Wall clock time and date at job start Tue Mar 31 2020 21:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00385 * 2 1 4 4 N 1.46503 * 109.47215 * 125.18149 * 3 2 1 5 5 C 1.46501 * 120.00043 * 94.78043 * 4 3 2 6 6 C 1.50706 * 109.46878 * 79.48426 * 5 4 3 7 7 H 1.08001 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99930 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99866 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.46960 * 90.00023 * 10 8 6 12 12 H 1.48498 * 109.46993 * 210.00402 * 10 8 6 13 13 H 1.48503 * 109.46881 * 330.00387 * 10 8 6 14 14 C 1.34781 * 119.99910 * 274.78108 * 4 3 2 15 15 O 1.21549 * 119.99971 * 1.63327 * 14 4 3 16 16 C 1.47843 * 119.99859 * 181.63278 * 14 4 3 17 17 C 1.39594 * 120.14303 * 22.91830 * 16 14 4 18 18 C 1.37940 * 119.85152 * 179.78853 * 17 16 14 19 19 C 1.38382 * 120.14485 * 0.49001 * 18 17 16 20 20 C 1.38335 * 120.29129 * 359.74901 * 19 18 17 21 21 C 1.50699 * 119.92593 * 180.02562 * 20 19 18 22 22 S 1.81395 * 109.47143 * 270.01502 * 21 20 19 23 23 N 1.65601 * 104.45210 * 180.02562 * 22 21 20 24 24 O 1.42110 * 110.54143 * 291.62513 * 22 21 20 25 25 O 1.42101 * 110.54283 * 68.37229 * 22 21 20 26 26 C 1.37976 * 120.14777 * 0.02562 * 20 19 18 27 27 H 1.07999 * 120.00494 * 185.02134 * 1 2 3 28 28 H 1.08010 * 119.99573 * 5.02398 * 1 2 3 29 29 H 1.08001 * 119.99705 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47092 * 245.18028 * 3 2 1 31 31 H 1.09005 * 109.47010 * 5.18252 * 3 2 1 32 32 H 1.08996 * 109.47260 * 199.48635 * 5 4 3 33 33 H 1.08995 * 109.46834 * 319.48856 * 5 4 3 34 34 H 0.97001 * 119.99904 * 180.02562 * 9 8 6 35 35 H 1.07995 * 120.07902 * 0.02562 * 17 16 14 36 36 H 1.08007 * 119.92770 * 180.20765 * 18 17 16 37 37 H 1.07998 * 119.85455 * 179.76017 * 19 18 17 38 38 H 1.08998 * 109.47388 * 30.01246 * 21 20 19 39 39 H 1.09006 * 109.47179 * 150.01736 * 21 20 19 40 40 H 0.96999 * 120.00011 * 150.00175 * 23 22 21 41 41 H 0.97002 * 119.99726 * 329.99658 * 23 22 21 42 42 H 1.07998 * 120.07734 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9969 1.3300 1.1289 5 6 4.3908 0.9222 0.9361 6 6 5.1627 2.0536 0.3074 7 1 4.6649 2.9834 0.0750 8 6 6.5047 1.9019 0.0297 9 7 7.1109 0.7697 0.3130 10 14 7.4617 3.3044 -0.7491 11 1 8.0339 4.1651 0.3171 12 1 8.5600 2.7518 -1.5819 13 1 6.5519 4.1112 -1.6015 14 6 2.5733 1.7281 2.3449 15 8 1.4099 2.0381 2.5117 16 6 3.5237 1.7878 3.4758 17 6 4.8934 1.9081 3.2348 18 6 5.7744 1.9677 4.2945 19 6 5.3040 1.8982 5.5941 20 6 3.9483 1.7739 5.8397 21 6 3.4450 1.6996 7.2582 22 16 3.3930 -0.0335 7.7913 23 7 2.8286 0.0294 9.3469 24 8 2.3865 -0.7433 7.0823 25 8 4.7084 -0.5565 7.9160 26 6 3.0559 1.7179 4.7888 27 1 -0.5401 -0.9317 0.0819 28 1 -0.5400 0.9318 -0.0819 29 1 1.8499 -0.9353 0.0004 30 1 2.6188 1.4040 -0.9327 31 1 1.3589 2.1315 0.0928 32 1 4.8330 0.6724 1.9005 33 1 4.4272 0.0504 0.2830 34 1 8.0551 0.6631 0.1180 35 1 5.2622 1.9583 2.2210 36 1 6.8341 2.0641 4.1095 37 1 5.9983 1.9414 6.4202 38 1 4.1138 2.2606 7.9109 39 1 2.4432 2.1262 7.3111 40 1 2.3116 -0.7088 9.7055 41 1 3.0152 0.8045 9.8995 42 1 1.9977 1.6213 4.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359432474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:49 Heat of formation + Delta-G solvation = -59.528644 kcal Electronic energy + Delta-G solvation = -27323.750002 eV Core-core repulsion = 23396.604548 eV Total energy + Delta-G solvation = -3927.145454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53148 -39.54579 -38.08648 -37.33637 -36.97445 -35.57636 -34.29076 -34.02438 -33.58260 -32.05221 -29.76848 -28.38154 -27.31572 -25.20344 -23.97947 -22.93535 -21.17309 -20.55550 -20.21688 -18.65177 -18.55621 -18.41059 -17.83660 -17.65918 -17.23561 -16.91757 -16.51820 -16.27396 -16.10627 -15.73453 -15.37524 -15.32975 -14.64796 -14.54062 -14.37368 -14.26282 -13.78094 -13.60225 -13.30046 -13.18089 -13.14374 -13.06110 -13.05000 -12.72452 -12.67781 -12.41338 -12.28629 -12.20527 -12.06938 -11.73506 -11.40842 -11.23694 -10.87699 -10.66073 -10.27608 -10.01264 -9.61254 -9.53066 -8.25250 -6.42198 -0.86757 -0.07006 0.39412 1.24974 1.43245 1.46572 1.55251 1.85273 1.99050 2.32020 2.43572 2.69872 2.85979 3.03234 3.33470 3.37710 3.63260 3.89288 4.01890 4.08784 4.19768 4.25170 4.44110 4.49166 4.53325 4.58096 4.76475 4.80927 4.91451 4.99316 5.01420 5.19505 5.28468 5.29989 5.50074 5.59267 5.62029 5.64803 5.70036 5.84670 5.92367 5.98614 6.42278 6.49152 6.73636 7.18877 7.31596 8.78691 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.003994 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.356234 B = 7008.777674 C = 8797.427951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.145 3.855 4 N -0.587 5.587 5 C 0.219 3.781 6 C -0.552 4.552 7 H 0.058 0.942 8 C 0.035 3.965 9 N -0.904 5.904 10 Si 0.955 3.045 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.548 3.452 15 O -0.586 6.586 16 C -0.162 4.162 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.077 4.077 20 C -0.127 4.127 21 C -0.552 4.552 22 S 2.616 3.384 23 N -1.233 6.233 24 O -1.005 7.005 25 O -0.996 6.996 26 C -0.062 4.062 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.015 0.985 34 H 0.273 0.727 35 H 0.193 0.807 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.189 0.811 39 H 0.173 0.827 40 H 0.426 0.574 41 H 0.430 0.570 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 2.737 15.751 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.205 4.205 3 C 0.023 3.977 4 N -0.315 5.315 5 C 0.099 3.901 6 C -0.589 4.589 7 H 0.077 0.923 8 C -0.168 4.168 9 N -0.541 5.541 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.339 3.661 15 O -0.470 6.470 16 C -0.165 4.165 17 C -0.130 4.130 18 C -0.159 4.159 19 C -0.096 4.096 20 C -0.129 4.129 21 C -0.682 4.682 22 S 2.710 3.290 23 N -0.911 5.911 24 O -0.995 6.995 25 O -0.985 6.985 26 C -0.082 4.082 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.209 0.791 36 H 0.159 0.841 37 H 0.185 0.815 38 H 0.207 0.793 39 H 0.191 0.809 40 H 0.257 0.743 41 H 0.260 0.740 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.407 1.936 15.158 16.210 hybrid contribution 0.387 0.984 -0.449 1.149 sum -5.021 2.920 14.709 15.814 Atomic orbital electron populations 1.23957 0.95093 1.02803 0.98096 1.23246 0.96909 0.98237 1.02159 1.20466 0.91918 0.95901 0.89427 1.48088 1.12396 1.62955 1.08082 1.20133 0.76310 0.95086 0.98585 1.21467 0.94901 1.00394 1.42178 0.92336 1.25626 0.98146 0.97996 0.95077 1.70017 1.11990 1.25626 1.46453 0.85587 0.78230 0.79330 0.78849 1.19359 1.20565 1.19684 1.18629 0.87132 0.76876 0.83489 1.90618 1.19142 1.52627 1.84565 1.19999 0.94318 1.08377 0.93766 1.23870 0.92377 0.91038 1.05713 1.21458 1.00859 1.01234 0.92309 1.21760 0.94870 0.94886 0.98042 1.18966 0.93800 1.07381 0.92714 1.29290 1.14161 1.23781 1.00924 1.04479 0.73382 0.77425 0.73671 1.52790 1.73761 1.32398 1.32145 1.93566 1.60357 1.71761 1.73800 1.93577 1.41983 1.77279 1.85684 1.21295 1.00498 0.95522 0.90901 0.86540 0.88082 0.87838 0.89355 0.90838 0.92068 0.96711 0.91762 0.79051 0.84067 0.81496 0.79347 0.80937 0.74304 0.74012 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 14.31 67.79 0.97 -3.87 16 2 C -0.19 -6.56 9.81 25.65 0.25 -6.31 16 3 C 0.14 5.73 5.77 85.63 0.49 6.22 16 4 N -0.59 -26.44 2.47 -833.91 -2.06 -28.50 16 5 C 0.22 10.61 4.61 85.63 0.39 11.00 16 6 C -0.55 -27.55 7.31 25.60 0.19 -27.36 16 7 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 8 C 0.03 1.72 5.29 84.66 0.45 2.17 16 9 N -0.90 -46.87 13.29 21.45 0.28 -46.58 16 10 Si 0.96 39.46 29.54 68.60 2.03 41.48 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 C 0.55 25.21 7.49 86.79 0.65 25.86 16 15 O -0.59 -28.13 16.25 -3.87 -0.06 -28.20 16 16 C -0.16 -6.81 5.62 -20.09 -0.11 -6.92 16 17 C -0.11 -4.70 7.53 22.53 0.17 -4.53 16 18 C -0.14 -4.85 10.03 22.23 0.22 -4.62 16 19 C -0.08 -2.12 9.69 22.33 0.22 -1.90 16 20 C -0.13 -3.47 5.13 -19.90 -0.10 -3.57 16 21 C -0.55 -8.35 6.30 71.24 0.45 -7.90 16 22 S 2.62 53.71 5.95 -56.49 -0.34 53.37 16 23 N -1.23 -12.03 9.36 37.02 0.35 -11.68 16 24 O -1.01 -30.88 18.10 -127.65 -2.31 -33.19 16 25 O -1.00 -28.11 18.10 -127.65 -2.31 -30.42 16 26 C -0.06 -2.19 9.24 22.53 0.21 -1.98 16 27 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.10 2.89 7.86 -2.91 -0.02 2.87 16 29 H 0.10 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.09 3.42 8.04 -2.39 -0.02 3.40 16 31 H 0.07 2.87 7.26 -2.38 -0.02 2.85 16 32 H 0.06 3.09 4.22 -2.40 -0.01 3.07 16 33 H 0.01 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.19 9.01 2.52 -2.91 -0.01 9.00 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.19 1.05 8.08 -2.39 -0.02 1.04 16 39 H 0.17 1.71 8.08 -2.39 -0.02 1.69 16 40 H 0.43 3.64 8.96 -96.75 -0.87 2.77 16 41 H 0.43 0.86 8.96 -96.74 -0.87 0.00 16 42 H 0.14 4.59 7.82 -2.91 -0.02 4.57 16 Total: -1.00 -76.33 370.81 -0.64 -76.97 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.66 Total: 30.47 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.45 Total: -23.73 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -1.43 Total: -86.76 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -4.68 Total: -91.80 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.34 Total: 53.37 kcal Total: -76.33 -0.64 -76.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.440 kcal (2) G-P(sol) polarization free energy of solvation -76.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds