Wall clock time and date at job start Tue Mar 31 2020 21:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00415 * 2 1 4 4 N 1.46497 * 109.47067 * 124.99554 * 3 2 1 5 5 C 1.46495 * 120.00472 * 278.10572 * 4 3 2 6 6 C 1.50707 * 109.47126 * 270.00193 * 5 4 3 7 7 H 1.07995 * 119.99943 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99986 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99851 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99798 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47287 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47055 * 120.00032 * 10 8 6 13 13 H 1.48496 * 109.46892 * 239.99511 * 10 8 6 14 14 C 1.34782 * 119.99626 * 98.11095 * 4 3 2 15 15 O 1.21557 * 119.99961 * 186.12467 * 14 4 3 16 16 C 1.47847 * 120.00229 * 6.11791 * 14 4 3 17 17 C 1.39577 * 120.14186 * 150.43493 * 16 14 4 18 18 C 1.37961 * 119.84625 * 180.27635 * 17 16 14 19 19 C 1.38359 * 120.14809 * 359.49810 * 18 17 16 20 20 C 1.50701 * 119.85393 * 180.25476 * 19 18 17 21 21 S 1.81404 * 109.46671 * 270.25288 * 20 19 18 22 22 N 1.65606 * 104.44602 * 180.02562 * 21 20 19 23 23 O 1.42097 * 110.54329 * 291.62122 * 21 20 19 24 24 O 1.42091 * 110.54528 * 68.37951 * 21 20 19 25 25 C 1.38357 * 120.28898 * 0.50924 * 19 18 17 26 26 C 1.37958 * 120.14980 * 359.74272 * 25 19 18 27 27 H 1.08002 * 120.00017 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99935 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47035 * 5.00274 * 3 2 1 31 31 H 1.08994 * 109.47457 * 245.00369 * 3 2 1 32 32 H 1.09000 * 109.47311 * 29.99934 * 5 4 3 33 33 H 1.08999 * 109.47452 * 150.00079 * 5 4 3 34 34 H 0.96994 * 119.99836 * 180.02562 * 9 8 6 35 35 H 1.07996 * 120.07441 * 0.02562 * 17 16 14 36 36 H 1.08006 * 119.92392 * 179.72609 * 18 17 16 37 37 H 1.08998 * 109.46757 * 30.25084 * 20 19 18 38 38 H 1.08998 * 109.46804 * 150.25476 * 20 19 18 39 39 H 0.97009 * 119.99890 * 359.97438 * 22 21 20 40 40 H 0.96999 * 120.00031 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.92586 * 179.76923 * 25 19 18 42 42 H 1.08001 * 120.07787 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5131 1.6965 2.4664 6 6 2.6365 3.1867 2.6550 7 1 3.0328 3.8006 1.8598 8 6 2.2434 3.7662 3.8427 9 7 1.7603 3.0186 4.8109 10 14 2.3957 5.6132 4.0761 11 1 2.9622 6.2225 2.8462 12 1 1.0536 6.1909 4.3411 13 1 3.2915 5.8945 5.2265 14 6 4.2918 1.0209 0.9442 15 8 5.0398 0.9343 1.8984 16 6 4.8058 0.7851 -0.4219 17 6 6.1376 1.0691 -0.7283 18 6 6.6094 0.8522 -2.0064 19 6 5.7684 0.3445 -2.9807 20 6 6.2922 0.1047 -4.3733 21 16 6.0616 1.6014 -5.3720 22 7 6.6717 1.2036 -6.8593 23 8 4.6802 1.8332 -5.6112 24 8 6.9105 2.6437 -4.9118 25 6 4.4472 0.0610 -2.6835 26 6 3.9613 0.2782 -1.4107 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4686 1.4026 2.5695 33 1 3.1108 1.1842 3.2203 34 1 1.4834 3.4263 5.6463 35 1 6.7961 1.4616 0.0324 36 1 7.6385 1.0757 -2.2460 37 1 7.3533 -0.1401 -4.3251 38 1 5.7486 -0.7232 -4.8283 39 1 7.0408 0.3195 -7.0115 40 1 6.6600 1.8547 -7.5783 41 1 3.7948 -0.3316 -3.4495 42 1 2.9296 0.0569 -1.1801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359435923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:52 Heat of formation + Delta-G solvation = -61.288565 kcal Electronic energy + Delta-G solvation = -26845.068752 eV Core-core repulsion = 22917.846983 eV Total energy + Delta-G solvation = -3927.221770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63903 -39.59406 -38.02886 -37.57948 -36.92885 -35.32627 -34.15899 -33.96945 -33.76291 -32.18062 -30.07985 -28.53081 -27.22009 -25.27542 -23.79651 -23.09538 -21.46384 -20.40540 -20.35442 -18.68493 -18.61709 -18.39243 -18.32240 -17.71070 -16.95616 -16.84721 -16.46770 -16.29818 -16.16021 -15.91991 -15.71584 -15.08726 -14.68731 -14.45086 -14.42265 -14.06512 -13.79883 -13.63178 -13.34680 -13.14125 -13.11396 -13.09176 -12.99842 -12.97361 -12.68934 -12.57183 -12.33627 -12.25893 -12.08281 -11.84617 -11.66871 -11.22065 -10.81145 -10.68343 -10.47170 -10.00499 -9.81652 -9.53698 -8.26618 -6.41693 -0.93181 -0.09128 0.26151 1.24489 1.34146 1.36211 1.48602 1.76974 2.00147 2.24731 2.39528 2.67066 2.77481 3.03055 3.28337 3.39304 3.56347 3.77306 3.90370 3.99613 4.12964 4.17958 4.25986 4.34448 4.45736 4.47917 4.73338 4.81107 4.93045 4.96028 5.02017 5.13140 5.19900 5.25435 5.33448 5.33766 5.44859 5.65152 5.70242 5.77411 5.88959 6.00873 6.43581 6.59153 6.67849 7.18197 7.33662 8.81096 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.002954 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.569677 B = 9476.425737 C =10023.185670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.198 4.198 3 C 0.100 3.900 4 N -0.587 5.587 5 C 0.264 3.736 6 C -0.548 4.548 7 H 0.051 0.949 8 C 0.011 3.989 9 N -0.925 5.925 10 Si 0.968 3.032 11 H -0.270 1.270 12 H -0.266 1.266 13 H -0.279 1.279 14 C 0.536 3.464 15 O -0.592 6.592 16 C -0.133 4.133 17 C -0.084 4.084 18 C -0.110 4.110 19 C -0.083 4.083 20 C -0.555 4.555 21 S 2.615 3.385 22 N -1.236 6.236 23 O -0.999 6.999 24 O -1.005 7.005 25 C -0.107 4.107 26 C -0.120 4.120 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.027 0.973 33 H 0.000 1.000 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.190 0.810 39 H 0.429 0.571 40 H 0.424 0.576 41 H 0.174 0.826 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 -11.099 -27.982 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.217 4.217 3 C -0.022 4.022 4 N -0.315 5.315 5 C 0.143 3.857 6 C -0.586 4.586 7 H 0.069 0.931 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.194 1.194 12 H -0.191 1.191 13 H -0.205 1.205 14 C 0.326 3.674 15 O -0.474 6.474 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.685 4.685 21 S 2.710 3.290 22 N -0.915 5.915 23 O -0.988 6.988 24 O -0.994 6.994 25 C -0.126 4.126 26 C -0.138 4.138 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.045 0.955 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.181 0.819 37 H 0.202 0.798 38 H 0.208 0.792 39 H 0.259 0.741 40 H 0.255 0.745 41 H 0.192 0.808 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.607 -10.191 -26.918 29.531 hybrid contribution 0.397 0.366 0.933 1.078 sum 7.004 -9.825 -25.985 28.649 Atomic orbital electron populations 1.24128 0.95223 1.03303 0.96117 1.23185 0.96960 0.97792 1.03762 1.21719 0.93123 0.96954 0.90370 1.48091 1.07790 1.64703 1.10957 1.18760 0.93716 0.94402 0.78815 1.21716 1.42877 0.93342 1.00702 0.93082 1.25839 0.94345 1.03582 0.95084 1.70053 1.43154 1.37491 1.05766 0.85360 0.78358 0.78928 0.78136 1.19400 1.19120 1.20481 1.19003 0.82174 0.76901 0.89369 1.90695 1.57707 1.54524 1.44518 1.20113 0.96200 1.04466 0.92874 1.21315 0.93689 0.97460 0.97810 1.21407 1.01681 0.98381 0.91384 1.19392 0.94404 1.00631 0.94112 1.29314 1.14723 1.21012 1.03448 1.04477 0.73544 0.76309 0.74683 1.52755 1.81631 1.26826 1.30284 1.93579 1.36165 1.84762 1.84274 1.93581 1.68715 1.55212 1.81884 1.21576 0.95268 0.98872 0.96862 1.22568 1.01433 0.96986 0.92769 0.85757 0.88163 0.86167 0.90618 0.85787 0.95481 0.98177 0.92251 0.85959 0.81944 0.79791 0.79222 0.74059 0.74477 0.80841 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 14.32 67.78 0.97 -2.62 16 2 C -0.20 -5.49 8.22 25.65 0.21 -5.28 16 3 C 0.10 3.41 5.33 85.63 0.46 3.87 16 4 N -0.59 -26.97 2.45 -833.92 -2.04 -29.01 16 5 C 0.26 14.89 5.21 85.64 0.45 15.34 16 6 C -0.55 -32.84 9.39 25.60 0.24 -32.60 16 7 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 8 C 0.01 0.64 5.46 84.66 0.46 1.10 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 10 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 C 0.54 24.93 7.46 86.79 0.65 25.57 16 15 O -0.59 -33.13 16.26 -3.89 -0.06 -33.19 16 16 C -0.13 -4.64 5.59 -20.09 -0.11 -4.75 16 17 C -0.08 -2.61 9.60 22.53 0.22 -2.39 16 18 C -0.11 -2.40 9.68 22.23 0.22 -2.18 16 19 C -0.08 -1.42 5.15 -19.81 -0.10 -1.52 16 20 C -0.56 -3.28 6.21 71.24 0.44 -2.84 16 21 S 2.61 34.64 5.95 -56.49 -0.34 34.31 16 22 N -1.24 -5.20 9.43 37.02 0.35 -4.85 16 23 O -1.00 -21.77 18.10 -127.65 -2.31 -24.08 16 24 O -1.00 -23.24 18.10 -127.65 -2.31 -25.55 16 25 C -0.11 -2.00 9.68 22.23 0.22 -1.79 16 26 C -0.12 -3.13 7.49 22.53 0.17 -2.96 16 27 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.10 2.42 7.84 -2.91 -0.02 2.40 16 29 H 0.12 3.06 7.58 -2.91 -0.02 3.04 16 30 H 0.08 2.71 7.78 -2.39 -0.02 2.69 16 31 H 0.13 3.66 4.07 -2.43 -0.01 3.65 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.00 0.01 7.35 -2.39 -0.02 -0.01 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.12 4.10 7.92 -2.91 -0.02 4.08 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.18 -0.19 8.08 -2.39 -0.02 -0.21 16 38 H 0.19 -0.42 8.08 -2.39 -0.02 -0.44 16 39 H 0.43 -1.59 8.83 -96.73 -0.85 -2.45 16 40 H 0.42 1.66 8.96 -96.74 -0.87 0.79 16 41 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.17 4.15 2.82 -2.91 -0.01 4.14 16 Total: -1.00 -95.32 370.90 -0.57 -95.89 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -0.64 Total: 7.97 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.48 Total: -13.04 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.41 Total: -90.53 kcal Atomic # 8 Polarization: -78.14 SS G_CDS: -4.69 Total: -82.82 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 34.64 SS G_CDS: -0.34 Total: 34.31 kcal Total: -95.32 -0.57 -95.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.597 kcal (2) G-P(sol) polarization free energy of solvation -95.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds