Wall clock time and date at job start Tue Mar 31 2020 21:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00385 * 2 1 4 4 N 1.46503 * 109.47215 * 125.18149 * 3 2 1 5 5 C 1.46501 * 120.00043 * 94.78043 * 4 3 2 6 6 C 1.50706 * 109.46878 * 79.48426 * 5 4 3 7 7 H 1.08001 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99930 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99866 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.46960 * 90.00023 * 10 8 6 12 12 H 1.48498 * 109.46993 * 210.00402 * 10 8 6 13 13 H 1.48503 * 109.46881 * 330.00387 * 10 8 6 14 14 C 1.34781 * 119.99910 * 274.78108 * 4 3 2 15 15 O 1.21549 * 119.99971 * 1.63327 * 14 4 3 16 16 C 1.47843 * 119.99859 * 181.63278 * 14 4 3 17 17 C 1.39594 * 120.14303 * 22.91830 * 16 14 4 18 18 C 1.37940 * 119.85152 * 179.78853 * 17 16 14 19 19 C 1.38382 * 120.14485 * 0.49001 * 18 17 16 20 20 C 1.38335 * 120.29129 * 359.74901 * 19 18 17 21 21 C 1.50699 * 119.92593 * 180.02562 * 20 19 18 22 22 S 1.81395 * 109.47143 * 270.01502 * 21 20 19 23 23 N 1.65601 * 104.45210 * 180.02562 * 22 21 20 24 24 O 1.42110 * 110.54143 * 291.62513 * 22 21 20 25 25 O 1.42101 * 110.54283 * 68.37229 * 22 21 20 26 26 C 1.37976 * 120.14777 * 0.02562 * 20 19 18 27 27 H 1.07999 * 120.00494 * 185.02134 * 1 2 3 28 28 H 1.08010 * 119.99573 * 5.02398 * 1 2 3 29 29 H 1.08001 * 119.99705 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47092 * 245.18028 * 3 2 1 31 31 H 1.09005 * 109.47010 * 5.18252 * 3 2 1 32 32 H 1.08996 * 109.47260 * 199.48635 * 5 4 3 33 33 H 1.08995 * 109.46834 * 319.48856 * 5 4 3 34 34 H 0.97001 * 119.99904 * 180.02562 * 9 8 6 35 35 H 1.07995 * 120.07902 * 0.02562 * 17 16 14 36 36 H 1.08007 * 119.92770 * 180.20765 * 18 17 16 37 37 H 1.07998 * 119.85455 * 179.76017 * 19 18 17 38 38 H 1.08998 * 109.47388 * 30.01246 * 21 20 19 39 39 H 1.09006 * 109.47179 * 150.01736 * 21 20 19 40 40 H 0.96999 * 120.00011 * 150.00175 * 23 22 21 41 41 H 0.97002 * 119.99726 * 329.99658 * 23 22 21 42 42 H 1.07998 * 120.07734 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9969 1.3300 1.1289 5 6 4.3908 0.9222 0.9361 6 6 5.1627 2.0536 0.3074 7 1 4.6649 2.9834 0.0750 8 6 6.5047 1.9019 0.0297 9 7 7.1109 0.7697 0.3130 10 14 7.4617 3.3044 -0.7491 11 1 8.0339 4.1651 0.3171 12 1 8.5600 2.7518 -1.5819 13 1 6.5519 4.1112 -1.6015 14 6 2.5733 1.7281 2.3449 15 8 1.4099 2.0381 2.5117 16 6 3.5237 1.7878 3.4758 17 6 4.8934 1.9081 3.2348 18 6 5.7744 1.9677 4.2945 19 6 5.3040 1.8982 5.5941 20 6 3.9483 1.7739 5.8397 21 6 3.4450 1.6996 7.2582 22 16 3.3930 -0.0335 7.7913 23 7 2.8286 0.0294 9.3469 24 8 2.3865 -0.7433 7.0823 25 8 4.7084 -0.5565 7.9160 26 6 3.0559 1.7179 4.7888 27 1 -0.5401 -0.9317 0.0819 28 1 -0.5400 0.9318 -0.0819 29 1 1.8499 -0.9353 0.0004 30 1 2.6188 1.4040 -0.9327 31 1 1.3589 2.1315 0.0928 32 1 4.8330 0.6724 1.9005 33 1 4.4272 0.0504 0.2830 34 1 8.0551 0.6631 0.1180 35 1 5.2622 1.9583 2.2210 36 1 6.8341 2.0641 4.1095 37 1 5.9983 1.9414 6.4202 38 1 4.1138 2.2606 7.9109 39 1 2.4432 2.1262 7.3111 40 1 2.3116 -0.7088 9.7055 41 1 3.0152 0.8045 9.8995 42 1 1.9977 1.6213 4.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359432474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:49 Heat of formation + Delta-G solvation = -34.649687 kcal Electronic energy + Delta-G solvation = -27322.671169 eV Core-core repulsion = 23396.604548 eV Total energy + Delta-G solvation = -3926.066621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98077 -38.09888 -37.04870 -35.94398 -35.62598 -34.08520 -33.39300 -32.70948 -32.16486 -30.66832 -28.14973 -27.01635 -25.86777 -23.43475 -22.48319 -21.59669 -19.82859 -19.52708 -18.78765 -17.75372 -17.51692 -16.73413 -16.46767 -16.18808 -16.00846 -15.65147 -15.35659 -14.83445 -14.63287 -14.29586 -13.96376 -13.92382 -13.22145 -13.06167 -12.89411 -12.70421 -12.52377 -12.35238 -12.22375 -12.10918 -11.98905 -11.86565 -11.36555 -11.23870 -11.14117 -11.02350 -10.94193 -10.83728 -10.63805 -10.34827 -9.93440 -9.73653 -9.28124 -8.90446 -8.79208 -8.60518 -8.21138 -7.82259 -6.38044 -4.49037 0.05639 1.34462 1.71561 2.60307 2.77119 3.12839 3.21453 3.24253 3.41818 3.59341 3.92594 4.13008 4.17200 4.31449 4.37165 4.81386 4.91554 5.16549 5.23291 5.35730 5.38709 5.47173 5.60885 5.73321 5.83429 5.92367 5.96661 6.19743 6.26892 6.33294 6.35953 6.58682 6.60361 6.80563 6.92127 6.97444 6.99971 7.08760 7.16414 7.35796 7.45270 7.57151 7.81647 8.24888 8.61648 8.92203 9.19647 10.65671 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.003994 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.356234 B = 7008.777674 C = 8797.427951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.147 3.853 4 N -0.584 5.584 5 C 0.205 3.795 6 C -0.549 4.549 7 H 0.068 0.932 8 C 0.070 3.930 9 N -0.876 5.876 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.557 3.443 15 O -0.565 6.565 16 C -0.135 4.135 17 C -0.087 4.087 18 C -0.133 4.133 19 C -0.085 4.085 20 C -0.134 4.134 21 C -0.562 4.562 22 S 2.605 3.395 23 N -1.255 6.255 24 O -0.955 6.955 25 O -0.956 6.956 26 C -0.050 4.050 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.271 0.729 35 H 0.218 0.782 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.418 0.582 41 H 0.411 0.589 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 1.569 13.193 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.313 5.313 5 C 0.086 3.914 6 C -0.587 4.587 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.512 5.512 10 Si 0.725 3.275 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.346 3.654 15 O -0.446 6.446 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.137 4.137 21 C -0.690 4.690 22 S 2.697 3.303 23 N -0.926 5.926 24 O -0.944 6.944 25 O -0.945 6.945 26 C -0.070 4.070 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.248 0.752 41 H 0.236 0.764 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.355 0.781 12.592 13.706 hybrid contribution 0.448 1.326 0.228 1.418 sum -4.906 2.107 12.821 13.888 Atomic orbital electron populations 1.23706 0.95836 1.01360 1.01419 1.23379 0.96172 0.99335 0.99087 1.20377 0.92171 0.94750 0.90247 1.48027 1.12619 1.63248 1.07378 1.20391 0.75457 0.96123 0.99463 1.21444 0.94501 1.00664 1.42085 0.91359 1.25030 0.97595 0.96143 0.94831 1.69935 1.11681 1.24132 1.45471 0.86470 0.79583 0.81842 0.79611 1.20118 1.20835 1.19532 1.18231 0.86928 0.77301 0.82950 1.90665 1.18369 1.51422 1.84184 1.19974 0.94507 1.06157 0.93161 1.24170 0.91850 0.88510 1.05851 1.21269 1.00710 1.01402 0.91709 1.21287 0.93982 0.97176 0.97980 1.18535 0.94181 1.10217 0.90735 1.29289 1.11070 1.24937 1.03728 1.05240 0.74733 0.77178 0.73124 1.53356 1.74201 1.31208 1.33873 1.93620 1.59187 1.69627 1.71989 1.93614 1.40205 1.75776 1.84892 1.21100 0.99659 0.95140 0.91078 0.88977 0.88728 0.87552 0.89119 0.90702 0.91527 0.94582 0.91942 0.76656 0.85074 0.85681 0.84308 0.83983 0.75221 0.76360 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 14.31 29.02 0.42 -2.43 16 2 C -0.16 -2.76 9.81 -36.02 -0.35 -3.11 16 3 C 0.15 2.78 5.77 -5.19 -0.03 2.75 16 4 N -0.58 -12.51 2.47 -177.55 -0.44 -12.95 16 5 C 0.20 4.70 4.61 -5.19 -0.02 4.68 16 6 C -0.55 -13.18 7.31 -34.44 -0.25 -13.44 16 7 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 9 N -0.88 -22.17 13.29 55.43 0.74 -21.44 16 10 Si 0.90 19.06 29.54 -169.99 -5.02 14.04 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 C 0.56 12.30 7.49 -12.33 -0.09 12.21 16 15 O -0.56 -13.20 16.25 5.32 0.09 -13.11 16 16 C -0.14 -2.77 5.62 -104.97 -0.59 -3.36 16 17 C -0.09 -1.76 7.53 -39.18 -0.30 -2.06 16 18 C -0.13 -2.33 10.03 -39.64 -0.40 -2.73 16 19 C -0.08 -1.29 9.69 -39.49 -0.38 -1.68 16 20 C -0.13 -2.02 5.13 -104.68 -0.54 -2.56 16 21 C -0.56 -5.51 6.30 36.00 0.23 -5.28 16 22 S 2.60 30.01 5.95 -107.50 -0.64 29.37 16 23 N -1.25 -8.27 9.36 60.35 0.57 -7.71 16 24 O -0.95 -15.08 18.10 -57.54 -1.04 -16.12 16 25 O -0.96 -14.47 18.10 -57.54 -1.04 -15.51 16 26 C -0.05 -0.89 9.24 -39.18 -0.36 -1.25 16 27 H 0.09 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.09 1.40 7.86 -52.48 -0.41 0.99 16 29 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 31 H 0.07 1.41 7.26 -51.93 -0.38 1.03 16 32 H 0.07 1.58 4.22 -51.94 -0.22 1.36 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.22 4.84 2.52 -52.49 -0.13 4.71 16 36 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.14 0.86 8.08 -51.92 -0.42 0.44 16 39 H 0.14 1.07 8.08 -51.92 -0.42 0.65 16 40 H 0.42 2.38 8.96 -34.47 -0.31 2.08 16 41 H 0.41 1.34 8.96 -34.47 -0.31 1.03 16 42 H 0.13 2.28 7.82 -52.49 -0.41 1.87 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -33.54 370.81 -9.06 -42.60 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.08 Total: 11.89 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.77 Total: -16.66 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.86 Total: -42.09 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.00 Total: -44.74 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 30.01 SS G_CDS: -0.64 Total: 29.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.54 -9.06 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.954 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds