Wall clock time and date at job start Tue Mar 31 2020 20:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30124 * 124.94103 * 2 1 4 4 C 1.35782 * 109.66163 * 179.97438 * 3 2 1 5 5 C 1.39771 * 133.50852 * 180.02562 * 4 3 2 6 6 C 1.38034 * 119.72237 * 179.97438 * 5 4 3 7 7 O 1.35973 * 119.79345 * 179.97438 * 6 5 4 8 8 S 1.52198 * 114.00081 * 90.00432 * 7 6 5 9 9 O 1.42109 * 104.27456 * 318.92874 * 8 7 6 10 10 O 1.42095 * 104.28043 * 191.07022 * 8 7 6 11 11 C 1.81400 * 104.44877 * 74.99575 * 8 7 6 12 12 C 1.53006 * 109.47145 * 179.97438 * 11 8 7 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.47055 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00258 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99506 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00308 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46931 * 89.99338 * 18 16 14 20 20 H 1.48500 * 109.46738 * 209.99579 * 18 16 14 21 21 H 1.48501 * 109.46755 * 329.99324 * 18 16 14 22 22 C 1.39231 * 120.40683 * 0.27792 * 6 5 4 23 23 C 1.37780 * 120.40593 * 359.45764 * 22 6 5 24 24 C 1.38810 * 119.90209 * 0.52294 * 23 22 6 25 25 N 1.35993 * 124.95050 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.35499 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47049 * 90.02135 * 1 2 3 28 28 H 1.09005 * 109.46797 * 210.01791 * 1 2 3 29 29 H 1.09001 * 109.47550 * 330.01765 * 1 2 3 30 30 H 1.07994 * 120.13802 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.46713 * 60.00367 * 11 8 7 32 32 H 1.08993 * 109.47294 * 299.99900 * 11 8 7 33 33 H 1.09001 * 109.46801 * 300.00406 * 12 11 8 34 34 H 1.09001 * 109.46998 * 60.00003 * 12 11 8 35 35 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 37 37 H 0.96999 * 119.99910 * 180.02562 * 17 16 14 38 38 H 1.07998 * 119.79026 * 179.69839 * 22 6 5 39 39 H 1.08002 * 120.04759 * 180.25055 * 23 22 6 40 40 H 1.08997 * 109.47474 * 90.03109 * 26 25 2 41 41 H 1.09004 * 109.47064 * 210.03097 * 26 25 2 42 42 H 1.09006 * 109.47235 * 330.02879 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0667 0.0000 4 6 3.5621 0.7089 0.0006 5 6 4.7575 1.4332 0.0013 6 6 5.9640 0.7626 0.0023 7 8 7.1278 1.4658 0.0024 8 16 7.6570 1.7866 1.3929 9 8 6.4989 2.1447 2.1346 10 8 8.6991 2.7250 1.1634 11 6 8.3362 0.2151 1.9925 12 6 8.9065 0.4095 3.3989 13 6 9.4799 -0.9159 3.9044 14 6 10.0411 -0.7245 5.2898 15 1 9.9939 0.2454 5.7624 16 6 10.6158 -1.7876 5.9538 17 7 10.6737 -2.9686 5.3781 18 14 11.3120 -1.5502 7.6709 19 1 10.2519 -1.8164 8.6760 20 1 12.4414 -2.4913 7.8814 21 1 11.7964 -0.1544 7.8200 22 6 5.9966 -0.6293 -0.0032 23 6 4.8250 -1.3543 0.0015 24 6 3.6034 -0.6952 0.0008 25 7 2.2861 -1.1147 0.0005 26 6 1.8165 -2.5024 0.0016 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8899 0.5141 29 1 -0.3634 0.8901 0.5135 30 1 4.7373 2.5129 0.0010 31 1 9.1288 -0.1174 1.3222 32 1 7.5459 -0.5350 2.0210 33 1 9.6970 1.1595 3.3700 34 1 8.1143 0.7423 4.0695 35 1 8.6898 -1.6661 3.9332 36 1 10.2723 -1.2482 3.2337 37 1 11.0776 -3.7166 5.8453 38 1 6.9462 -1.1438 -0.0073 39 1 4.8571 -2.4339 0.0013 40 1 1.7002 -2.8475 -1.0257 41 1 2.5431 -3.1313 0.5162 42 1 0.8569 -2.5609 0.5154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297128958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:42 Heat of formation + Delta-G solvation = -66.079774 kcal Electronic energy + Delta-G solvation = -26713.930420 eV Core-core repulsion = 22786.500887 eV Total energy + Delta-G solvation = -3927.429532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40272 -41.78327 -38.40580 -37.74561 -37.28447 -36.49524 -35.35499 -34.19717 -32.24823 -31.50753 -29.75350 -28.65222 -27.84766 -25.75916 -24.25879 -23.62658 -22.48134 -21.54811 -21.12641 -19.67910 -18.93438 -18.70127 -18.36434 -17.92729 -17.38188 -17.07305 -16.76380 -16.45249 -16.18509 -15.65358 -15.29225 -14.81298 -14.56460 -14.41711 -14.22874 -14.14302 -14.09326 -13.94896 -13.73887 -13.57010 -13.49368 -13.35737 -13.29660 -13.11268 -13.02206 -12.76732 -12.67480 -12.59133 -12.30650 -12.15147 -11.74885 -11.48113 -11.36284 -11.12805 -11.04810 -10.55827 -9.48162 -9.30651 -8.21780 -6.31872 -1.08590 -0.28423 0.07719 1.02997 1.40938 1.41379 1.52783 1.53712 1.60086 2.40031 2.44551 2.51432 2.83579 3.06458 3.12051 3.33615 3.57786 3.70618 3.76964 3.78757 3.94298 4.05338 4.11040 4.29116 4.37954 4.42839 4.47918 4.61572 4.67494 4.71422 4.77401 4.87361 4.88463 4.99493 5.04881 5.06035 5.17916 5.22943 5.46846 5.58769 5.65009 5.80742 6.07353 6.21254 6.72723 6.83118 7.37025 8.89660 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.002863 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.644989 B = 9776.762875 C =11042.375086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.293 3.707 3 N -0.538 5.538 4 C 0.033 3.967 5 C -0.058 4.058 6 C 0.039 3.961 7 O -0.658 6.658 8 S 2.601 3.399 9 O -0.978 6.978 10 O -0.967 6.967 11 C -0.623 4.623 12 C -0.104 4.104 13 C 0.033 3.967 14 C -0.552 4.552 15 H 0.058 0.942 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.123 4.123 23 C -0.071 4.071 24 C 0.048 3.952 25 N -0.486 5.486 26 C 0.064 3.936 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.806 -3.070 -15.482 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.028 3.972 3 N -0.259 5.259 4 C -0.085 4.085 5 C -0.081 4.081 6 C -0.004 4.004 7 O -0.617 6.617 8 S 2.700 3.300 9 O -0.977 6.977 10 O -0.965 6.965 11 C -0.753 4.753 12 C -0.143 4.143 13 C -0.006 4.006 14 C -0.590 4.590 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.785 3.215 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.144 4.144 23 C -0.092 4.092 24 C -0.064 4.064 25 N -0.175 5.175 26 C -0.076 4.076 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.150 0.850 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.196 0.804 39 H 0.197 0.803 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.163 -1.775 -15.683 28.029 hybrid contribution 1.417 -0.847 0.999 1.930 sum -21.746 -2.621 -14.683 26.369 Atomic orbital electron populations 1.20679 0.80379 1.06353 1.05981 1.24672 0.97666 0.79938 0.94950 1.70396 1.00627 1.29669 1.25230 1.18801 0.91899 0.91492 1.06342 1.20289 0.89022 1.00742 0.98005 1.17787 0.80513 0.90516 1.11618 1.85714 1.43856 1.75465 1.56670 1.05235 0.74141 0.77670 0.72904 1.93590 1.48360 1.83048 1.72666 1.93557 1.59468 1.60180 1.83276 1.30698 1.14332 1.21709 1.08543 1.21322 1.00343 1.01330 0.91314 1.18958 0.95156 0.91683 0.94771 1.21730 1.38766 0.96270 1.02253 0.92338 1.25880 0.96244 0.94912 1.02297 1.70056 1.45787 1.01391 1.39535 0.85518 0.78172 0.78309 0.79515 1.19719 1.20508 1.19136 1.21413 1.01482 0.90173 1.01322 1.20157 0.86678 1.01699 1.00635 1.19223 0.87352 0.94298 1.05509 1.45575 1.03144 1.09581 1.59227 1.22510 1.03418 0.76078 1.05577 0.87207 0.86866 0.88531 0.84975 0.82337 0.82879 0.91395 0.91358 0.97364 0.97493 0.92619 0.80420 0.80307 0.88486 0.88396 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.17 71.24 0.72 0.25 16 2 C 0.29 5.15 7.85 137.93 1.08 6.23 16 3 N -0.54 -14.64 11.27 -179.99 -2.03 -16.67 16 4 C 0.03 0.95 7.22 39.45 0.28 1.24 16 5 C -0.06 -1.80 9.07 22.59 0.20 -1.60 16 6 C 0.04 1.12 4.79 22.46 0.11 1.23 16 7 O -0.66 -19.88 10.04 -62.33 -0.63 -20.51 16 8 S 2.60 87.52 5.17 -56.49 -0.29 87.23 16 9 O -0.98 -37.44 16.25 -118.57 -1.93 -39.37 16 10 O -0.97 -38.36 18.09 -118.57 -2.15 -40.51 16 11 C -0.62 -19.38 5.46 71.98 0.39 -18.99 16 12 C -0.10 -4.25 5.16 30.60 0.16 -4.10 16 13 C 0.03 1.65 4.97 29.85 0.15 1.80 16 14 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.01 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 18 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C -0.12 -2.61 8.43 22.40 0.19 -2.42 16 23 C -0.07 -1.27 10.03 22.30 0.22 -1.05 16 24 C 0.05 1.04 6.87 38.81 0.27 1.31 16 25 N -0.49 -7.34 3.21 -528.73 -1.70 -9.03 16 26 C 0.06 0.24 10.96 127.77 1.40 1.64 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.11 -0.02 7.01 -2.38 -0.02 -0.03 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.16 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.15 4.05 6.62 -2.39 -0.02 4.04 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.18 2.72 7.51 -2.91 -0.02 2.69 16 39 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.12 -0.17 6.99 -2.38 -0.02 -0.18 16 Total: -1.00 -85.77 367.33 0.51 -85.26 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.03 Total: 6.72 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 5.88 Total: -44.67 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.44 Total: -80.14 kcal Atomic # 8 Polarization: -95.69 SS G_CDS: -4.70 Total: -100.38 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 87.52 SS G_CDS: -0.29 Total: 87.23 kcal Total: -85.77 0.51 -85.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297128958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.176 kcal (2) G-P(sol) polarization free energy of solvation -85.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds