Wall clock time and date at job start Tue Mar 31 2020 20:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99947 * 2 1 4 4 O 1.20827 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00028 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47214 * 180.02562 * 5 3 2 7 7 C 1.37101 * 120.00190 * 272.32276 * 6 5 3 8 8 H 1.07997 * 119.99498 * 50.04727 * 7 6 5 9 9 C 1.38951 * 120.00336 * 230.04746 * 7 6 5 10 10 N 1.31410 * 120.00054 * 199.64681 * 9 7 6 11 11 Si 1.86805 * 119.99763 * 19.65221 * 9 7 6 12 12 H 1.48503 * 109.47251 * 92.13015 * 11 9 7 13 13 H 1.48491 * 109.47062 * 212.12859 * 11 9 7 14 14 H 1.48500 * 109.47145 * 332.13102 * 11 9 7 15 15 C 1.34778 * 120.00176 * 92.32235 * 6 5 3 16 16 O 1.21289 * 119.99885 * 3.86895 * 15 6 5 17 17 C 1.50703 * 120.00101 * 183.86951 * 15 6 5 18 18 H 1.09002 * 109.59466 * 308.35171 * 17 15 6 19 19 C 1.53023 * 109.59530 * 188.04834 * 17 15 6 20 20 C 1.53145 * 109.44936 * 188.84337 * 19 17 15 21 21 C 1.53284 * 108.99660 * 70.38251 * 20 19 17 22 22 C 1.50998 * 108.58212 * 310.74351 * 21 20 19 23 23 S 1.75884 * 126.22211 * 196.07352 * 22 21 20 24 24 C 1.70911 * 90.26886 * 179.97438 * 23 22 21 25 25 C 1.50705 * 124.92572 * 180.02562 * 24 23 22 26 26 N 1.28660 * 110.14370 * 0.02562 * 24 23 22 27 27 C 1.32517 * 117.88074 * 0.02562 * 26 24 23 28 28 H 1.08988 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46888 * 299.99985 * 1 2 3 30 30 H 1.09003 * 109.47233 * 59.99138 * 1 2 3 31 31 H 1.08998 * 109.47009 * 60.00409 * 5 3 2 32 32 H 1.09000 * 109.47284 * 300.00416 * 5 3 2 33 33 H 0.96996 * 119.99902 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.47580 * 68.85135 * 19 17 15 35 35 H 1.09001 * 109.48237 * 308.84497 * 19 17 15 36 36 H 1.09000 * 109.55089 * 310.52671 * 20 19 17 37 37 H 1.08999 * 109.63174 * 190.28565 * 20 19 17 38 38 H 1.08997 * 109.61992 * 191.00968 * 21 20 19 39 39 H 1.09004 * 109.61281 * 70.47028 * 21 20 19 40 40 H 1.09002 * 109.46987 * 269.97633 * 25 24 23 41 41 H 1.08996 * 109.47409 * 29.97616 * 25 24 23 42 42 H 1.08998 * 109.47454 * 149.97696 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1304 3.3511 -1.1850 8 1 3.3428 3.3233 -1.9235 9 6 5.2942 4.0672 -1.4370 10 7 5.3026 5.0044 -2.3581 11 14 6.8468 3.6975 -0.4663 12 1 7.6583 2.6899 -1.1954 13 1 7.6366 4.9442 -0.3023 14 1 6.4799 3.1644 0.8702 15 6 4.2177 3.3123 1.1676 16 8 4.1546 2.7004 2.2129 17 6 4.5599 4.7800 1.1731 18 1 5.3798 4.9668 0.4795 19 6 4.9739 5.2051 2.5836 20 6 5.1071 6.7298 2.6382 21 6 3.7116 7.3563 2.5414 22 6 2.9835 6.7318 1.3753 23 16 1.5354 7.3583 0.5981 24 6 1.5385 6.0394 -0.4890 25 6 0.5230 5.8185 -1.5804 26 7 2.5335 5.2626 -0.2403 27 6 3.3425 5.5915 0.7564 28 1 -0.3633 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 6.1149 5.5045 -2.5337 34 1 5.9308 4.7475 2.8349 35 1 4.2173 4.8805 3.2979 36 1 5.7195 7.0725 1.8041 37 1 5.5743 7.0231 3.5782 38 1 3.8030 8.4308 2.3829 39 1 3.1601 7.1652 3.4620 40 1 -0.3053 5.2261 -1.1915 41 1 0.1490 6.7811 -1.9290 42 1 0.9907 5.2885 -2.4101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346185928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:39 Heat of formation + Delta-G solvation = -73.482695 kcal Electronic energy + Delta-G solvation = -29396.542199 eV Core-core repulsion = 25468.791652 eV Total energy + Delta-G solvation = -3927.750547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94077 -41.18911 -39.92239 -37.62987 -37.15690 -36.51773 -34.08471 -32.39873 -32.22405 -30.27148 -28.76669 -27.92912 -26.35703 -24.98326 -24.24895 -22.51022 -21.90962 -21.19073 -19.57063 -19.30480 -18.86856 -18.58106 -17.80228 -17.41271 -17.11359 -16.69100 -16.48921 -15.78917 -15.54109 -15.27417 -15.16744 -15.00879 -14.73513 -14.63795 -14.44104 -14.11617 -13.89174 -13.74937 -13.41907 -13.18756 -13.06107 -12.94636 -12.85697 -12.75574 -12.70073 -12.35196 -12.12977 -11.95106 -11.74119 -11.70115 -11.58188 -11.45883 -10.98445 -10.70436 -9.93046 -9.86128 -9.63144 -9.26629 -8.36515 -6.02272 -0.05234 0.59099 0.88784 1.15598 1.27959 1.30089 1.32856 1.51653 2.02757 2.13353 2.17570 2.66781 3.00674 3.27975 3.75970 3.83510 3.87216 4.04859 4.12270 4.14542 4.18986 4.30833 4.32739 4.39306 4.44705 4.45479 4.47292 4.65966 4.66741 4.68827 4.69485 4.87874 4.97608 5.01930 5.12530 5.15673 5.32071 5.37760 5.43543 5.72824 5.79814 6.53467 6.86379 6.99258 7.26832 7.33132 7.72638 8.75688 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.007100 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.219184 B = 3942.534833 C = 5009.495629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.443 3.557 4 O -0.512 6.512 5 C 0.109 3.891 6 N -0.452 5.452 7 C -0.280 4.280 8 H 0.061 0.939 9 C 0.045 3.955 10 N -0.882 5.882 11 Si 0.885 3.115 12 H -0.273 1.273 13 H -0.269 1.269 14 H -0.262 1.262 15 C 0.505 3.495 16 O -0.611 6.611 17 C -0.023 4.023 18 H 0.085 0.915 19 C -0.106 4.106 20 C -0.109 4.109 21 C -0.034 4.034 22 C -0.241 4.241 23 S 0.113 5.887 24 C 0.021 3.979 25 C -0.060 4.060 26 N -0.422 5.422 27 C 0.071 3.929 28 H 0.138 0.862 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.272 0.728 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 1.981 5.905 8.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.282 6.282 3 C 0.284 3.716 4 O -0.399 6.399 5 C -0.015 4.015 6 N -0.172 5.172 7 C -0.409 4.409 8 H 0.079 0.921 9 C -0.158 4.158 10 N -0.519 5.519 11 Si 0.710 3.290 12 H -0.199 1.199 13 H -0.194 1.194 14 H -0.187 1.187 15 C 0.296 3.704 16 O -0.497 6.497 17 C -0.046 4.046 18 H 0.102 0.898 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.074 4.074 22 C -0.361 4.361 23 S 0.369 5.631 24 C -0.259 4.259 25 C -0.120 4.120 26 N -0.133 5.133 27 C -0.061 4.061 28 H 0.156 0.844 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.442 2.517 6.040 9.183 hybrid contribution 1.277 -0.776 -0.169 1.504 sum -5.165 1.741 5.871 8.012 Atomic orbital electron populations 1.23446 0.75334 1.05475 1.01801 1.86484 1.24673 1.32689 1.84397 1.24743 0.93212 0.81543 0.72074 1.90677 1.67164 1.37182 1.44846 1.21180 0.86986 0.86611 1.06770 1.43286 1.60191 1.08038 1.05671 1.18230 1.00647 1.28361 0.93637 0.92078 1.25722 0.99036 0.94781 0.96293 1.69824 1.28760 1.19512 1.33788 0.86773 0.82455 0.79179 0.80635 1.19893 1.19362 1.18730 1.20575 0.77739 0.89075 0.83025 1.90480 1.58135 1.68403 1.32657 1.20158 0.94611 0.90827 0.99006 0.89777 1.21522 1.01984 0.97714 0.93199 1.21656 0.96535 0.92570 1.04022 1.20303 0.94234 0.99963 0.92854 1.26438 1.02206 1.00862 1.06635 1.82899 1.23849 1.28453 1.27856 1.27420 0.99674 0.95188 1.03595 1.20324 0.94508 1.03538 0.93660 1.66020 1.02391 1.29909 1.15001 1.20294 0.97495 0.94693 0.93576 0.84448 0.93044 0.92500 0.84501 0.86554 0.91801 0.91072 0.91265 0.92246 0.86807 0.87933 0.88636 0.89872 0.88062 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.04 16 2 O -0.37 -12.39 10.57 -51.43 -0.54 -12.93 16 3 C 0.44 18.52 8.02 71.24 0.57 19.09 16 4 O -0.51 -24.81 16.16 21.96 0.35 -24.46 16 5 C 0.11 4.58 6.03 85.63 0.52 5.09 16 6 N -0.45 -22.43 1.45 -639.61 -0.93 -23.36 16 7 C -0.28 -14.96 6.74 84.04 0.57 -14.39 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 C 0.05 2.39 4.13 84.93 0.35 2.74 16 10 N -0.88 -48.91 13.96 21.66 0.30 -48.61 16 11 Si 0.88 41.31 24.73 68.60 1.70 43.01 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.26 -12.48 5.37 99.48 0.53 -11.94 16 15 C 0.51 25.57 4.43 87.66 0.39 25.96 16 16 O -0.61 -32.17 15.33 -3.06 -0.05 -32.22 16 17 C -0.02 -1.06 1.34 -11.82 -0.02 -1.08 16 18 H 0.08 4.14 2.82 -2.39 -0.01 4.14 16 19 C -0.11 -3.99 4.67 30.65 0.14 -3.85 16 20 C -0.11 -3.10 5.95 30.74 0.18 -2.92 16 21 C -0.03 -0.94 6.28 30.04 0.19 -0.75 16 22 C -0.24 -8.98 6.39 24.95 0.16 -8.82 16 23 S 0.11 3.72 23.17 -56.49 -1.31 2.41 16 24 C 0.02 0.87 7.38 88.57 0.65 1.52 16 25 C -0.06 -2.00 10.46 71.24 0.75 -1.26 16 26 N -0.42 -20.44 7.72 -177.09 -1.37 -21.81 16 27 C 0.07 3.28 6.03 42.08 0.25 3.53 16 28 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.14 4.97 8.06 -2.39 -0.02 4.96 16 32 H 0.12 4.61 7.30 -2.39 -0.02 4.59 16 33 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.69 7.66 -2.39 -0.02 2.67 16 36 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 37 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.59 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.48 352.78 4.94 -68.54 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.88 Total: 22.51 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 5.90 Total: 26.91 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -1.99 Total: -93.77 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -0.24 Total: -69.60 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.70 Total: 43.01 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.31 Total: 2.41 kcal Total: -73.48 4.94 -68.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346185928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.943 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds