Wall clock time and date at job start Tue Mar 31 2020 21:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00415 * 2 1 4 4 N 1.46497 * 109.47067 * 124.99554 * 3 2 1 5 5 C 1.46495 * 120.00472 * 278.10572 * 4 3 2 6 6 C 1.50707 * 109.47126 * 270.00193 * 5 4 3 7 7 H 1.07995 * 119.99943 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99986 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99851 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99798 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47287 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47055 * 120.00032 * 10 8 6 13 13 H 1.48496 * 109.46892 * 239.99511 * 10 8 6 14 14 C 1.34782 * 119.99626 * 98.11095 * 4 3 2 15 15 O 1.21557 * 119.99961 * 186.12467 * 14 4 3 16 16 C 1.47847 * 120.00229 * 6.11791 * 14 4 3 17 17 C 1.39577 * 120.14186 * 150.43493 * 16 14 4 18 18 C 1.37961 * 119.84625 * 180.27635 * 17 16 14 19 19 C 1.38359 * 120.14809 * 359.49810 * 18 17 16 20 20 C 1.50701 * 119.85393 * 180.25476 * 19 18 17 21 21 S 1.81404 * 109.46671 * 270.25288 * 20 19 18 22 22 N 1.65606 * 104.44602 * 180.02562 * 21 20 19 23 23 O 1.42097 * 110.54329 * 291.62122 * 21 20 19 24 24 O 1.42091 * 110.54528 * 68.37951 * 21 20 19 25 25 C 1.38357 * 120.28898 * 0.50924 * 19 18 17 26 26 C 1.37958 * 120.14980 * 359.74272 * 25 19 18 27 27 H 1.08002 * 120.00017 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99935 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47035 * 5.00274 * 3 2 1 31 31 H 1.08994 * 109.47457 * 245.00369 * 3 2 1 32 32 H 1.09000 * 109.47311 * 29.99934 * 5 4 3 33 33 H 1.08999 * 109.47452 * 150.00079 * 5 4 3 34 34 H 0.96994 * 119.99836 * 180.02562 * 9 8 6 35 35 H 1.07996 * 120.07441 * 0.02562 * 17 16 14 36 36 H 1.08006 * 119.92392 * 179.72609 * 18 17 16 37 37 H 1.08998 * 109.46757 * 30.25084 * 20 19 18 38 38 H 1.08998 * 109.46804 * 150.25476 * 20 19 18 39 39 H 0.97009 * 119.99890 * 359.97438 * 22 21 20 40 40 H 0.96999 * 120.00031 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.92586 * 179.76923 * 25 19 18 42 42 H 1.08001 * 120.07787 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5131 1.6965 2.4664 6 6 2.6365 3.1867 2.6550 7 1 3.0328 3.8006 1.8598 8 6 2.2434 3.7662 3.8427 9 7 1.7603 3.0186 4.8109 10 14 2.3957 5.6132 4.0761 11 1 2.9622 6.2225 2.8462 12 1 1.0536 6.1909 4.3411 13 1 3.2915 5.8945 5.2265 14 6 4.2918 1.0209 0.9442 15 8 5.0398 0.9343 1.8984 16 6 4.8058 0.7851 -0.4219 17 6 6.1376 1.0691 -0.7283 18 6 6.6094 0.8522 -2.0064 19 6 5.7684 0.3445 -2.9807 20 6 6.2922 0.1047 -4.3733 21 16 6.0616 1.6014 -5.3720 22 7 6.6717 1.2036 -6.8593 23 8 4.6802 1.8332 -5.6112 24 8 6.9105 2.6437 -4.9118 25 6 4.4472 0.0610 -2.6835 26 6 3.9613 0.2782 -1.4107 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4686 1.4026 2.5695 33 1 3.1108 1.1842 3.2203 34 1 1.4834 3.4263 5.6463 35 1 6.7961 1.4616 0.0324 36 1 7.6385 1.0757 -2.2460 37 1 7.3533 -0.1401 -4.3251 38 1 5.7486 -0.7232 -4.8283 39 1 7.0408 0.3195 -7.0115 40 1 6.6600 1.8547 -7.5783 41 1 3.7948 -0.3316 -3.4495 42 1 2.9296 0.0569 -1.1801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359435923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:53 Heat of formation + Delta-G solvation = -29.154120 kcal Electronic energy + Delta-G solvation = -26843.675298 eV Core-core repulsion = 22917.846983 eV Total energy + Delta-G solvation = -3925.828316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30947 -38.27739 -37.27813 -36.18284 -36.01582 -33.61845 -33.54953 -33.00902 -32.08620 -31.13238 -28.61747 -27.13244 -25.76094 -23.49901 -22.73560 -21.78497 -20.18615 -19.80457 -18.98318 -18.07319 -17.79133 -16.93365 -16.59728 -16.42529 -16.13589 -15.73617 -15.54547 -15.03350 -14.80290 -14.54138 -14.21061 -13.90267 -13.52402 -13.14328 -13.02349 -12.97560 -12.70245 -12.43599 -12.34759 -12.21712 -12.16590 -11.94742 -11.55550 -11.31618 -11.29174 -11.11471 -10.92613 -10.84772 -10.70300 -10.59250 -10.19393 -9.67163 -9.33838 -9.13756 -8.97227 -8.71582 -8.43935 -7.74312 -6.05108 -4.10067 -0.25381 0.92685 1.26430 2.36845 2.50932 3.14278 3.30648 3.32192 3.38343 3.43132 3.75866 3.84274 3.95617 4.06636 4.44739 4.54922 4.79285 4.85537 4.92690 4.95536 5.17824 5.28378 5.29435 5.34786 5.42150 5.54240 5.56873 5.71164 5.89753 5.99329 6.13579 6.19856 6.22779 6.37658 6.59104 6.73218 6.74341 6.87024 7.06673 7.42098 7.49904 7.91351 8.21382 8.31539 8.84512 9.00404 9.55155 11.03054 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.002954 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.569677 B = 9476.425737 C =10023.185670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.103 3.897 4 N -0.581 5.581 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.544 3.456 15 O -0.533 6.533 16 C -0.102 4.102 17 C -0.064 4.064 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.571 4.571 21 S 2.608 3.392 22 N -1.255 6.255 23 O -0.954 6.954 24 O -0.954 6.954 25 C -0.111 4.111 26 C -0.120 4.120 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.411 0.589 40 H 0.419 0.581 41 H 0.134 0.866 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.691 -10.036 -24.213 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C -0.020 4.020 4 N -0.311 5.311 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.331 3.669 15 O -0.411 6.411 16 C -0.106 4.106 17 C -0.083 4.083 18 C -0.129 4.129 19 C -0.094 4.094 20 C -0.699 4.699 21 S 2.700 3.300 22 N -0.928 5.928 23 O -0.943 6.943 24 O -0.943 6.943 25 C -0.130 4.130 26 C -0.137 4.137 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.237 0.763 40 H 0.249 0.751 41 H 0.152 0.848 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.537 -9.129 -23.076 25.663 hybrid contribution 0.401 0.144 -0.132 0.446 sum 6.939 -8.986 -23.208 25.836 Atomic orbital electron populations 1.23870 0.95725 1.02013 0.98963 1.23323 0.96497 0.98864 1.01266 1.21434 0.93721 0.95545 0.91312 1.48121 1.06611 1.64956 1.11386 1.19344 0.95240 0.95764 0.76930 1.21480 1.42531 0.92337 1.00422 0.92274 1.24930 0.95013 0.98508 0.95577 1.69945 1.42699 1.35347 1.05246 0.86436 0.77670 0.85028 0.78287 1.19706 1.20940 1.20845 1.18163 0.82806 0.78314 0.87624 1.90757 1.56414 1.51839 1.42124 1.20469 0.94766 1.00403 0.94948 1.21297 0.94413 0.96294 0.96303 1.21077 0.99974 0.99230 0.92654 1.18928 0.94859 1.03394 0.92232 1.29357 1.11438 1.21733 1.07337 1.05116 0.74811 0.76071 0.73998 1.53237 1.82118 1.25587 1.31829 1.93622 1.33818 1.83513 1.83374 1.93626 1.68008 1.51999 1.80706 1.21092 0.94357 1.00184 0.97415 1.22503 1.01472 0.97370 0.92372 0.88507 0.88051 0.87299 0.89517 0.87993 0.94647 0.93559 0.92742 0.84155 0.84756 0.83744 0.83728 0.76347 0.75076 0.84777 0.81653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 14.32 29.02 0.42 -1.72 16 2 C -0.18 -2.55 8.22 -36.02 -0.30 -2.85 16 3 C 0.10 1.72 5.33 -5.20 -0.03 1.69 16 4 N -0.58 -12.55 2.45 -177.55 -0.43 -12.98 16 5 C 0.25 6.48 5.21 -5.19 -0.03 6.45 16 6 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 10 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.54 11.78 7.46 -12.33 -0.09 11.69 16 15 O -0.53 -13.65 16.26 5.32 0.09 -13.56 16 16 C -0.10 -1.72 5.59 -104.97 -0.59 -2.31 16 17 C -0.06 -0.97 9.60 -39.18 -0.38 -1.35 16 18 C -0.11 -1.31 9.68 -39.64 -0.38 -1.70 16 19 C -0.09 -0.96 5.15 -104.53 -0.54 -1.50 16 20 C -0.57 -3.30 6.21 36.01 0.22 -3.08 16 21 S 2.61 21.44 5.95 -107.50 -0.64 20.80 16 22 N -1.25 -4.99 9.43 60.35 0.57 -4.42 16 23 O -0.95 -11.56 18.10 -57.54 -1.04 -12.60 16 24 O -0.95 -11.87 18.10 -57.54 -1.04 -12.91 16 25 C -0.11 -1.24 9.68 -39.64 -0.38 -1.63 16 26 C -0.12 -1.63 7.49 -39.19 -0.29 -1.92 16 27 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 29 H 0.11 1.43 7.58 -52.49 -0.40 1.03 16 30 H 0.09 1.50 7.78 -51.93 -0.40 1.09 16 31 H 0.10 1.50 4.07 -51.97 -0.21 1.29 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.14 2.15 7.92 -52.49 -0.42 1.73 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.14 0.42 8.08 -51.92 -0.42 0.00 16 38 H 0.14 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.41 0.23 8.83 -34.48 -0.30 -0.07 16 40 H 0.42 1.44 8.96 -34.48 -0.31 1.13 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.17 2.08 2.82 -52.49 -0.15 1.93 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -40.05 370.90 -9.04 -49.08 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.06 Total: 1.81 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -2.79 Total: -11.95 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.87 Total: -43.30 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.00 Total: -39.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 21.44 SS G_CDS: -0.64 Total: 20.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.05 -9.04 -49.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.929 kcal (2) G-P(sol) polarization free energy of solvation -40.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds