2 6 6 C 1.38034 * 119.72237 * 179.97438 * 5 4 3 7 7 O 1.35973 * 119.79345 * 179.97438 * 6 5 4 8 8 S 1.52198 * 114.00081 * 90.00432 * 7 6 5 9 9 O 1.42109 * 104.27456 * 318.92874 * 8 7 6 10 10 O 1.42095 * 104.28043 * 191.07022 * 8 7 6 11 11 C 1.81400 * 104.44877 * 74.99575 * 8 7 6 12 12 C 1.53006 * 109.47145 * 179.97438 * 11 8 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.47055 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00258 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99506 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00308 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46931 * 89.99338 * 18 16 14 20 20 H 1.48500 * 109.46738 * 209.99579 * 18 16 14 21 21 H 1.48501 * 109.46755 * 329.99324 * 18 16 14 22 22 C 1.39231 * 120.40683 * 0.27792 * 6 5 4 23 23 C 1.37780 * 120.40593 * 359.45764 * 22 6 5 24 24 C 1.38810 * 119.90209 * 0.52294 * 23 22 6 25 25 N 1.35993 * 124.95050 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.35499 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47049 * 90.02135 * 1 2 3 28 28 H 1.09005 * 109.46797 * 210.01791 * 1 2 3 29 29 H 1.09001 * 109.47550 * 330.01765 * 1 2 3 30 30 H 1.07994 * 120.13802 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.46713 * 60.00367 * 11 8 7 32 32 H 1.08993 * 109.47294 * 299.99900 * 11 8 7 33 33 H 1.09001 * 109.46801 * 300.00406 * 12 11 8 34 34 H 1.09001 * 109.46998 * 60.00003 * 12 11 8 35 35 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 37 37 H 0.96999 * 119.99910 * 180.02562 * 17 16 14 38 38 H 1.07998 * 119.79026 * 179.69839 * 22 6 5 39 39 H 1.08002 * 120.04759 * 180.25055 * 23 22 6 40 40 H 1.08997 * 109.47474 * 90.03109 * 26 25 2 41 41 H 1.09004 * 109.47064 * 210.03097 * 26 25 2 42 42 H 1.09006 * 109.47235 * 330.02879 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0667 0.0000 4 6 3.5621 0.7089 0.0006 5 6 4.7575 1.4332 0.0013 6 6 5.9640 0.7626 0.0023 7 8 7.1278 1.4658 0.0024 8 16 7.6570 1.7866 1.3929 9 8 6.4989 2.1447 2.1346 10 8 8.6991 2.7250 1.1634 11 6 8.3362 0.2151 1.9925 12 6 8.9065 0.4095 3.3989 13 6 9.4799 -0.9159 3.9044 14 6 10.0411 -0.7245 5.2898 15 1 9.9939 0.2454 5.7624 16 6 10.6158 -1.7876 5.9538 17 7 10.6737 -2.9686 5.3781 18 14 11.3120 -1.5502 7.6709 19 1 10.2519 -1.8164 8.6760 20 1 12.4414 -2.4913 7.8814 21 1 11.7964 -0.1544 7.8200 22 6 5.9966 -0.6293 -0.0032 23 6 4.8250 -1.3543 0.0015 24 6 3.6034 -0.6952 0.0008 25 7 2.2861 -1.1147 0.0005 26 6 1.8165 -2.5024 0.0016 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8899 0.5141 29 1 -0.3634 0.8901 0.5135 30 1 4.7373 2.5129 0.0010 31 1 9.1288 -0.1174 1.3222 32 1 7.5459 -0.5350 2.0210 33 1 9.6970 1.1595 3.3700 34 1 8.1143 0.7423 4.0695 35 1 8.6898 -1.6661 3.9332 36 1 10.2723 -1.2482 3.2337 37 1 11.0776 -3.7166 5.8453 38 1 6.9462 -1.1438 -0.0073 39 1 4.8571 -2.4339 0.0013 40 1 1.7002 -2.8475 -1.0257 41 1 2.5431 -3.1313 0.5162 42 1 0.8569 -2.5609 0.5154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297128958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:43 Heat of formation + Delta-G solvation = -40.211992 kcal Electronic energy + Delta-G solvation = -26712.808708 eV Core-core repulsion = 22786.500887 eV Total energy + Delta-G solvation = -3926.307821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61098 -40.68738 -37.04386 -36.79270 -35.86720 -34.73638 -34.62880 -32.23143 -31.63796 -30.64595 -28.14092 -27.72673 -27.30299 -23.93746 -23.23282 -22.72322 -20.95339 -20.54372 -20.14149 -18.51877 -17.75094 -17.51436 -17.12214 -16.52481 -16.42241 -16.09950 -15.48744 -15.04191 -14.51483 -14.47670 -14.24849 -14.02113 -13.87925 -13.68547 -13.39395 -13.11795 -12.98018 -12.84396 -12.62290 -12.56075 -12.30997 -12.00579 -11.89309 -11.81322 -11.73580 -11.44444 -11.24702 -10.92474 -10.85408 -10.72593 -10.40238 -10.29951 -9.95254 -9.40741 -9.14902 -8.61616 -8.44736 -8.41192 -6.06472 -4.09150 0.18640 0.55829 1.08055 2.11282 2.26261 2.35685 3.30173 3.36233 3.37371 3.40756 3.69445 3.82560 4.02302 4.19710 4.21634 4.42111 4.50030 4.59623 4.67552 4.76332 4.83533 4.87980 4.96158 5.00021 5.11563 5.15016 5.23523 5.30169 5.34746 5.49135 5.75774 5.86409 5.90399 5.95246 6.08577 6.26651 6.43311 6.47899 6.69012 6.86682 7.50120 7.56326 7.66404 7.91827 8.32433 8.97031 9.55516 11.04824 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.002863 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.644989 B = 9776.762875 C =11042.375086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.287 3.713 3 N -0.486 5.486 4 C 0.063 3.937 5 C -0.030 4.030 6 C 0.062 3.938 7 O -0.665 6.665 8 S 2.580 3.420 9 O -0.954 6.954 10 O -0.933 6.933 11 C -0.632 4.632 12 C -0.103 4.103 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.113 4.113 23 C -0.086 4.086 24 C 0.055 3.945 25 N -0.492 5.492 26 C 0.076 3.924 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.261 0.739 38 H 0.153 0.847 39 H 0.140 0.860 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.285 -0.768 -15.488 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.021 3.979 3 N -0.206 5.206 4 C -0.056 4.056 5 C -0.051 4.051 6 C 0.018 3.982 7 O -0.623 6.623 8 S 2.679 3.321 9 O -0.952 6.952 10 O -0.931 6.931 11 C -0.761 4.761 12 C -0.142 4.142 13 C -0.008 4.008 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.135 4.135 23 C -0.106 4.106 24 C -0.055 4.055 25 N -0.182 5.182 26 C -0.066 4.066 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.165 0.835 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.623 0.535 -15.688 26.720 hybrid contribution 1.139 -1.480 1.079 2.157 sum -20.484 -0.945 -14.609 25.178 Atomic orbital electron populations 1.20416 0.83925 1.04912 1.04315 1.23735 0.95922 0.80452 0.97742 1.70428 1.00427 1.27264 1.22506 1.18550 0.91700 0.89880 1.05439 1.20225 0.87859 1.01023 0.96032 1.17442 0.81362 0.89362 1.10029 1.85757 1.43278 1.75012 1.58281 1.05916 0.75128 0.77994 0.73088 1.93628 1.47467 1.82467 1.71653 1.93608 1.58395 1.58577 1.82538 1.30817 1.12978 1.21430 1.10885 1.21488 1.00201 1.03838 0.88718 1.19065 0.96002 0.89742 0.95947 1.21258 1.38363 0.96074 1.00662 0.92335 1.25016 0.95959 0.95199 0.98202 1.69957 1.45066 1.00639 1.37849 0.86553 0.78697 0.78145 0.84411 1.20592 1.21177 1.19711 1.21076 0.99675 0.91423 1.01286 1.19714 0.87862 0.99949 1.03125 1.18951 0.85549 0.95092 1.05870 1.45228 1.04416 1.07865 1.60696 1.22059 1.01987 0.78864 1.03728 0.89183 0.90050 0.88281 0.83511 0.84754 0.85178 0.91389 0.91419 0.96127 0.96032 0.92926 0.82985 0.84262 0.90400 0.89269 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.17 36.01 0.37 0.02 16 2 C 0.29 2.73 7.85 -154.85 -1.22 1.51 16 3 N -0.49 -6.47 11.27 -8.24 -0.09 -6.57 16 4 C 0.06 0.88 7.22 -84.71 -0.61 0.27 16 5 C -0.03 -0.43 9.07 -39.08 -0.35 -0.78 16 6 C 0.06 0.87 4.79 -39.29 -0.19 0.68 16 7 O -0.66 -9.87 10.04 -51.98 -0.52 -10.39 16 8 S 2.58 42.83 5.17 -107.50 -0.56 42.27 16 9 O -0.95 -17.67 16.25 -67.04 -1.09 -18.76 16 10 O -0.93 -18.13 18.09 -67.04 -1.21 -19.35 16 11 C -0.63 -10.12 5.46 37.16 0.20 -9.92 16 12 C -0.10 -2.12 5.16 -26.73 -0.14 -2.26 16 13 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 14 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.11 -1.29 8.43 -39.38 -0.33 -1.63 16 23 C -0.09 -0.87 10.03 -39.54 -0.40 -1.26 16 24 C 0.06 0.64 6.87 -83.92 -0.58 0.06 16 25 N -0.49 -4.31 3.21 -118.47 -0.38 -4.69 16 26 C 0.08 0.29 10.96 59.85 0.66 0.95 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.17 7.01 -51.93 -0.36 -0.19 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.13 1.88 8.14 -51.92 -0.42 1.45 16 32 H 0.13 1.83 6.62 -51.93 -0.34 1.49 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.15 1.37 7.51 -52.49 -0.39 0.97 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.15 6.99 -51.93 -0.36 -0.21 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -38.29 367.33 -11.40 -49.68 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.66 Total: -3.30 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -3.14 Total: -25.28 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.26 Total: -36.97 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.82 Total: -48.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 42.83 SS G_CDS: -0.56 Total: 42.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.29 -11.40 -49.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297128958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.471 kcal (2) G-P(sol) polarization free energy of solvation -38.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds