Wall clock time and date at job start Tue Mar 31 2020 21:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99729 * 2 1 4 4 N 1.46496 * 109.47106 * 124.99600 * 3 2 1 5 5 C 1.34776 * 120.00006 * 179.97438 * 4 3 2 6 6 O 1.21559 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.47837 * 120.00306 * 179.97438 * 5 4 3 8 8 C 1.39600 * 120.14390 * 359.72511 * 7 5 4 9 9 C 1.37938 * 119.85347 * 179.74325 * 8 7 5 10 10 C 1.38386 * 120.14444 * 0.53229 * 9 8 7 11 11 C 1.38341 * 120.29258 * 359.74847 * 10 9 8 12 12 S 1.76195 * 119.92880 * 179.97438 * 11 10 9 13 13 O 1.42102 * 106.40035 * 23.51340 * 12 11 10 14 14 O 1.42097 * 106.40212 * 156.43645 * 12 11 10 15 15 N 1.65597 * 107.21774 * 269.97797 * 12 11 10 16 16 C 1.46505 * 120.00458 * 64.99623 * 15 12 11 17 17 C 1.52998 * 109.47377 * 165.00061 * 16 15 12 18 18 C 1.50699 * 109.47183 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00147 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99831 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99757 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46953 * 89.99689 * 22 20 18 24 24 H 1.48499 * 109.46909 * 209.99677 * 22 20 18 25 25 H 1.48499 * 109.46831 * 329.99401 * 22 20 18 26 26 C 1.37984 * 120.14190 * 359.97178 * 11 10 9 27 27 H 1.07997 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99479 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00202 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46953 * 244.99339 * 3 2 1 31 31 H 1.09000 * 109.47318 * 4.98937 * 3 2 1 32 32 H 0.96998 * 120.00192 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.06932 * 0.02562 * 8 7 5 34 34 H 1.07998 * 119.92994 * 180.26135 * 9 8 7 35 35 H 1.08001 * 119.85419 * 179.75766 * 10 9 8 36 36 H 0.97010 * 119.99946 * 244.99833 * 15 12 11 37 37 H 1.08995 * 109.47165 * 285.00430 * 16 15 12 38 38 H 1.08998 * 109.46465 * 45.00013 * 16 15 12 39 39 H 1.09005 * 109.47406 * 300.00412 * 17 16 15 40 40 H 1.08998 * 109.46941 * 60.00168 * 17 16 15 41 41 H 0.97003 * 119.99955 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.06773 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 3.7788 2.4088 1.3329 6 8 3.7148 3.3578 0.5760 7 6 4.7171 2.4362 2.4750 8 6 4.7882 1.3509 3.3501 9 6 5.6697 1.3806 4.4107 10 6 6.4745 2.4877 4.6147 11 6 6.4048 3.5691 3.7546 12 16 7.4334 4.9740 4.0237 13 8 8.5464 4.5175 4.7800 14 8 7.5618 5.6240 2.7667 15 7 6.5966 6.0135 5.0043 16 6 6.2677 5.6211 6.3769 17 6 5.8428 6.8567 7.1728 18 6 5.5050 6.4530 8.5849 19 1 5.5858 5.4187 8.8848 20 6 5.0929 7.4043 9.4939 21 7 4.9950 8.6639 9.1289 22 14 4.6749 6.9039 11.2446 23 1 5.8948 6.9857 12.0873 24 1 3.6370 7.8176 11.7860 25 1 4.1606 5.5109 11.2518 26 6 5.5314 3.5497 2.6865 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6214 1.4026 -0.9313 31 1 1.3585 2.1317 0.0894 32 1 3.0450 0.5746 1.7352 33 1 4.1578 0.4880 3.1943 34 1 5.7287 0.5398 5.0860 35 1 7.1601 2.5076 5.4489 36 1 6.3242 6.8825 4.6698 37 1 5.4509 4.8995 6.3627 38 1 7.1426 5.1703 6.8454 39 1 6.6596 7.5784 7.1871 40 1 4.9679 7.3075 6.7043 41 1 4.7047 9.3331 9.7683 42 1 5.4783 4.3943 2.0156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343975377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:59 Heat of formation + Delta-G solvation = -97.272293 kcal Electronic energy + Delta-G solvation = -25949.867222 eV Core-core repulsion = 22021.085081 eV Total energy + Delta-G solvation = -3928.782141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40964 -39.53225 -38.41815 -37.04937 -36.99756 -36.90763 -34.71982 -34.12645 -32.38253 -32.30001 -31.00255 -27.54776 -26.41073 -24.91082 -24.13815 -22.95211 -22.04015 -21.23789 -20.46062 -19.52189 -18.73951 -18.16996 -17.65546 -17.53912 -17.17967 -17.03098 -16.61761 -16.45808 -15.97524 -15.74603 -15.49281 -15.39262 -15.04261 -14.86544 -14.42439 -14.29381 -13.95889 -13.46103 -13.40287 -13.39568 -13.30770 -13.25976 -13.20589 -12.96989 -12.84345 -12.45083 -12.34077 -12.08335 -11.93421 -11.49069 -11.34110 -11.29653 -10.69674 -10.61013 -10.56985 -10.34518 -10.27757 -10.04788 -8.18697 -6.29599 -0.72391 -0.47698 -0.14345 1.13351 1.45327 1.46444 1.54520 1.57045 1.99249 2.17354 2.44595 2.48266 2.72466 3.16562 3.23531 3.52976 3.69746 3.77340 3.87847 4.00247 4.13929 4.20105 4.24555 4.38893 4.53308 4.56099 4.69999 4.73189 4.83412 4.88881 4.97639 4.99710 5.00553 5.07843 5.20700 5.51797 5.61241 5.63399 5.64690 5.75725 5.82406 5.99954 6.23093 6.37153 6.86671 7.02917 7.39857 8.93508 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002691 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.125126 B =10401.037067 C =11721.301487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.181 4.181 3 C 0.143 3.857 4 N -0.705 5.705 5 C 0.557 3.443 6 O -0.579 6.579 7 C -0.171 4.171 8 C -0.017 4.017 9 C -0.133 4.133 10 C -0.004 4.004 11 C -0.685 4.685 12 S 2.709 3.291 13 O -0.979 6.979 14 O -0.990 6.990 15 N -1.113 6.113 16 C 0.132 3.868 17 C 0.018 3.982 18 C -0.540 4.540 19 H 0.073 0.927 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.967 3.033 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.257 1.257 26 C 0.018 3.982 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.418 0.582 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.158 0.842 36 H 0.421 0.579 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.000 1.000 40 H 0.005 0.995 41 H 0.263 0.737 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -24.137 -14.239 28.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.020 3.980 4 N -0.358 5.358 5 C 0.345 3.655 6 O -0.460 6.460 7 C -0.175 4.175 8 C -0.036 4.036 9 C -0.151 4.151 10 C -0.023 4.023 11 C -0.774 4.774 12 S 2.801 3.199 13 O -0.969 6.969 14 O -0.980 6.980 15 N -0.874 5.874 16 C 0.007 3.993 17 C -0.021 4.021 18 C -0.579 4.579 19 H 0.091 0.909 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.791 3.209 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.181 1.181 26 C -0.002 4.002 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.257 0.743 33 H 0.197 0.803 34 H 0.201 0.799 35 H 0.175 0.825 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.018 0.982 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.524 -23.369 -15.002 28.314 hybrid contribution -0.827 0.474 0.802 1.246 sum -6.351 -22.895 -14.200 27.679 Atomic orbital electron populations 1.24202 0.95757 1.03276 0.96408 1.22928 0.96272 0.97217 1.03512 1.20509 0.91463 0.97069 0.88974 1.45740 1.39692 1.19191 1.31150 1.18390 0.80341 0.82596 0.84185 1.90794 1.69631 1.37090 1.48451 1.20025 1.00956 0.97644 0.98896 1.22059 0.94680 0.96166 0.90646 1.21752 0.95322 0.99259 0.98807 1.21600 0.94733 0.90925 0.95057 1.30700 1.19440 1.20397 1.06900 1.01120 0.73581 0.73254 0.71905 1.93545 1.49060 1.82329 1.71970 1.93544 1.86416 1.75146 1.42903 1.55391 1.77108 1.30656 1.24196 1.21371 1.00147 0.98874 0.78958 1.19175 0.95528 0.93024 0.94368 1.21575 1.44988 0.95136 0.96186 0.90915 1.25975 0.95409 0.94855 1.03630 1.70101 1.48338 1.02105 1.36773 0.85421 0.77902 0.78674 0.78896 1.20045 1.21270 1.18063 1.20959 0.89064 0.97492 0.92709 0.88535 0.85977 0.84651 0.91207 0.92003 0.74318 0.80286 0.79893 0.82452 0.74396 0.91018 0.90785 0.98180 0.97663 0.92822 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 14.32 67.78 0.97 -0.09 16 2 C -0.18 -1.34 9.63 25.65 0.25 -1.09 16 3 C 0.14 1.94 6.11 85.64 0.52 2.46 16 4 N -0.70 -9.89 5.50 -469.71 -2.58 -12.47 16 5 C 0.56 12.95 7.77 86.78 0.67 13.62 16 6 O -0.58 -18.94 16.35 -3.90 -0.06 -19.01 16 7 C -0.17 -3.71 5.87 -20.09 -0.12 -3.83 16 8 C -0.02 -0.22 9.54 22.53 0.21 0.00 16 9 C -0.13 -1.78 10.03 22.23 0.22 -1.55 16 10 C 0.00 -0.08 9.52 22.33 0.21 0.14 16 11 C -0.69 -18.25 5.94 22.23 0.13 -18.12 16 12 S 2.71 86.61 5.74 -56.49 -0.32 86.28 16 13 O -0.98 -34.92 16.74 -128.00 -2.14 -37.06 16 14 O -0.99 -36.35 17.27 -128.00 -2.21 -38.56 16 15 N -1.11 -37.63 6.00 -187.49 -1.12 -38.76 16 16 C 0.13 5.00 6.16 86.38 0.53 5.54 16 17 C 0.02 0.88 5.11 29.85 0.15 1.04 16 18 C -0.54 -28.84 9.11 25.60 0.23 -28.60 16 19 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 20 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 21 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 22 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 26 C 0.02 0.50 9.07 22.53 0.20 0.71 16 27 H 0.10 0.74 7.84 -2.91 -0.02 0.72 16 28 H 0.12 0.41 8.06 -2.91 -0.02 0.39 16 29 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 32 H 0.42 2.63 6.50 -92.71 -0.60 2.03 16 33 H 0.18 0.50 6.41 -2.91 -0.02 0.48 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.16 2.95 7.60 -2.91 -0.02 2.93 16 36 H 0.42 13.75 8.65 -96.73 -0.84 12.91 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.74 7.75 -2.39 -0.02 2.72 16 39 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 41 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.13 4.09 7.20 -2.91 -0.02 4.07 16 Total: -1.00 -80.45 377.94 -1.85 -82.31 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -0.38 Total: 17.22 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.66 Total: -29.37 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -3.42 Total: -106.23 kcal Atomic # 8 Polarization: -90.21 SS G_CDS: -4.42 Total: -94.63 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 86.61 SS G_CDS: -0.32 Total: 86.28 kcal Total: -80.45 -1.85 -82.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343975377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.965 kcal (2) G-P(sol) polarization free energy of solvation -80.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds