Wall clock time and date at job start Tue Mar 31 2020 20:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99947 * 2 1 4 4 O 1.20827 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00028 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47214 * 180.02562 * 5 3 2 7 7 C 1.37101 * 120.00190 * 272.32276 * 6 5 3 8 8 H 1.07997 * 119.99498 * 50.04727 * 7 6 5 9 9 C 1.38951 * 120.00336 * 230.04746 * 7 6 5 10 10 N 1.31410 * 120.00054 * 199.64681 * 9 7 6 11 11 Si 1.86805 * 119.99763 * 19.65221 * 9 7 6 12 12 H 1.48503 * 109.47251 * 92.13015 * 11 9 7 13 13 H 1.48491 * 109.47062 * 212.12859 * 11 9 7 14 14 H 1.48500 * 109.47145 * 332.13102 * 11 9 7 15 15 C 1.34778 * 120.00176 * 92.32235 * 6 5 3 16 16 O 1.21289 * 119.99885 * 3.86895 * 15 6 5 17 17 C 1.50703 * 120.00101 * 183.86951 * 15 6 5 18 18 H 1.09002 * 109.59466 * 308.35171 * 17 15 6 19 19 C 1.53023 * 109.59530 * 188.04834 * 17 15 6 20 20 C 1.53145 * 109.44936 * 188.84337 * 19 17 15 21 21 C 1.53284 * 108.99660 * 70.38251 * 20 19 17 22 22 C 1.50998 * 108.58212 * 310.74351 * 21 20 19 23 23 S 1.75884 * 126.22211 * 196.07352 * 22 21 20 24 24 C 1.70911 * 90.26886 * 179.97438 * 23 22 21 25 25 C 1.50705 * 124.92572 * 180.02562 * 24 23 22 26 26 N 1.28660 * 110.14370 * 0.02562 * 24 23 22 27 27 C 1.32517 * 117.88074 * 0.02562 * 26 24 23 28 28 H 1.08988 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46888 * 299.99985 * 1 2 3 30 30 H 1.09003 * 109.47233 * 59.99138 * 1 2 3 31 31 H 1.08998 * 109.47009 * 60.00409 * 5 3 2 32 32 H 1.09000 * 109.47284 * 300.00416 * 5 3 2 33 33 H 0.96996 * 119.99902 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.47580 * 68.85135 * 19 17 15 35 35 H 1.09001 * 109.48237 * 308.84497 * 19 17 15 36 36 H 1.09000 * 109.55089 * 310.52671 * 20 19 17 37 37 H 1.08999 * 109.63174 * 190.28565 * 20 19 17 38 38 H 1.08997 * 109.61992 * 191.00968 * 21 20 19 39 39 H 1.09004 * 109.61281 * 70.47028 * 21 20 19 40 40 H 1.09002 * 109.46987 * 269.97633 * 25 24 23 41 41 H 1.08996 * 109.47409 * 29.97616 * 25 24 23 42 42 H 1.08998 * 109.47454 * 149.97696 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1304 3.3511 -1.1850 8 1 3.3428 3.3233 -1.9235 9 6 5.2942 4.0672 -1.4370 10 7 5.3026 5.0044 -2.3581 11 14 6.8468 3.6975 -0.4663 12 1 7.6583 2.6899 -1.1954 13 1 7.6366 4.9442 -0.3023 14 1 6.4799 3.1644 0.8702 15 6 4.2177 3.3123 1.1676 16 8 4.1546 2.7004 2.2129 17 6 4.5599 4.7800 1.1731 18 1 5.3798 4.9668 0.4795 19 6 4.9739 5.2051 2.5836 20 6 5.1071 6.7298 2.6382 21 6 3.7116 7.3563 2.5414 22 6 2.9835 6.7318 1.3753 23 16 1.5354 7.3583 0.5981 24 6 1.5385 6.0394 -0.4890 25 6 0.5230 5.8185 -1.5804 26 7 2.5335 5.2626 -0.2403 27 6 3.3425 5.5915 0.7564 28 1 -0.3633 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 6.1149 5.5045 -2.5337 34 1 5.9308 4.7475 2.8349 35 1 4.2173 4.8805 3.2979 36 1 5.7195 7.0725 1.8041 37 1 5.5743 7.0231 3.5782 38 1 3.8030 8.4308 2.3829 39 1 3.1601 7.1652 3.4620 40 1 -0.3053 5.2261 -1.1915 41 1 0.1490 6.7811 -1.9290 42 1 0.9907 5.2885 -2.4101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346185928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:40 Heat of formation + Delta-G solvation = -53.324672 kcal Electronic energy + Delta-G solvation = -29395.668082 eV Core-core repulsion = 25468.791652 eV Total energy + Delta-G solvation = -3926.876429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26283 -39.63374 -38.21825 -36.10342 -35.64343 -34.63162 -32.18277 -30.94289 -30.69214 -28.72711 -27.34478 -26.52544 -24.45690 -23.46962 -22.77407 -21.00249 -20.38438 -19.38754 -17.89350 -17.73535 -17.24775 -16.96243 -16.16958 -15.86886 -15.39831 -14.98576 -14.84898 -14.11067 -13.96835 -13.81792 -13.68895 -13.49091 -13.25793 -13.03591 -12.77540 -12.60891 -12.31485 -12.18012 -11.92602 -11.77211 -11.65943 -11.49698 -11.27250 -11.20529 -10.81239 -10.77749 -10.69846 -10.32662 -10.31227 -10.10990 -9.88342 -9.85896 -9.10648 -8.80965 -8.45163 -8.33904 -7.76257 -7.69993 -6.36747 -4.01050 1.44698 2.02335 2.40827 2.93301 2.99219 3.12109 3.16884 3.27036 3.68138 3.83122 4.10181 4.38706 4.73401 4.96091 5.12032 5.22584 5.26884 5.35304 5.42493 5.48063 5.53661 5.61586 5.77009 5.78872 5.80048 5.88070 5.93711 5.97941 6.02996 6.06512 6.06920 6.17935 6.31373 6.42699 6.48324 6.57523 6.73947 6.89418 6.95515 7.61487 7.75671 8.45370 8.62751 8.76718 8.96547 9.27785 9.65043 10.72318 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.007100 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.219184 B = 3942.534833 C = 5009.495629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.372 6.372 3 C 0.439 3.561 4 O -0.477 6.477 5 C 0.119 3.881 6 N -0.446 5.446 7 C -0.297 4.297 8 H 0.101 0.899 9 C 0.070 3.930 10 N -0.850 5.850 11 Si 0.834 3.166 12 H -0.276 1.276 13 H -0.276 1.276 14 H -0.255 1.255 15 C 0.514 3.486 16 O -0.591 6.591 17 C -0.017 4.017 18 H 0.103 0.897 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.032 4.032 22 C -0.239 4.239 23 S 0.035 5.965 24 C 0.057 3.943 25 C -0.065 4.065 26 N -0.376 5.376 27 C 0.117 3.883 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 1.011 4.350 6.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.289 6.289 3 C 0.279 3.721 4 O -0.360 6.360 5 C -0.007 4.007 6 N -0.166 5.166 7 C -0.425 4.425 8 H 0.118 0.882 9 C -0.136 4.136 10 N -0.485 5.485 11 Si 0.660 3.340 12 H -0.202 1.202 13 H -0.202 1.202 14 H -0.180 1.180 15 C 0.304 3.696 16 O -0.475 6.475 17 C -0.040 4.040 18 H 0.120 0.880 19 C -0.145 4.145 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.359 4.359 23 S 0.291 5.709 24 C -0.224 4.224 25 C -0.126 4.126 26 N -0.086 5.086 27 C -0.015 4.015 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.139 1.578 4.501 7.774 hybrid contribution 1.381 -0.444 0.298 1.481 sum -4.758 1.134 4.799 6.852 Atomic orbital electron populations 1.23074 0.77795 1.02613 1.02056 1.86513 1.22402 1.34816 1.85180 1.24874 0.93236 0.81154 0.72877 1.90686 1.66471 1.35861 1.43030 1.20957 0.86367 0.88141 1.05185 1.43232 1.60255 1.06804 1.06304 1.18746 1.01764 1.27918 0.94090 0.88172 1.25426 0.97210 0.95285 0.95635 1.69735 1.28204 1.18548 1.32022 0.87560 0.85152 0.79194 0.82139 1.20210 1.20202 1.17959 1.20073 0.78229 0.88085 0.83246 1.90522 1.57037 1.67702 1.32224 1.20116 0.94642 0.91929 0.97332 0.87954 1.21484 1.02507 0.94829 0.95715 1.21640 0.96078 0.95584 1.02199 1.20058 0.94732 0.98685 0.93753 1.25760 1.01769 1.01891 1.06503 1.83347 1.25870 1.31362 1.30317 1.26931 0.99475 0.93890 1.02072 1.20275 0.95233 1.01892 0.95202 1.66089 1.01020 1.27780 1.13734 1.20206 0.96532 0.92823 0.91966 0.88921 0.92587 0.92357 0.86778 0.87571 0.91880 0.91128 0.90372 0.91481 0.90869 0.90884 0.90672 0.90648 0.91374 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.42 10.57 -39.26 -0.41 -6.83 16 3 C 0.44 9.04 8.02 36.00 0.29 9.32 16 4 O -0.48 -11.20 16.16 -18.75 -0.30 -11.50 16 5 C 0.12 2.45 6.03 -5.20 -0.03 2.42 16 6 N -0.45 -10.78 1.45 -116.10 -0.17 -10.95 16 7 C -0.30 -7.64 6.74 -14.93 -0.10 -7.74 16 8 H 0.10 2.85 8.06 -52.49 -0.42 2.43 16 9 C 0.07 1.82 4.13 -17.47 -0.07 1.75 16 10 N -0.85 -22.90 13.96 55.50 0.77 -22.12 16 11 Si 0.83 19.65 24.73 -169.99 -4.20 15.45 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.26 -6.09 5.37 56.52 0.30 -5.79 16 15 C 0.51 12.78 4.43 -10.98 -0.05 12.73 16 16 O -0.59 -15.34 15.33 5.55 0.09 -15.26 16 17 C -0.02 -0.39 1.34 -92.20 -0.12 -0.51 16 18 H 0.10 2.49 2.82 -51.93 -0.15 2.34 16 19 C -0.11 -2.07 4.67 -26.64 -0.12 -2.19 16 20 C -0.12 -1.81 5.95 -26.51 -0.16 -1.97 16 21 C -0.03 -0.50 6.28 -27.59 -0.17 -0.68 16 22 C -0.24 -4.65 6.39 -35.45 -0.23 -4.88 16 23 S 0.04 0.61 23.17 -107.50 -2.49 -1.88 16 24 C 0.06 1.16 7.38 -13.60 -0.10 1.06 16 25 C -0.07 -1.08 10.46 36.01 0.38 -0.71 16 26 N -0.38 -8.89 7.72 -7.33 -0.06 -8.95 16 27 C 0.12 2.67 6.03 -82.87 -0.50 2.17 16 28 H 0.09 0.91 8.14 -51.94 -0.42 0.49 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.11 2.06 8.06 -51.93 -0.42 1.64 16 32 H 0.11 2.09 7.30 -51.93 -0.38 1.71 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.55 7.66 -51.93 -0.40 1.15 16 36 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -32.38 352.78 -7.03 -39.41 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.65 Total: 4.94 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 0.07 Total: 12.37 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.55 Total: -42.02 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.63 Total: -33.59 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.20 Total: 15.45 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.49 Total: -1.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.38 -7.03 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346185928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.915 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds