Wall clock time and date at job start Tue Mar 31 2020 21:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00231 * 2 1 4 4 O 1.20831 * 119.99873 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00305 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47146 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47172 * 60.00253 * 6 5 3 8 8 N 1.46499 * 109.47340 * 180.02562 * 6 5 3 9 9 C 1.34784 * 119.99646 * 65.32652 * 8 6 5 10 10 O 1.21277 * 119.99718 * 354.78746 * 9 8 6 11 11 C 1.50696 * 119.99657 * 174.78085 * 9 8 6 12 12 S 1.81005 * 109.46772 * 180.02562 * 11 9 8 13 13 C 1.76201 * 99.99983 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99654 * 0.02562 * 13 12 11 15 15 C 1.38800 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31632 * 119.99852 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47039 * 60.00177 * 17 15 13 19 19 H 1.48494 * 109.46975 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47166 * 300.00185 * 17 15 13 21 21 C 1.50702 * 109.47425 * 300.00472 * 6 5 3 22 22 C 1.38224 * 119.61922 * 178.71870 * 21 6 5 23 23 C 1.38634 * 119.16250 * 179.97438 * 22 21 6 24 24 C 1.38673 * 118.41750 * 359.97438 * 23 22 21 25 25 C 1.38183 * 119.16427 * 0.02562 * 24 23 22 26 26 N 1.31857 * 119.61764 * 358.44355 * 21 6 5 27 27 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46672 * 299.99605 * 1 2 3 29 29 H 1.09000 * 109.46655 * 59.99654 * 1 2 3 30 30 H 1.09005 * 109.46556 * 60.00634 * 5 3 2 31 31 H 1.08995 * 109.47111 * 300.00898 * 5 3 2 32 32 H 1.09000 * 109.46886 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47051 * 300.00044 * 7 6 5 34 34 H 1.09001 * 109.46422 * 59.99824 * 7 6 5 35 35 H 0.96997 * 120.00284 * 245.05406 * 8 6 5 36 36 H 1.08998 * 109.47448 * 300.00007 * 11 9 8 37 37 H 1.08998 * 109.47387 * 60.00728 * 11 9 8 38 38 H 0.96999 * 119.99801 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.41940 * 359.97438 * 22 21 6 40 40 H 1.07992 * 120.79200 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.41840 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.61636 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 3.4527 3.4353 1.2504 8 7 5.4632 2.8188 0.0011 9 6 6.1616 2.3678 -1.0599 10 8 5.5871 1.8131 -1.9726 11 6 7.6562 2.5531 -1.1119 12 16 8.2983 1.8476 -2.6501 13 6 10.0148 2.1931 -2.4521 14 1 10.3645 2.7011 -1.5655 15 6 10.9173 1.8123 -3.4354 16 7 10.4909 1.1935 -4.5162 17 14 12.7369 2.1792 -3.2258 18 1 13.2388 1.5092 -1.9993 19 1 13.4829 1.6736 -4.4060 20 1 12.9354 3.6459 -3.1051 21 6 3.4617 3.4256 -1.2293 22 6 3.7084 4.7713 -1.4264 23 6 3.2090 5.3904 -2.5618 24 6 2.4774 4.6292 -3.4609 25 6 2.2714 3.2886 -3.1968 26 7 2.7654 2.7317 -2.1082 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 3.9564 0.7806 -0.8893 31 1 3.9558 0.7808 0.8907 32 1 3.7621 4.4805 1.2510 33 1 2.3643 3.3782 1.2500 34 1 3.8422 2.9409 2.1403 35 1 5.9290 3.1977 0.7628 36 1 7.8920 3.6166 -1.0742 37 1 8.1147 2.0488 -0.2613 38 1 11.1216 0.9278 -5.2035 39 1 4.2829 5.3333 -0.7049 40 1 3.3863 6.4403 -2.7423 41 1 2.0737 5.0785 -4.3562 42 1 1.7023 2.6890 -3.8918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362873133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:34 Heat of formation + Delta-G solvation = -71.139236 kcal Electronic energy + Delta-G solvation = -27505.215395 eV Core-core repulsion = 23577.566468 eV Total energy + Delta-G solvation = -3927.648927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19518 -39.87593 -38.95944 -36.80618 -35.60260 -32.53673 -32.43280 -31.96696 -30.48666 -29.16961 -28.49033 -27.11654 -25.49170 -24.02609 -23.23803 -21.79409 -20.86347 -19.70613 -17.95689 -17.74735 -17.16715 -16.59942 -16.29855 -16.15270 -16.00843 -15.65708 -15.03633 -14.81048 -14.69892 -14.19730 -14.10073 -13.62686 -13.54269 -13.36017 -13.09034 -12.90982 -12.79455 -12.47940 -12.27171 -12.17072 -11.99186 -11.83681 -11.57424 -11.18370 -11.04707 -11.04122 -10.78103 -10.74321 -10.28040 -9.83172 -9.68604 -9.44046 -9.35194 -9.06896 -8.99443 -8.74654 -8.24130 -6.50150 -6.21994 -3.92524 1.25044 1.47687 2.38664 2.65154 2.98933 3.11976 3.22859 3.27318 3.31150 3.66515 4.04477 4.19831 4.22254 4.50874 4.68069 4.92032 4.96577 5.01535 5.04155 5.09525 5.13086 5.15489 5.22284 5.25778 5.38501 5.43013 5.44110 5.54424 5.66992 5.74978 5.84660 5.87453 5.89964 6.03614 6.12761 6.22951 6.29133 6.47076 6.57529 6.83498 7.58554 7.64771 7.88640 8.20558 8.34363 8.57656 9.23188 10.85293 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.003073 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.916433 B = 9110.029131 C = 9620.385982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.361 6.361 3 C 0.487 3.513 4 O -0.505 6.505 5 C -0.116 4.116 6 C 0.242 3.758 7 C -0.166 4.166 8 N -0.731 5.731 9 C 0.529 3.471 10 O -0.496 6.496 11 C -0.153 4.153 12 S -0.057 6.057 13 C -0.537 4.537 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.153 3.847 22 C -0.162 4.162 23 C -0.076 4.076 24 C -0.177 4.177 25 C 0.106 3.894 26 N -0.455 5.455 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.682 4.953 11.750 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.278 6.278 3 C 0.330 3.670 4 O -0.393 6.393 5 C -0.155 4.155 6 C 0.155 3.845 7 C -0.224 4.224 8 N -0.387 5.387 9 C 0.315 3.685 10 O -0.368 6.368 11 C -0.304 4.304 12 S 0.170 5.830 13 C -0.685 4.685 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.200 1.200 21 C 0.014 3.986 22 C -0.182 4.182 23 C -0.102 4.102 24 C -0.197 4.197 25 C -0.051 4.051 26 N -0.164 5.164 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.239 0.761 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.955 3.347 10.174 22.648 hybrid contribution 2.124 2.077 1.180 3.196 sum -17.831 5.424 11.354 21.824 Atomic orbital electron populations 1.23166 0.76888 1.03226 1.02204 1.86511 1.22974 1.33837 1.84455 1.23219 0.91560 0.81046 0.71153 1.90544 1.67188 1.35961 1.45601 1.21648 0.88327 0.98378 1.07146 1.18596 0.80469 0.92698 0.92787 1.22386 1.04644 1.00644 0.94703 1.46212 1.04730 1.66252 1.21492 1.20415 0.89240 0.77421 0.81382 1.90735 1.70645 1.39285 1.36147 1.23539 0.93502 1.05460 1.07870 1.85421 1.04783 1.75636 1.17195 1.22829 0.92208 1.44799 1.08662 0.91008 1.24985 0.99508 0.94582 0.94460 1.70008 1.35346 1.37026 1.07891 0.86235 0.82722 0.78769 0.77844 1.19919 1.20817 1.19964 1.20782 0.93380 0.90429 0.94032 1.21711 1.01668 0.95729 0.99055 1.21452 0.95235 1.00098 0.93421 1.22043 1.01135 0.95908 1.00593 1.22567 0.96169 0.92558 0.93811 1.67229 1.07979 1.39005 1.02171 0.88512 0.92331 0.92038 0.84941 0.88012 0.91428 0.88298 0.91396 0.76149 0.89301 0.89178 0.92131 0.85469 0.85203 0.85216 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.57 10.57 -39.25 -0.41 -4.99 16 3 C 0.49 6.63 6.53 36.01 0.24 6.86 16 4 O -0.51 -7.38 11.56 -18.75 -0.22 -7.60 16 5 C -0.12 -1.56 4.49 -27.88 -0.13 -1.69 16 6 C 0.24 3.10 0.61 -132.97 -0.08 3.02 16 7 C -0.17 -1.61 8.09 37.16 0.30 -1.31 16 8 N -0.73 -9.37 4.96 -48.68 -0.24 -9.61 16 9 C 0.53 9.45 7.25 -10.98 -0.08 9.37 16 10 O -0.50 -10.74 13.02 5.56 0.07 -10.67 16 11 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 12 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 13 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 14 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 17 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.15 2.30 3.19 -82.59 -0.26 2.04 16 22 C -0.16 -2.20 9.10 -39.44 -0.36 -2.56 16 23 C -0.08 -0.96 10.18 -39.27 -0.40 -1.36 16 24 C -0.18 -2.25 10.11 -39.44 -0.40 -2.64 16 25 C 0.11 1.54 11.18 -17.55 -0.20 1.35 16 26 N -0.46 -7.46 6.94 -9.47 -0.07 -7.52 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.13 2.21 6.28 -51.93 -0.33 1.88 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.57 7.30 -51.93 -0.38 0.19 16 33 H 0.10 1.12 5.52 -51.93 -0.29 0.83 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.40 3.78 8.48 -40.82 -0.35 3.44 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.13 1.44 7.50 -52.49 -0.39 1.05 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -36.49 366.51 -7.23 -43.72 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.50 Total: 5.08 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 0.12 Total: -1.11 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.43 Total: -42.50 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.56 Total: -23.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.49 -7.23 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362873133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.421 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds